Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004586

Physical Location & Seq

Genomic Coordinates Reverse (-)

43443939 .. 43447531

Gene Structure 3593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G021920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGGAGGGAATCTGGCTTTCAATGAGGACCTGAAGGGACAACTTCAAGCAACAATTGGAAACTTGACCAAACTAGAAACCTTGAATCTGGCTTTCAATGAGGACCTGAAGGGACAACTTCAAGCAACAATTGGAAACTTGACCAAACTAGAAACCTTAATCCTGGATGGTTGCAGATTCTCTGGTCCTATTCCAGCTACAATAGGATCTTTAAAGCAACTTTCTTATCTATCTTTGAAAAACAATAGATTTAGTGGTCCAATTCCACCTTCCATTGGCAATCTAGCCAGTCTTGTCTTTCTGGACCTATCGGACAACATGCTTGGGGATTCCATTCCACTCTCAAATGGGACTGCACCTGGTCTTGATATGTTAAATAAAACAAAGCACTTTCATTTTTCAAATAACCAGCTCTCGGGCAGCATTCCACCTCAACTGTTCAGCTCAAATATGTCTCTGATACATTTGATTTTTGACAGAAATAATTTTACTGGCAGCATCCCTTCCACACTTGGACTTGTGAAAACTCTGGCGGCAGTACGCCTTGATAGAAATTCATTAAGTGGGTCTGTACCTGAGAGCCTCAGAAATCTTACAAATGTGTCTGAACTGCACTTGTCCAACAATAAGCTGACTGGCCCAGTGCCCAACCTTACTCTCATGGATTCCCTCAACTATGTGGATATGAGCAATAATACTTTTGATGCGTCAGATATTCCTAATTGGTTTTCAACCTTGAAGTTCTTGACAACATTAATGATGGAAAGCACAGGACTTCAAGGAAAAGTCCCTCAAGCCCTTTTCAGCCTTCAAAATTTGGAGACAGTGATACTGAAGAACAACAGTCTCAATGGTACATTGGATATTGGAGCAAATTACGGCAACCAATTGAACCTAATTGATCTGCAGAAGAACAACATTGCTGAACTTGCACCAATTGATGAGGGATCCAACTACACATTGATTCTAGTTGACAATCCAATTTGTGAGGGGAGTCAGAATAACGTGGCAAAGAACTACTGCAGTGTTTCTCCTCCTAATCCCTCAATTTCAAATACACCAAGTAATTGTGCTGCCTGTAGTTCTGGCCAGTTTGCTTCCCCAAACTGTAAATGTGCATTTCCCTATACTTGGGTTGTGATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

382

Amino Acids

41.12

Weight (kDa)

5.13

Isoelectric Point (pI)

