Rh4AG031900
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
6893505 .. 6899032
5528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG031900.1

Sequence Viewer

Length: 654 bp
ATGATTTGCTATCACTTTTCAGTATTTCTCCTGGAGCTATATGGTGGCAGGGCTCTGAATTCAAATAACTTATCTGGAACAATACCTTCTGCTTTGGGTCAACTCTCCAACCTCTACTTGCTTGATCTATCAGACAATCAGCTGACTGGACCTCTCCCAATCTCAACCTCTACTTCTCCAGGAGGATTAGACCTCTTGTTAAAGGCTGAACACTTCCATTTGAGCAACAACCAGCTTTCAGGTTCCATTCCACCCGAGCTTTTCAGTTCTGAAATGAGACTGATTCATCTGTTCCTTGATGGAAATAAACTTACCGGGGTTATTCCAATGACTTTAGGACTTGTTCAGACTTTTGAGATGGTTCGGCTTAATAGAAATACTCTGACCGGAAGTGTCCCCTCAAACCTAAACAACCTTACAAATGTCAATGAACTGAATTTGGCCAACAACAACTTGACAGGCCTTTTGCCAGACTTGACTGGAATGAATTCCCTCAATTATGTAGACCTTAGTAACAACTCATTTGACCCATCAGTAGCTCCACTTTGGTTCTCAACCTTACCCACACTTACTACTCTGGTTATGGAATTCGGATCACTTCAAGGGCCTGTGCCAGAGAATCTTTTCAGCCTTCCAGAATTACAGGAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

217

Amino Acids

23.57

Weight (kDa)

4.45

Isoelectric Point (pI)

