Rmu_co8402051.1_g000001

GTPase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8402051.1
OG0004586
Physical Location & Seq
Reverse (-)
1 .. 557
557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8402051.1_g000001.1.cds

Sequence Viewer

Length: 266 bp
atgatgatcttgagagattcatggaaaaacacaccatctagctgggaacactccgatgatccctgtggagtgccatgggaaggagtcaactgcactggtgcaagggtgactgaattgaggttatcagccatggggctcataggggaactttccaccggctacattgggcaactcgatgaactaacgtctttggatgtgtcattcaatcctggcatcacaggtcgtatttctccacaaatatcatttctcctgaagttaaataccct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko04152 ko04921 map03008 map04152 map04921
Pfam Domains
Protein Families
EFG_C EFG_II EFG_IV GTP_EFTU GTP_EFTU_D2

Protein Analysis

89

Amino Acids

9.74

Weight (kDa)

4.64

Isoelectric Point (pI)

23.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 1 cut(s) 205
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 1 cut(s) 42
AluI AGCT 1 cut(s) 42
AlwI GGATC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 118
BanII GRGCYC 1 cut(s) 138
BccI CCATC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 210
BfaI CTAG 1 cut(s) 39
Bme1390I CCNGG 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 31
BsaJI CCNNGG 2 cut(s) 74, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 74, 129
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 100
BseYI CCCAGC 1 cut(s) 42
BsgI GTGCAG 1 cut(s) 76
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 2 cut(s) 6, 58
Bsp19I CCATGG 2 cut(s) 74, 129
BspPI GGATC 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 1 cut(s) 100
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 74, 129
BssMI GATC 2 cut(s) 6, 58
BssT1I CCWWGG 2 cut(s) 74, 129
Bst2UI CCWGG 1 cut(s) 210
BstDSI CCRYGG 2 cut(s) 74, 129
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 2 cut(s) 9, 61
BstMBI GATC 2 cut(s) 6, 58
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstXI CCANNNNNNTGG 1 cut(s) 42
BtgI CCRYGG 2 cut(s) 74, 129
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 155
CviAII CATG 3 cut(s) 21, 75, 130
CviJI RGCY 4 cut(s) 42, 128, 136, 159
CviKI_1 RGCY 4 cut(s) 42, 128, 136, 159
DpnI GATC 2 cut(s) 8, 60
DpnII GATC 2 cut(s) 6, 58
Eco130I CCWWGG 2 cut(s) 74, 129
Eco24I GRGCYC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 208
EcoT14I CCWWGG 2 cut(s) 74, 129
EcoT38I GRGCYC 1 cut(s) 138
ErhI CCWWGG 2 cut(s) 74, 129
FaeI CATG 3 cut(s) 24, 78, 133
FaiI YATR 4 cut(s) 22, 76, 131, 140
FatI CATG 3 cut(s) 20, 74, 129
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 1 cut(s) 138
FspBI CTAG 1 cut(s) 39
GsaI CCCAGC 1 cut(s) 46
HapII CCGG 1 cut(s) 156
Hin1II CATG 3 cut(s) 24, 78, 133
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 2 cut(s) 17, 84
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 2 cut(s) 10, 250
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 2 cut(s) 93, 101
HpySE526I ACGT 1 cut(s) 185
Hsp92II CATG 3 cut(s) 24, 78, 133
Kzo9I GATC 2 cut(s) 6, 58
LpnPI CCDG 7 cut(s) 28, 76, 81, 169, 195, 204, 222
LweI GCATC 1 cut(s) 222
MaeI CTAG 1 cut(s) 39
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 106
MalI GATC 2 cut(s) 8, 60
MboI GATC 2 cut(s) 6, 58
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 1 cut(s) 113
MlyI GAGTC 1 cut(s) 93
MnlI CCTC 1 cut(s) 111
MseI TTAA 1 cut(s) 257
MslI CAYNNNNRTG 1 cut(s) 54
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 210
NcoI CCATGG 2 cut(s) 74, 129
NdeII GATC 2 cut(s) 6, 58
NlaIII CATG 3 cut(s) 24, 78, 133
NmuCI GTSAC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 17
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 208
PspFI CCCAGC 1 cut(s) 42
PspGI CCWGG 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 54
SaqAI TTAA 1 cut(s) 257
Sau3AI GATC 2 cut(s) 6, 58
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 1 cut(s) 138
SetI ASST 4 cut(s) 44, 122, 188, 223
SfaNI GCATC 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 1 cut(s) 113
SspMI CTAG 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 208
StyI CCWWGG 2 cut(s) 74, 129
TaiI ACGT 1 cut(s) 188
TaqI TCGA 1 cut(s) 174
TasI AATT 1 cut(s) 113
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 2 cut(s) 9, 192
TspRI CASTG 1 cut(s) 100
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.