29.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	17 - 105	5.5e-09	Leucine-rich repeat region
LRR_8	PF13855	49 - 108	8.6e-07	Leucine rich repeat
LRR_14	PF23598	66 - 299	3.4e-11	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49750
fragaria_vesca	FvH4_6g08970 FvH4_6g09001
prunus_persica	Prupe.6G301700_v2.0.a1
rosa_laevigata	RLG00000025099
rosa_multiflora	Rmu_co8402051.1_g000001 Rmu_sc0002435.1_g000001 Rmu_sc0010702.1_g000004 Rmu_sc0022643.1_g000002 Rmu_sc0035588.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241190 Rroxscaffold_6G00420360 Rroxscaffold_6G00420370
rosa_rugosa	Rorug03G0034500 Rorug03G0034500 Rorug03G0034600 Rorug03G0034700 Rorug03G0034800
rosa_samantha	Rh2AG320500 Rh3AG092500 Rh3AG092600 Rh3BG095700 Rh3CG096500 Rh3CG096700 Rh3DG096200 Rh3DG096300 Rh4AG031900
rosa_wichuraiana	Rw3G007950 Rw3G007960 Rw6G021920 Rw7G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	533
AclWI	GGATC	3 cut(s)	214, 942, 955
AcoI	YGGCCR	1 cut(s)	1087
AcsI	RAATTY	2 cut(s)	553, 814
AcuI	CTGAAG	3 cut(s)	53, 128, 854
AfaI	GTAC	3 cut(s)	540, 573, 856
AfiI	CCNNNNNNNGG	3 cut(s)	275, 415, 1131
AjnI	CCWGG	2 cut(s)	162, 358
AjuI	GAANNNNNNNTTGG	2 cut(s)	253, 285
AluBI	AGCT	4 cut(s)	197, 412, 444, 631
AluI	AGCT	4 cut(s)	197, 412, 444, 631
Alw26I	GTCTC	3 cut(s)	459, 815, 851
AlwI	GGATC	3 cut(s)	214, 942, 955
Ama87I	CYCGRG	1 cut(s)	415
AoxI	GGCC	2 cut(s)	637, 1087
ApeKI	GCWGC	3 cut(s)	420, 495, 1073
ApoI	RAATTY	2 cut(s)	553, 814
AseI	ATTAAT	1 cut(s)	755
AspS9I	GGNCC	6 cut(s)	28, 103, 185, 257, 304, 638
AvaI	CYCGRG	1 cut(s)	415
AvaII	GGWCC	5 cut(s)	28, 103, 185, 257, 304
BaeGI	GKGCMC	1 cut(s)	648
BalI	TGGCCA	1 cut(s)	1089
BamHI	GGATCC	1 cut(s)	947
BbvI	GCAGC	3 cut(s)	432, 507, 1060
BccI	CCATC	2 cut(s)	161, 754
BceAI	ACGGC	1 cut(s)	895
BciT130I	CCWGG	2 cut(s)	164, 360
BcoDI	GTCTC	3 cut(s)	459, 815, 851
BfaI	CTAG	4 cut(s)	74, 149, 284, 968
BfmI	CTRYAG	3 cut(s)	905, 1021, 1078
BisI	GCNGC	4 cut(s)	421, 496, 534, 1074
BlsI	GCNGC	4 cut(s)	422, 497, 535, 1075
Bme1390I	CCNGG	2 cut(s)	164, 360
Bme18I	GGWCC	5 cut(s)	28, 103, 185, 257, 304
BmeT110I	CYCGRG	1 cut(s)	415
BmgT120I	GGNCC	6 cut(s)	28, 103, 185, 257, 304, 638
BmiI	GGNNCC	1 cut(s)	949
BmrFI	CCNGG	2 cut(s)	164, 360
BmrI	ACTGGG	1 cut(s)	635
BmsI	GCATC	2 cut(s)	507, 694
BmuI	ACTGGG	1 cut(s)	635
BpuEI	CTTGAG	1 cut(s)	777
Bsc4I	CCNNNNNNNGG	3 cut(s)	275, 415, 1131
Bse1I	ACTGG	5 cut(s)	288, 496, 640, 641, 1090
Bse3DI	GCAATG	1 cut(s)	918
BseBI	CCWGG	2 cut(s)	164, 360
BseGI	GGATG	2 cut(s)	172, 498
BseLI	CCNNNNNNNGG	3 cut(s)	275, 415, 1131
BseMI	GCAATG	1 cut(s)	918
BseMII	CTCAG	2 cut(s)	567, 598
BseNI	ACTGG	5 cut(s)	288, 496, 640, 641, 1090
BseRI	GAGGAG	1 cut(s)	1023
BseSI	GKGCMC	1 cut(s)	648
BseXI	GCAGC	3 cut(s)	432, 507, 1060
