Rh3DG096300
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0004586
Physical Location & Seq
Forward (+)
7587387 .. 7589902
2516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG096300.1

Sequence Viewer

Length: 669 bp
ATGGCAACCATGAGGTTGCTGCTCTTTTTTGCTCTATATTCTGCAGGCATTCATGTGATCTCCTCGCTTACGGACCCCAATGACGCTTCTGTGCTCCATGCCTTGAAAGTGTCCTGGAAAAACACGCCACCGAGCTGGGATAATTCTTCTGATCCCTGTGGTTTTCCATGGGAAGGAGTCAGCTGCAGCGGTGCAAGGGTGACTGAATTGGGATTATCAACCATGGGCCTCATAGGGGAACTCAGTAGCTACATTGAGGGACTCACTGAACTAAACTCCTTGGACCTGTCATTCAACCCTGGACTCCAAGGTCCTCTTCCTCCACAGTTAGGGGATCTCCCAAAGTTAAATATCCTGATCCTAGCTGGCTGCAGCTTCAGTGGCAACATTCCAGATGAGTTGGGAAATCTTGAACAGCTAGCGTTCTTGGCTCTGAATACAAATTACTTCACTGGTAGCATACCTCCTTCTTTAGGTAAGCTCTCCAACCTCTACTGGCTTGATGTGGCAGACAATCAATTGAGCGGACCTCTACCAATTTCGACATCCACTTCTCCAGGCTTAGACCTCTTGTTAAACGCCAAACATTTCCATTTGAACAAGAACCAGCTTTCCGGTTCTATTCCACTCGAGCTTTTCAGCTCCGAGATGATATTGATACATGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 Pkinase_Tyr

Protein Analysis

222

Amino Acids

23.75

Weight (kDa)

