Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004586

Physical Location & Seq

Genomic Coordinates Forward (+)

5298680 .. 5301404

Gene Structure 2725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g08970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGATGAGGTACAGAGATTCCTGGAATAACACACCATCTAGCTGGGAAGACTCCGATGATCCCTGCGGTGTGCCATGGGAAGGAGTCAGCTGCACTGGTGCAAGGGTGACTGAATTGAGTTTATCAGCCATGGGGCTCATAGGGGAACTTGCCACTGGCTACATTGGGCAACTCAGTGAACTGACGTCTTTGGACGTTTCATTCAACCCTGGCCTCACAGGTCAAATTTCTATACAAATATCATTTCTCCAAAAGTTAAAGACCCTGAACCTAGCTGGATGCAGCTTCAGTGGTTTTATTCCAGATTCGTTTGGAGATCTTGAACAGCTGACATTCTTGGCTATGAATTCAAACAACTTATCTGATATAATACCTTCTGAATTGGGTCAACTCTCCAACCTCTACTTTCTTGATCTATCGGACAATCATCTGACTGGGCCTCTCCCAATCTCAAGCAATATTACTTATGGTGGACTAGACCTCTTGTTAAAGGCTCAACACTTCCATTTGAGCAACAACCAGCTCTCAGGTTCCATTCCACCTGAGCTTTTCAGCTCTGAGATGAGTCTGATTCATCTGTTCCTAGACGGTAATAATTTTACCGGGGTTATTCCAGAAACATTAGGACTTGTTCAGACTCTTGAGATGGTTCAGCTTGATAAAAACTTTCTGACTGGAACTGTCCCCTCAAACCTTAACAACCTTACAAATGTCAATGAACTGAATTTGGCCAACAACAACTTGACAGGCCCTTTGCCTGACTTGACCGGAATGAATTCCCTCAATTATGTAGACCTTAGTAACAACTCATTTGACCCATCAGAAGCTCCGCTTTGGTTCTCAACCTTACCCAAACTCGCTAATCTGGTTATGGAATTCGGATCACTTCAAGGACTTGTGCCTGAGAAGCTATTCAGCCTTCCCGAATTACAGCAAGTGAAACTGAAAAACAATACGTTTAATGATACATTGAACATGGGTGATAACATCAGTCTACAACTGGAGCTTGTGGATCTCCAGAACAATCAAATTTCCCTGCTTGTTCTAGGATACGAATACAAAAAGGCATTACTACTTAAAGGAAACCCAATATGCTCCGGTGGTGGTCAAAATACTACTTTCTGTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko04152 ko04921 map03008 map04152 map04921

Pfam Domains

Protein Families

EFG_C EFG_II EFG_IV GTP_EFTU GTP_EFTU_D2

Protein Analysis

377

Amino Acids

40.97

Weight (kDa)

4.22

Isoelectric Point (pI)