BsgI	GTGCAG	2 cut(s)	339, 596
BshFI	GGCC	2 cut(s)	639, 1089
BsiHKCI	CYCGRG	1 cut(s)	415
BslFI	GGGAC	4 cut(s)	51, 126, 364, 773
BslI	CCNNNNNNNGG	3 cut(s)	275, 415, 1131
BsmAI	GTCTC	3 cut(s)	459, 815, 851
BsmFI	GGGAC	4 cut(s)	51, 126, 364, 773
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	2 cut(s)	639, 1089
BsoBI	CYCGRG	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	648
Bsp143I	GATC	3 cut(s)	206, 901, 947
BspACI	CCGC	1 cut(s)	533
BspANI	GGCC	2 cut(s)	639, 1089
BspCNI	CTCAG	2 cut(s)	568, 597
BspLI	GGNNCC	1 cut(s)	949
BspMAI	CTGCAG	2 cut(s)	909, 1025
BspPI	GGATC	3 cut(s)	214, 942, 955
BsrDI	GCAATG	1 cut(s)	918
BsrI	ACTGG	5 cut(s)	288, 496, 640, 641, 1090
BssMI	GATC	3 cut(s)	206, 901, 947
Bst2UI	CCWGG	2 cut(s)	164, 360
Bst4CI	ACNGT	4 cut(s)	438, 826, 845, 1109
BstDEI	CTNAG	2 cut(s)	576, 584
BstF5I	GGATG	2 cut(s)	172, 498
BstKTI	GATC	3 cut(s)	209, 904, 950
BstMAI	GTCTC	3 cut(s)	459, 815, 851
BstMBI	GATC	3 cut(s)	206, 901, 947
BstMWI	GCNNNNNNNGC	1 cut(s)	929
BstNI	CCWGG	2 cut(s)	164, 360
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	2 cut(s)	162, 358
BstSFI	CTRYAG	3 cut(s)	905, 1021, 1078
BstSLI	GKGCMC	1 cut(s)	648
BstV1I	GCAGC	3 cut(s)	432, 507, 1060
BstX2I	RGATCY	2 cut(s)	206, 947
BstYI	RGATCY	2 cut(s)	206, 947
BsuRI	GGCC	2 cut(s)	639, 1089
BtsCI	GGATG	2 cut(s)	172, 498
BtsI	GCAGTG	1 cut(s)	1030
BtsIMutI	CAGTG	3 cut(s)	648, 831, 1030
Cfr13I	GGNCC	6 cut(s)	28, 103, 185, 257, 304, 638
CseI	GACGC	1 cut(s)	696
CsiI	ACCWGGT	1 cut(s)	358
Csp6I	GTAC	3 cut(s)	539, 572, 855
CviAII	CATG	2 cut(s)	319, 661
CviQI	GTAC	3 cut(s)	539, 572, 855
DdeI	CTNAG	2 cut(s)	576, 584
DpnI	GATC	3 cut(s)	208, 903, 949
DpnII	GATC	3 cut(s)	206, 901, 947
DraI	TTTAAA	1 cut(s)	213
EaeI	YGGCCR	1 cut(s)	1087
Eco47I	GGWCC	5 cut(s)	28, 103, 185, 257, 304
Eco57I	CTGAAG	3 cut(s)	53, 128, 854
Eco88I	CYCGRG	1 cut(s)	415
EcoO109I	RGGNCCY	2 cut(s)	28, 103
EcoRII	CCWGG	2 cut(s)	162, 358
FaeI	CATG	2 cut(s)	322, 664
FaiI	YATR	7 cut(s)	320, 371, 452, 662, 678, 686, 1128
FaqI	GGGAC	4 cut(s)	51, 126, 364, 773
FatI	CATG	2 cut(s)	318, 660
Fnu4HI	GCNGC	4 cut(s)	421, 496, 534, 1074
FokI	GGATG	2 cut(s)	179, 485
Fsp4HI	GCNGC	4 cut(s)	421, 496, 534, 1074
FspBI	CTAG	4 cut(s)	74, 149, 284, 968
GluI	GCNGC	4 cut(s)	421, 496, 534, 1074
HaeIII	GGCC	2 cut(s)	639, 1089
HgaI	GACGC	1 cut(s)	696
Hin1II	CATG	2 cut(s)	322, 664
HincII	GTYRAC	1 cut(s)	973
HindII	GTYRAC	1 cut(s)	973
HinfI	GANTC	7 cut(s)	10, 85, 177, 329, 665, 964, 994
Hpy166II	GTNNAC	1 cut(s)	973
Hpy188I	TCNGA	6 cut(s)	313, 459, 587, 607, 712, 999
Hpy188III	TCNNGA	3 cut(s)	302, 365, 745
Hpy8I	GTNNAC	1 cut(s)	973
HpyAV	CCTTC	5 cut(s)	28, 103, 279, 513, 818
HpyCH4III	ACNGT	4 cut(s)	438, 826, 845, 1109
HpyCH4IV	ACGT	1 cut(s)	1005
HpyCH4V	TGCA	7 cut(s)	174, 356, 613, 907, 932, 1023, 1118