4.58

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 26 - 63 3.8e-06 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 309
AccBSI CCGCTC 1 cut(s) 525
AciI CCGC 2 cut(s) 189, 525
AclWI GGATC 3 cut(s) 146, 342, 352
AcuI CTGAAG 1 cut(s) 361
AfiI CCNNNNNNNGG 4 cut(s) 173, 235, 329, 473
AgsI TTSAA 4 cut(s) 106, 295, 413, 598
AjnI CCWGG 3 cut(s) 113, 298, 556
AjuI GAANNNNNNNTTGG 2 cut(s) 300, 332
AloI GAACNNNNNNTCC 2 cut(s) 596, 628
Alw21I GWGCWC 1 cut(s) 96
AlwI GGATC 3 cut(s) 146, 342, 352
Ama87I CYCGRG 1 cut(s) 629
AoxI GGCC 1 cut(s) 226
ApeKI GCWGC 5 cut(s) 19, 183, 186, 369, 372
AspS9I GGNCC 5 cut(s) 73, 226, 283, 311, 527
AsuHPI GGTGA 1 cut(s) 211
AsuNHI GCTAGC 1 cut(s) 418
AvaI CYCGRG 1 cut(s) 629
AvaII GGWCC 4 cut(s) 73, 283, 311, 527
BaeI ACNNNNGTAYC 1 cut(s) 650
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 5 cut(s) 6, 170, 198, 356, 384
BciT130I CCWGG 3 cut(s) 115, 300, 558
BfaI CTAG 2 cut(s) 362, 419
BfmI CTRYAG 3 cut(s) 42, 184, 370
BisI GCNGC 5 cut(s) 20, 184, 187, 370, 373
BlsI GCNGC 5 cut(s) 21, 185, 188, 371, 374
Bme1390I CCNGG 3 cut(s) 115, 300, 558
Bme18I GGWCC 4 cut(s) 73, 283, 311, 527
BmeT110I CYCGRG 1 cut(s) 629
BmgT120I GGNCC 5 cut(s) 73, 226, 283, 311, 527
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 3 cut(s) 115, 300, 558
BmtI GCTAGC 1 cut(s) 422
BplI GAGNNNNNCTC 2 cut(s) 514, 546
BpmI CTGGAG 1 cut(s) 540
BsaJI CCNNGG 5 cut(s) 167, 222, 279, 298, 307
BsaWI WCCGGW 1 cut(s) 614
Bsc4I CCNNNNNNNGG 4 cut(s) 173, 235, 329, 473
Bse1I ACTGG 2 cut(s) 457, 500
BseBI CCWGG 3 cut(s) 115, 300, 558
BseDI CCNNGG 5 cut(s) 167, 222, 279, 298, 307
BseGI GGATG 1 cut(s) 545
BseLI CCNNNNNNNGG 4 cut(s) 173, 235, 329, 473
BseMII CTCAG 1 cut(s) 256
BseNI ACTGG 2 cut(s) 457, 500
BseRI GAGGAG 1 cut(s) 52
BseXI GCAGC 5 cut(s) 6, 170, 198, 356, 384
BseYI CCCAGC 1 cut(s) 135
BshFI GGCC 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 629
BsiSI CCGG 1 cut(s) 615
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 4 cut(s) 173, 235, 329, 473
BsmFI GGGAC 1 cut(s) 273
BsmI GAATGC 1 cut(s) 48
BsnI GGCC 1 cut(s) 228
BsoBI CYCGRG 1 cut(s) 629
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 4 cut(s) 57, 151, 334, 357
Bsp19I CCATGG 2 cut(s) 167, 222
BspACI CCGC 2 cut(s) 189, 525
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 75
BspMAI CTGCAG 3 cut(s) 46, 188, 374
BspOI GCTAGC 1 cut(s) 422
BspPI GGATC 3 cut(s) 146, 342, 352
BsrBI CCGCTC 1 cut(s) 525
BsrI ACTGG 2 cut(s) 457, 500
BssECI CCNNGG 5 cut(s) 167, 222, 279, 298, 307
BssMI GATC 4 cut(s) 57, 151, 334, 357
BssT1I CCWWGG 4 cut(s) 167, 222, 279, 307
Bst2UI CCWGG 3 cut(s) 115, 300, 558
Bst4CI ACNGT 1 cut(s) 327
Bst6I CTCTTC 1 cut(s) 321
BstC8I GCNNGC 3 cut(s) 46, 367, 420
BstDEI CTNAG 2 cut(s) 242, 562
BstDSI CCRYGG 2 cut(s) 167, 222
BstENI CCTNNNNNAGG 1 cut(s) 471
BstF5I GGATG 1 cut(s) 545
BstKTI GATC 4 cut(s) 60, 154, 337, 360
BstMBI GATC 4 cut(s) 57, 151, 334, 357
BstMWI GCNNNNNNNGC 2 cut(s) 381, 428
BstNI CCWGG 3 cut(s) 115, 300, 558
BstNSI RCATGY 1 cut(s) 665
BstSCI CCNGG 3 cut(s) 113, 298, 556
BstSFI CTRYAG 3 cut(s) 42, 184, 370
BstV1I GCAGC 5 cut(s) 6, 170, 198, 356, 384
BstX2I RGATCY 1 cut(s) 334
BstXI CCANNNNNNTGG 1 cut(s) 135
BstYI RGATCY 1 cut(s) 334
BsuRI GGCC 1 cut(s) 228
BtgI CCRYGG 2 cut(s) 167, 222
BtsCI GGATG 1 cut(s) 545
BtsIMutI CAGTG 3 cut(s) 264, 385, 450
Cac8I GCNNGC 3 cut(s) 46, 367, 420
Cfr13I GGNCC 5 cut(s) 73, 226, 283, 311, 527
CseI GACGC 1 cut(s) 92
CviAII CATG 6 cut(s) 10, 53, 98, 168, 223, 662
DdeI CTNAG 2 cut(s) 242, 562
DpnI GATC 4 cut(s) 59, 153, 336, 359
DpnII GATC 4 cut(s) 57, 151, 334, 357
DrdI GACNNNNNNGTC 1 cut(s) 309
DseDI GACNNNNNNGTC 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco130I CCWWGG 4 cut(s) 167, 222, 279, 307
Eco47I GGWCC 4 cut(s) 73, 283, 311, 527
Eco57I CTGAAG 1 cut(s) 361
Eco88I CYCGRG 1 cut(s) 629
EcoNI CCTNNNNNAGG 1 cut(s) 471
EcoO109I RGGNCCY 1 cut(s) 311