26.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	85 - 144	3.1e-08	Leucine rich repeat
LRR_8	PF13855	213 - 270	8e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49750
fragaria_vesca	FvH4_6g08970 FvH4_6g09001
prunus_persica	Prupe.6G301700_v2.0.a1
rosa_laevigata	RLG00000025099
rosa_multiflora	Rmu_co8402051.1_g000001 Rmu_sc0002435.1_g000001 Rmu_sc0010702.1_g000004 Rmu_sc0022643.1_g000002 Rmu_sc0035588.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241190 Rroxscaffold_6G00420360 Rroxscaffold_6G00420370
rosa_rugosa	Rorug03G0034500 Rorug03G0034500 Rorug03G0034600 Rorug03G0034700 Rorug03G0034800
rosa_samantha	Rh2AG320500 Rh3AG092500 Rh3AG092600 Rh3BG095700 Rh3CG096500 Rh3CG096700 Rh3DG096200 Rh3DG096300 Rh4AG031900
rosa_wichuraiana	Rw3G007950 Rw3G007960 Rw6G021920 Rw7G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	188
AccI	GTMKAC	2 cut(s)	792, 994
AciI	CCGC	2 cut(s)	66, 830
AclWI	GGATC	3 cut(s)	53, 889, 1020
AcoI	YGGCCR	1 cut(s)	729
AcsI	RAATTY	6 cut(s)	225, 346, 724, 775, 875, 1029
AcuI	CTGAAG	1 cut(s)	271
AcyI	GRCGYC	1 cut(s)	185
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	5 cut(s)	205, 323, 351, 890, 973
AjnI	CCWGG	2 cut(s)	20, 208
AlwI	GGATC	3 cut(s)	53, 889, 1020
AoxI	GGCC	4 cut(s)	211, 437, 729, 748
ApeKI	GCWGC	2 cut(s)	90, 282
ApoI	RAATTY	6 cut(s)	225, 346, 724, 775, 875, 1029
ArsI	GACNNNNNNTTYG	2 cut(s)	736, 768
Asp700I	GAANNNNTTC	2 cut(s)	775, 911
AspS9I	GGNCC	2 cut(s)	437, 749
AsuC2I	CCSGG	1 cut(s)	604
AsuHPI	GGTGA	2 cut(s)	118, 992
BalI	TGGCCA	1 cut(s)	731
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	77, 294
BccI	CCATC	3 cut(s)	43, 640, 826
BciT130I	CCWGG	2 cut(s)	22, 210
BciVI	GTATCC	1 cut(s)	1043
BcnI	CCSGG	1 cut(s)	604
BfaI	CTAG	5 cut(s)	39, 272, 476, 584, 1046
BfuI	GTATCC	1 cut(s)	1043
BglII	AGATCT	1 cut(s)	316
BisI	GCNGC	2 cut(s)	91, 283
BlsI	GCNGC	2 cut(s)	92, 284
Bme1390I	CCNGG	3 cut(s)	22, 210, 604
BmgT120I	GGNCC	2 cut(s)	437, 749
BmiI	GGNNCC	1 cut(s)	532
BmrFI	CCNGG	3 cut(s)	22, 210, 604
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	1 cut(s)	269
BmuI	ACTGGG	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	2 cut(s)	1001, 1022
Bpu10I	CCTNAGC	1 cut(s)	543
BpuEI	CTTGAG	2 cut(s)	436, 662
BpuMI	CCSGG	1 cut(s)	604
BsaHI	GRCGYC	1 cut(s)	185
BsaJI	CCNNGG	4 cut(s)	74, 129, 208, 603
BsaWI	WCCGGW	2 cut(s)	767, 1097
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse1I	ACTGG	5 cut(s)	100, 160, 439, 679, 1005
BseBI	CCWGG	2 cut(s)	22, 210
BseDI	CCNNGG	4 cut(s)	74, 129, 208, 603
BseGI	GGATG	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMII	CTCAG	5 cut(s)	187, 534, 540, 549, 894
BseNI	ACTGG	5 cut(s)	100, 160, 439, 679, 1005
BseXI	GCAGC	2 cut(s)	77, 294
BseYI	CCCAGC	1 cut(s)	42
BsgI	GTGCAG	1 cut(s)	76
BshFI	GGCC	4 cut(s)	213, 439, 731, 750
BsiSI	CCGG	3 cut(s)	603, 768, 1098
BslFI	GGGAC	1 cut(s)	668
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	668