HpyF10VI	GCNNNNNNNGC	1 cut(s)	929
HpyF3I	CTNAG	2 cut(s)	576, 584
HpySE526I	ACGT	1 cut(s)	1005
Hsp92II	CATG	2 cut(s)	322, 664
Kzo9I	GATC	3 cut(s)	206, 901, 947
LmnI	GCTCC	1 cut(s)	869
Lsp1109I	GCAGC	3 cut(s)	432, 507, 1060
LweI	GCATC	2 cut(s)	507, 694
MabI	ACCWGGT	1 cut(s)	358
MaeI	CTAG	4 cut(s)	74, 149, 284, 968
MaeII	ACGT	1 cut(s)	1005
MalI	GATC	3 cut(s)	208, 903, 949
MboI	GATC	3 cut(s)	206, 901, 947
MboII	GAAGA	2 cut(s)	847, 922
MfeI	CAATTG	4 cut(s)	54, 129, 887, 936
MflI	RGATCY	2 cut(s)	206, 947
MhlI	GDGCHC	1 cut(s)	648
MlsI	TGGCCA	1 cut(s)	1089
MluNI	TGGCCA	1 cut(s)	1089
MlyI	GAGTC	1 cut(s)	1003
MmeI	TCCRAC	2 cut(s)	645, 975
Mox20I	TGGCCA	1 cut(s)	1089
MscI	TGGCCA	1 cut(s)	1089
MseI	TTAA	5 cut(s)	158, 212, 374, 560, 755
Msp20I	TGGCCA	1 cut(s)	1089
MspR9I	CCNGG	2 cut(s)	164, 360
MunI	CAATTG	4 cut(s)	54, 129, 887, 936
Mva1269I	GAATGC	1 cut(s)	423
MvaI	CCWGG	2 cut(s)	164, 360
MwoI	GCNNNNNNNGC	1 cut(s)	929
NdeII	GATC	3 cut(s)	206, 901, 947
NlaIII	CATG	2 cut(s)	322, 664
NlaIV	GGNNCC	1 cut(s)	949
NspI	RCATGY	1 cut(s)	322
PctI	GAATGC	1 cut(s)	423
PfeI	GAWTC	6 cut(s)	10, 85, 177, 329, 665, 964
PfoI	TCCNGGA	1 cut(s)	162
PkrI	GCNGC	4 cut(s)	422, 497, 535, 1075
PleI	GAGTC	1 cut(s)	1002
PpsI	GAGTC	1 cut(s)	1002
PpuMI	RGGWCCY	2 cut(s)	28, 103
PshBI	ATTAAT	1 cut(s)	755
Psp5II	RGGWCCY	2 cut(s)	28, 103
Psp6I	CCWGG	2 cut(s)	162, 358
PspGI	CCWGG	2 cut(s)	162, 358
PspN4I	GGNNCC	1 cut(s)	949
PspPI	GGNCC	6 cut(s)	28, 103, 185, 257, 304, 638
PspPPI	RGGWCCY	2 cut(s)	28, 103
PstI	CTGCAG	2 cut(s)	909, 1025
PsuI	RGATCY	2 cut(s)	206, 947
RsaI	GTAC	3 cut(s)	540, 573, 856
RsaNI	GTAC	3 cut(s)	539, 572, 855
SaqAI	TTAA	5 cut(s)	158, 212, 374, 560, 755
SatI	GCNGC	4 cut(s)	421, 496, 534, 1074
Sau3AI	GATC	3 cut(s)	206, 901, 947
Sau96I	GGNCC	6 cut(s)	28, 103, 185, 257, 304, 638
SchI	GAGTC	1 cut(s)	1003
ScrFI	CCNGG	2 cut(s)	164, 360
SduI	GDGCHC	1 cut(s)	648
SexAI	ACCWGGT	1 cut(s)	358
SfaNI	GCATC	2 cut(s)	507, 694
SfcI	CTRYAG	3 cut(s)	905, 1021, 1078
SinI	GGWCC	5 cut(s)	28, 103, 185, 257, 304
SmlI	CTYRAG	1 cut(s)	792
SmoI	CTYRAG	1 cut(s)	792
SsiI	CCGC	1 cut(s)	533
SspMI	CTAG	4 cut(s)	74, 149, 284, 968
StyD4I	CCNGG	2 cut(s)	162, 358
TaaI	ACNGT	4 cut(s)	438, 826, 845, 1109
TaiI	ACGT	1 cut(s)	1008
TauI	GCSGC	1 cut(s)	536
TfiI	GAWTC	6 cut(s)	10, 85, 177, 329, 665, 964
Tru1I	TTAA	5 cut(s)	158, 212, 374, 560, 755
Tru9I	TTAA	5 cut(s)	158, 212, 374, 560, 755
TscAI	CASTG	3 cut(s)	648, 831, 1030
TseI	GCWGC	3 cut(s)	420, 495, 1073
TspDTI	ATGAA	2 cut(s)	383, 546
TspRI	CASTG	3 cut(s)	648, 831, 1030
VpaK11BI	GGWCC	5 cut(s)	28, 103, 185, 257, 304
VspI	ATTAAT	1 cut(s)	755
XapI	RAATTY	2 cut(s)	553, 814
XceI	RCATGY	1 cut(s)	322
XspI	CTAG	4 cut(s)	74, 149, 284, 968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.