EcoRII CCWGG 3 cut(s) 113, 298, 556
EcoT14I CCWWGG 4 cut(s) 167, 222, 279, 307
ErhI CCWWGG 4 cut(s) 167, 222, 279, 307
FaeI CATG 6 cut(s) 13, 56, 101, 171, 226, 665
FaiI YATR 9 cut(s) 11, 37, 54, 99, 169, 224, 233, 461, 663
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FaqI GGGAC 1 cut(s) 273
FatI CATG 6 cut(s) 9, 52, 97, 167, 222, 661
Fnu4HI GCNGC 5 cut(s) 20, 184, 187, 370, 373
FokI GGATG 1 cut(s) 532
Fsp4HI GCNGC 5 cut(s) 20, 184, 187, 370, 373
FspBI CTAG 2 cut(s) 362, 419
GluI GCNGC 5 cut(s) 20, 184, 187, 370, 373
GsaI CCCAGC 1 cut(s) 139
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 1 cut(s) 228
HapII CCGG 1 cut(s) 615
HgaI GACGC 1 cut(s) 92
Hin1II CATG 6 cut(s) 13, 56, 101, 171, 226, 665
HinfI GANTC 3 cut(s) 177, 261, 303
HpaII CCGG 1 cut(s) 615
HphI GGTGA 1 cut(s) 211
Hpy188I TCNGA 3 cut(s) 151, 435, 646
Hpy188III TCNNGA 3 cut(s) 355, 392, 410
HpyAV CCTTC 2 cut(s) 167, 477
HpyCH4III ACNGT 1 cut(s) 327
HpyCH4V TGCA 4 cut(s) 44, 186, 194, 372
HpyF10VI GCNNNNNNNGC 2 cut(s) 381, 428
HpyF3I CTNAG 2 cut(s) 242, 562
Hsp92II CATG 6 cut(s) 13, 56, 101, 171, 226, 665
Kzo9I GATC 4 cut(s) 57, 151, 334, 357
LmnI GCTCC 2 cut(s) 99, 647
Lsp1109I GCAGC 5 cut(s) 6, 170, 198, 356, 384
MaeI CTAG 2 cut(s) 362, 419
MaeIII GTNAC 1 cut(s) 199
MalI GATC 4 cut(s) 59, 153, 336, 359
MbiI CCGCTC 1 cut(s) 525
MboI GATC 4 cut(s) 57, 151, 334, 357
MboII GAAGA 2 cut(s) 138, 308
MfeI CAATTG 1 cut(s) 518
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 5 cut(s) 142, 206, 442, 518, 537
MlyI GAGTC 3 cut(s) 186, 255, 297
MmeI TCCRAC 1 cut(s) 510
MseI TTAA 2 cut(s) 347, 575
MslI CAYNNNNRTG 1 cut(s) 53
MspA1I CMGCKG 2 cut(s) 183, 189
MspI CCGG 1 cut(s) 615
MspR9I CCNGG 3 cut(s) 115, 300, 558
MunI CAATTG 1 cut(s) 518
Mva1269I GAATGC 1 cut(s) 48
MvaI CCWGG 3 cut(s) 115, 300, 558
MwoI GCNNNNNNNGC 2 cut(s) 381, 428
NcoI CCATGG 2 cut(s) 167, 222
NdeII GATC 4 cut(s) 57, 151, 334, 357
NheI GCTAGC 1 cut(s) 418
NlaIII CATG 6 cut(s) 13, 56, 101, 171, 226, 665
NlaIV GGNNCC 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 199
NspI RCATGY 1 cut(s) 665
PaeR7I CTCGAG 1 cut(s) 629
PctI GAATGC 1 cut(s) 48
PfoI TCCNGGA 1 cut(s) 113
PkrI GCNGC 5 cut(s) 21, 185, 188, 371, 374
PleI GAGTC 3 cut(s) 185, 255, 297
PpsI GAGTC 3 cut(s) 185, 255, 297
PpuMI RGGWCCY 1 cut(s) 311
Psp5II RGGWCCY 1 cut(s) 311
Psp6I CCWGG 3 cut(s) 113, 298, 556
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 3 cut(s) 113, 298, 556
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 5 cut(s) 73, 226, 283, 311, 527
PspPPI RGGWCCY 1 cut(s) 311
PspXI VCTCGAGB 1 cut(s) 629
PstI CTGCAG 3 cut(s) 46, 188, 374
PsuI RGATCY 1 cut(s) 334
PvuII CAGCTG 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 2 cut(s) 347, 575
SatI GCNGC 5 cut(s) 20, 184, 187, 370, 373
Sau3AI GATC 4 cut(s) 57, 151, 334, 357
Sau96I GGNCC 5 cut(s) 73, 226, 283, 311, 527
SchI GAGTC 3 cut(s) 186, 255, 297
ScrFI CCNGG 3 cut(s) 115, 300, 558
SduI GDGCHC 1 cut(s) 96
SfcI CTRYAG 3 cut(s) 42, 184, 370
Sfr274I CTCGAG 1 cut(s) 629
SinI GGWCC 4 cut(s) 73, 283, 311, 527
SlaI CTCGAG 1 cut(s) 629
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 5 cut(s) 142, 206, 442, 518, 537
SsiI CCGC 2 cut(s) 189, 525
SspMI CTAG 2 cut(s) 362, 419
StyD4I CCNGG 3 cut(s) 113, 298, 556
StyI CCWWGG 4 cut(s) 167, 222, 279, 307
TaaI ACNGT 1 cut(s) 327
TaqI TCGA 2 cut(s) 542, 630
TasI AATT 5 cut(s) 142, 206, 442, 518, 537
Tru1I TTAA 2 cut(s) 347, 575
Tru9I TTAA 2 cut(s) 347, 575
TscAI CASTG 3 cut(s) 271, 385, 457
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 5 cut(s) 19, 183, 186, 369, 372
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 41
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 3 cut(s) 271, 385, 457
VpaK11BI GGWCC 4 cut(s) 73, 283, 311, 527
XagI CCTNNNNNAGG 1 cut(s) 471
XceI RCATGY 1 cut(s) 665
XhoI CTCGAG 1 cut(s) 629
XspI CTAG 2 cut(s) 362, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.