BsnI	GGCC	4 cut(s)	213, 439, 731, 750
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	5 cut(s)	58, 316, 412, 881, 1012
Bsp19I	CCATGG	2 cut(s)	74, 129
BspACI	CCGC	2 cut(s)	66, 830
BspANI	GGCC	4 cut(s)	213, 439, 731, 750
BspCNI	CTCAG	5 cut(s)	186, 535, 539, 550, 895
BspLI	GGNNCC	1 cut(s)	532
BspPI	GGATC	3 cut(s)	53, 889, 1020
BsrI	ACTGG	5 cut(s)	100, 160, 439, 679, 1005
BssECI	CCNNGG	4 cut(s)	74, 129, 208, 603
BssMI	GATC	5 cut(s)	58, 316, 412, 881, 1012
BssNI	GRCGYC	1 cut(s)	185
BssT1I	CCWWGG	2 cut(s)	74, 129
Bst2UI	CCWGG	2 cut(s)	22, 210
Bst4CI	ACNGT	2 cut(s)	590, 682
BstACI	GRCGYC	1 cut(s)	185
BstDEI	CTNAG	6 cut(s)	173, 526, 543, 558, 797, 903
BstDSI	CCRYGG	2 cut(s)	74, 129
BstF5I	GGATG	1 cut(s)	284
BstKTI	GATC	5 cut(s)	61, 319, 415, 884, 1015
BstMBI	GATC	5 cut(s)	58, 316, 412, 881, 1012
BstMWI	GCNNNNNNNGC	1 cut(s)	907
BstNI	CCWGG	2 cut(s)	22, 210
BstSCI	CCNGG	3 cut(s)	20, 208, 602
BstV1I	GCAGC	2 cut(s)	77, 294
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	2 cut(s)	316, 1012
BstXI	CCANNNNNNTGG	1 cut(s)	42
BstYI	RGATCY	2 cut(s)	316, 1012
BsuI	GTATCC	1 cut(s)	1043
BsuRI	GGCC	4 cut(s)	213, 439, 731, 750
BtgI	CCRYGG	2 cut(s)	74, 129
BtsCI	GGATG	1 cut(s)	284
BtsIMutI	CAGTG	4 cut(s)	93, 153, 181, 295
Cfr13I	GGNCC	2 cut(s)	437, 749
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	3 cut(s)	75, 130, 976
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	6 cut(s)	173, 526, 543, 558, 797, 903
DpnI	GATC	5 cut(s)	60, 318, 414, 883, 1014
DpnII	GATC	5 cut(s)	58, 316, 412, 881, 1012
EaeI	YGGCCR	1 cut(s)	729
Eco130I	CCWWGG	2 cut(s)	74, 129
Eco24I	GRGCYC	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	749
EcoRI	GAATTC	3 cut(s)	346, 775, 875
EcoRII	CCWGG	2 cut(s)	20, 208
EcoT14I	CCWWGG	2 cut(s)	74, 129
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	2 cut(s)	74, 129
FaeI	CATG	3 cut(s)	78, 133, 979
FalI	AAGNNNNNCTT	2 cut(s)	816, 848
FaqI	GGGAC	1 cut(s)	668
FatI	CATG	3 cut(s)	74, 129, 975
FblI	GTMKAC	2 cut(s)	792, 994
Fnu4HI	GCNGC	2 cut(s)	91, 283
FokI	GGATG	1 cut(s)	291
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	91, 283
FspBI	CTAG	5 cut(s)	39, 272, 476, 584, 1046
GluI	GCNGC	2 cut(s)	91, 283
GsaI	CCCAGC	1 cut(s)	46
GsuI	CTGGAG	2 cut(s)	1001, 1022
HaeIII	GGCC	4 cut(s)	213, 439, 731, 750
HapII	CCGG	3 cut(s)	603, 768, 1098
Hin1I	GRCGYC	1 cut(s)	185
Hin1II	CATG	3 cut(s)	78, 133, 979
HincII	GTYRAC	1 cut(s)	389
HindII	GTYRAC	1 cut(s)	389
HinfI	GANTC	7 cut(s)	17, 50, 84, 305, 565, 571, 637
HpaII	CCGG	3 cut(s)	603, 768, 1098
HphI	GGTGA	2 cut(s)	118, 992
Hpy166II	GTNNAC	5 cut(s)	179, 389, 473, 793, 995
Hpy188III	TCNNGA	7 cut(s)	302, 320, 410, 614, 641, 923, 1018
Hpy8I	GTNNAC	5 cut(s)	179, 389, 473, 793, 995
HpyAV	CCTTC	3 cut(s)	74, 384, 929
HpyCH4III	ACNGT	2 cut(s)	590, 682
HpyCH4IV	ACGT	3 cut(s)	185, 195, 956
HpyCH4V	TGCA	3 cut(s)	93, 101, 282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	907