27.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 504
AclWI GGATC 1 cut(s) 601
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 4 cut(s) 58, 436, 487, 587
AgsI TTSAA 2 cut(s) 63, 602
AjnI CCWGG 2 cut(s) 30, 178
AluBI AGCT 5 cut(s) 37, 142, 235, 259, 539
AluI AGCT 5 cut(s) 37, 142, 235, 259, 539
Alw26I GTCTC 1 cut(s) 271
AlwI GGATC 1 cut(s) 601
Ama87I CYCGRG 1 cut(s) 254
AoxI GGCC 3 cut(s) 441, 460, 605
ApoI RAATTY 4 cut(s) 58, 436, 487, 587
ArsI GACNNNNNNTTYG 2 cut(s) 448, 480
Asp700I GAANNNNTTC 2 cut(s) 487, 623
AspS9I GGNCC 2 cut(s) 149, 605
AsuC2I CCSGG 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 254
AvaII GGWCC 1 cut(s) 149
BalI TGGCCA 1 cut(s) 443
BanII GRGCYC 1 cut(s) 55
BccI CCATC 3 cut(s) 293, 352, 538
BciT130I CCWGG 2 cut(s) 32, 180
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 271
Bme1390I CCNGG 3 cut(s) 32, 180, 316
Bme18I GGWCC 1 cut(s) 149
BmeT110I CYCGRG 1 cut(s) 254
BmgT120I GGNCC 2 cut(s) 149, 605
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 3 cut(s) 32, 180, 316
BpmI CTGGAG 2 cut(s) 53, 162
BpuMI CCSGG 1 cut(s) 316
BsaJI CCNNGG 1 cut(s) 315
BsaWI WCCGGW 1 cut(s) 386
Bse1I ACTGG 2 cut(s) 151, 484
BseBI CCWGG 2 cut(s) 32, 180
BseDI CCNNGG 1 cut(s) 315
BseNI ACTGG 2 cut(s) 151, 484
BshFI GGCC 3 cut(s) 443, 462, 607
BsiHKCI CYCGRG 1 cut(s) 254
BsiSI CCGG 2 cut(s) 315, 387
BslFI GGGAC 1 cut(s) 380
BsmAI GTCTC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 3 cut(s) 443, 462, 607
BsoBI CYCGRG 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 2 cut(s) 124, 593
BspANI GGCC 3 cut(s) 443, 462, 607
BspLI GGNNCC 1 cut(s) 244
BspPI GGATC 1 cut(s) 601
BsrI ACTGG 2 cut(s) 151, 484
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 2 cut(s) 124, 593
Bst2UI CCWGG 2 cut(s) 32, 180
BstDEI CTNAG 1 cut(s) 509
BstKTI GATC 2 cut(s) 127, 596
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 2 cut(s) 124, 593
BstNI CCWGG 2 cut(s) 32, 180
BstSCI CCNGG 3 cut(s) 30, 178, 314
BsuRI GGCC 3 cut(s) 443, 462, 607
Cfr13I GGNCC 2 cut(s) 149, 605
DdeI CTNAG 1 cut(s) 509
DpnI GATC 2 cut(s) 126, 595
DpnII GATC 2 cut(s) 124, 593
EaeI YGGCCR 1 cut(s) 441
Eco147I AGGCCT 1 cut(s) 462
Eco24I GRGCYC 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 149
Eco88I CYCGRG 1 cut(s) 254
EcoO109I RGGNCCY 1 cut(s) 605
EcoRI GAATTC 3 cut(s) 58, 487, 587
EcoRII CCWGG 2 cut(s) 30, 178
EcoT38I GRGCYC 1 cut(s) 55
FaiI YATR 4 cut(s) 40, 42, 501, 584
FaqI GGGAC 1 cut(s) 380
FblI GTMKAC 1 cut(s) 504
FriOI GRGCYC 1 cut(s) 55
GsuI CTGGAG 2 cut(s) 53, 162
HaeIII GGCC 3 cut(s) 443, 462, 607
HapII CCGG 2 cut(s) 315, 387
HincII GTYRAC 1 cut(s) 101
HindII GTYRAC 1 cut(s) 101
HinfI GANTC 2 cut(s) 283, 619
HpaII CCGG 2 cut(s) 315, 387
Hpy166II GTNNAC 2 cut(s) 101, 505
Hpy188I TCNGA 6 cut(s) 57, 133, 271, 348, 384, 593
Hpy188III TCNNGA 2 cut(s) 75, 635
Hpy8I GTNNAC 2 cut(s) 101, 505
HpyAV CCTTC 2 cut(s) 96, 641
HpyF3I CTNAG 1 cut(s) 509
Kzo9I GATC 2 cut(s) 124, 593
LmnI GCTCC 2 cut(s) 34, 544
MaeIII GTNAC 1 cut(s) 512
MalI GATC 2 cut(s) 126, 595
MboI GATC 2 cut(s) 124, 593
MhlI GDGCHC 1 cut(s) 55
MlsI TGGCCA 1 cut(s) 443
MluCI AATT 6 cut(s) 58, 436, 487, 496, 587, 638
MluNI TGGCCA 1 cut(s) 443
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 7 cut(s) 122, 162, 176, 178, 203, 409, 503
Mox20I TGGCCA 1 cut(s) 443
MroXI GAANNNNTTC 2 cut(s) 487, 623
MscI TGGCCA 1 cut(s) 443
MseI TTAA 2 cut(s) 200, 369
Msp20I TGGCCA 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 2 cut(s) 315, 387
MspR9I CCNGG 3 cut(s) 32, 180, 316
MvaI CCWGG 2 cut(s) 32, 180
NciI CCSGG 1 cut(s) 316
NdeII GATC 2 cut(s) 124, 593
NlaIV GGNNCC 1 cut(s) 244
PceI AGGCCT 1 cut(s) 462
PdmI GAANNNNTTC 2 cut(s) 487, 623
PfeI GAWTC 2 cut(s) 283, 619
PfoI TCCNGGA 2 cut(s) 30, 178
Psp6I CCWGG 2 cut(s) 30, 178
PspGI CCWGG 2 cut(s) 30, 178
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 2 cut(s) 149, 605
PvuII CAGCTG 1 cut(s) 142
SaqAI TTAA 2 cut(s) 200, 369
Sau3AI GATC 2 cut(s) 124, 593
Sau96I GGNCC 2 cut(s) 149, 605
ScrFI CCNGG 3 cut(s) 32, 180, 316
SduI GDGCHC 1 cut(s) 55
SinI GGWCC 1 cut(s) 149
Sse9I AATT 6 cut(s) 58, 436, 487, 496, 587, 638
SseBI AGGCCT 1 cut(s) 462
StuI AGGCCT 1 cut(s) 462
StyD4I CCNGG 3 cut(s) 30, 178, 314
TasI AATT 6 cut(s) 58, 436, 487, 496, 587, 638
TfiI GAWTC 2 cut(s) 283, 619
Tru1I TTAA 2 cut(s) 200, 369
Tru9I TTAA 2 cut(s) 200, 369
TspDTI ATGAA 3 cut(s) 275, 444, 500
VpaK11BI GGWCC 1 cut(s) 149
XapI RAATTY 4 cut(s) 58, 436, 487, 587
XmiI GTMKAC 1 cut(s) 504
XmnI GAANNNNTTC 2 cut(s) 487, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.