HpyF3I	CTNAG	6 cut(s)	173, 526, 543, 558, 797, 903
HpySE526I	ACGT	3 cut(s)	185, 195, 956
Hsp92I	GRCGYC	1 cut(s)	185
Hsp92II	CATG	3 cut(s)	78, 133, 979
Kzo9I	GATC	5 cut(s)	58, 316, 412, 881, 1012
LmnI	GCTCC	3 cut(s)	832, 1003, 1100
Lsp1109I	GCAGC	2 cut(s)	77, 294
LweI	GCATC	1 cut(s)	269
MaeI	CTAG	5 cut(s)	39, 272, 476, 584, 1046
MaeII	ACGT	3 cut(s)	185, 195, 956
MaeIII	GTNAC	2 cut(s)	106, 800
MalI	GATC	5 cut(s)	60, 318, 414, 883, 1014
MboI	GATC	5 cut(s)	58, 316, 412, 881, 1012
MboII	GAAGA	1 cut(s)	59
MflI	RGATCY	2 cut(s)	316, 1012
MhlI	GDGCHC	1 cut(s)	138
MlsI	TGGCCA	1 cut(s)	731
MluNI	TGGCCA	1 cut(s)	731
MlyI	GAGTC	4 cut(s)	44, 93, 574, 631
MmeI	TCCRAC	1 cut(s)	420
MnlI	CCTC	6 cut(s)	224, 410, 450, 491, 697, 791
Mox20I	TGGCCA	1 cut(s)	731
MroXI	GAANNNNTTC	2 cut(s)	775, 911
MscI	TGGCCA	1 cut(s)	731
MseI	TTAA	5 cut(s)	257, 488, 696, 960, 1077
Msp20I	TGGCCA	1 cut(s)	731
MspA1I	CMGCKG	2 cut(s)	90, 328
MspI	CCGG	3 cut(s)	603, 768, 1098
MspR9I	CCNGG	3 cut(s)	22, 210, 604
MvaI	CCWGG	2 cut(s)	22, 210
MwoI	GCNNNNNNNGC	1 cut(s)	907
NciI	CCSGG	1 cut(s)	604
NcoI	CCATGG	2 cut(s)	74, 129
NdeII	GATC	5 cut(s)	58, 316, 412, 881, 1012
NlaIII	CATG	3 cut(s)	78, 133, 979
NlaIV	GGNNCC	1 cut(s)	532
NmuCI	GTSAC	1 cut(s)	106
PdmI	GAANNNNTTC	2 cut(s)	775, 911
PfeI	GAWTC	3 cut(s)	17, 305, 571
PfoI	TCCNGGA	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	92, 284
PleI	GAGTC	4 cut(s)	44, 92, 573, 631
PpsI	GAGTC	4 cut(s)	44, 92, 573, 631
Psp6I	CCWGG	2 cut(s)	20, 208
PspFI	CCCAGC	1 cut(s)	42
PspGI	CCWGG	2 cut(s)	20, 208
PspN4I	GGNNCC	1 cut(s)	532
PspPI	GGNCC	2 cut(s)	437, 749
PsuI	RGATCY	2 cut(s)	316, 1012
PvuII	CAGCTG	2 cut(s)	90, 328
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SaqAI	TTAA	5 cut(s)	257, 488, 696, 960, 1077
SatI	GCNGC	2 cut(s)	91, 283
Sau3AI	GATC	5 cut(s)	58, 316, 412, 881, 1012
Sau96I	GGNCC	2 cut(s)	437, 749
SchI	GAGTC	4 cut(s)	44, 93, 574, 631
ScrFI	CCNGG	3 cut(s)	22, 210, 604
SduI	GDGCHC	1 cut(s)	138
SfaNI	GCATC	1 cut(s)	269
SmlI	CTYRAG	2 cut(s)	451, 641
SmoI	CTYRAG	2 cut(s)	451, 641
SsiI	CCGC	2 cut(s)	66, 830
SspI	AATATT	1 cut(s)	460
SspMI	CTAG	5 cut(s)	39, 272, 476, 584, 1046
StyD4I	CCNGG	3 cut(s)	20, 208, 602
StyI	CCWWGG	2 cut(s)	74, 129
TaaI	ACNGT	2 cut(s)	590, 682
TaiI	ACGT	3 cut(s)	188, 198, 959
TfiI	GAWTC	3 cut(s)	17, 305, 571
Tru1I	TTAA	5 cut(s)	257, 488, 696, 960, 1077
Tru9I	TTAA	5 cut(s)	257, 488, 696, 960, 1077
TscAI	CASTG	4 cut(s)	100, 160, 181, 295
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	2 cut(s)	90, 282
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	5 cut(s)	189, 359, 563, 732, 788
TspRI	CASTG	4 cut(s)	100, 160, 181, 295
XapI	RAATTY	6 cut(s)	225, 346, 724, 775, 875, 1029
XmiI	GTMKAC	2 cut(s)	792, 994
XmnI	GAANNNNTTC	2 cut(s)	775, 911
XspI	CTAG	5 cut(s)	39, 272, 476, 584, 1046
ZraI	GACGTC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.