Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004586

Physical Location & Seq

Genomic Coordinates Forward (+)

7398912 .. 7401534

Gene Structure 2623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G007950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGCAACTATGAGATTGCTGCTCTTTCTTGCTTTATACTCTGTAGGGATTCATGTGATCTCCTCTCTTACGGACCAAAATGACGCTACGGTGATGATGATCTTGAGAGATTCATGGAAAAACACACCATCTAGCTGGGAACACTCCGATGATCCCTGTGGAGTGCCATGGGAAGGAGTCAACTGTACTGGTGCAAGGGTGACTGAATTGAGGTTATCAGCCATGGGGCTCATAGGGGAACTTTCCAGCGGCTACATTGGGCAACTCGATGAACTAACGTCTTTGGATGTGTCATTCAATCCTGGCATCACAGGTCGTATTTCTCCACAAATATCATTTCTCCTGAAGTTAAATACCCTGAACCTAGCTGGATGCAGCTTCAGTGGTAGTATTCCAGATCAGTTGGGAGATATTGAACAGCTAACCTTCTTGGCTCTGAATTCAAATAACTTATCTGGAACAATACCTTCTGCTTTGGGTCAACTCTCCAACCTCTACTTGCTTGATCTATCAGACAATCAGCTGACTGGACCTCTCCCAATCTCAACCTCTACTTCTCCAGGAGGATTAGACCTGTTGTTAAAGGCTGAACACTTCCATTTGAGCAACAACCAGCTTTCAGGTTCCATTCCACCCGAGCTTTTCAGTTCTGAAATGAGACTGATTCATCTGTTCCTTGATGGAAATAAACTTACCGGGGTTATTCCAATGACTTTAGGACTTGTTCAGACTTTTGAGATGGTTCGGCTTAATAAAAATACTCTGACCGGAAGTGTCCCCTCAAACCTAAACAACCTTACAAATGTCAATGAACTGAATTTGGCCAACAACAACTTGACAGGCCTTTTGCCAGACTTGACTGGAATGAATTCCCTCAATTATGTAGACCTTAGTAACAACTCATTTGACCCATCAGTAGCTCCACTTTGGTTCTCAACCTTACCCACACTTACTACTCTGGTTATGGAATTCGGATCACTTCAAGGGCCTGTGCCAGAGAATCTTTTCAGCCTTCCAGAATTACAGGAAGTGAAACTGAAATACAATACATTTAACGGTACACTGAACATGGGTGATAACATCAGTCTACAACTGGAGCTTGTGGATCTCCAGAACAATCAGATTTCCCATCTCACTATAGAAGAAGAATACAAGGATGCATTAATACTTAAAGGGAACCCGATATGCTCCGGTAGTCTGTCAAACACTACTTGGTGTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase_Tyr

Protein Analysis

407

Amino Acids

44.17

Weight (kDa)

4.39

Isoelectric Point (pI)

28.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49750
fragaria_vesca	FvH4_6g08970 FvH4_6g09001
prunus_persica	Prupe.6G301700_v2.0.a1
rosa_laevigata	RLG00000025099
rosa_multiflora	Rmu_co8402051.1_g000001 Rmu_sc0002435.1_g000001 Rmu_sc0010702.1_g000004 Rmu_sc0022643.1_g000002 Rmu_sc0035588.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241190 Rroxscaffold_6G00420360 Rroxscaffold_6G00420370
rosa_rugosa	Rorug03G0034500 Rorug03G0034500 Rorug03G0034600 Rorug03G0034700 Rorug03G0034800
rosa_samantha	Rh2AG320500 Rh3AG092500 Rh3AG092600 Rh3BG095700 Rh3CG096500 Rh3CG096700 Rh3DG096200 Rh3DG096300 Rh4AG031900
rosa_wichuraiana	Rw3G007950 Rw3G007960 Rw6G021920 Rw7G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	885, 1087
AciI	CCGC	1 cut(s)	249
AclWI	GGATC	3 cut(s)	146, 982, 1113
AcoI	YGGCCR	1 cut(s)	822
AcsI	RAATTY	4 cut(s)	439, 817, 868, 968
AcuI	CTGAAG	2 cut(s)	364, 365
AfaI	GTAC	2 cut(s)	187, 1060
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	4 cut(s)	298, 416, 444, 983
AjnI	CCWGG	2 cut(s)	301, 559
AluBI	AGCT	9 cut(s)	135, 368, 378, 421, 523, 616, 640, 920, 1099
AluI	AGCT	9 cut(s)	135, 368, 378, 421, 523, 616, 640, 920, 1099
Alw26I	GTCTC	1 cut(s)	652
AlwI	GGATC	3 cut(s)	146, 982, 1113
Ama87I	CYCGRG	1 cut(s)	635
AoxI	GGCC	3 cut(s)	822, 841, 986
ApeKI	GCWGC	2 cut(s)	19, 375
ApoI	RAATTY	4 cut(s)	439, 817, 868, 968
ArsI	GACNNNNNNTTYG	2 cut(s)	829, 861
AseI	ATTAAT	1 cut(s)	1163
Asp700I	GAANNNNTTC	2 cut(s)	868, 1004
AspS9I	GGNCC	3 cut(s)	73, 530, 986
AsuC2I	CCSGG	1 cut(s)	697
AsuHPI	GGTGA	3 cut(s)	103, 211, 1085
AvaI	CYCGRG	1 cut(s)	635
AvaII	GGWCC	2 cut(s)	73, 530
BalI	TGGCCA	1 cut(s)	824
BanII	GRGCYC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	6, 387
BccI	CCATC	5 cut(s)	136, 674, 733, 919, 1137
BciT130I	CCWGG	2 cut(s)	303, 561
BcnI	CCSGG	1 cut(s)	697
BcoDI	GTCTC	1 cut(s)	652
BfaI	CTAG	2 cut(s)	132, 365
BfmI	CTRYAG	2 cut(s)	42, 1137
BisI	GCNGC	3 cut(s)	20, 250, 376
BlsI	GCNGC	3 cut(s)	21, 251, 377
Bme1390I	CCNGG	3 cut(s)	303, 561, 697
Bme18I	GGWCC	2 cut(s)	73, 530
BmeT110I	CYCGRG	1 cut(s)	635
BmgT120I	GGNCC	3 cut(s)	73, 530, 986
BmiI	GGNNCC	2 cut(s)	625, 1178
BmrFI	CCNGG	3 cut(s)	303, 561, 697
BmsI	GCATC	3 cut(s)	315, 362, 1147
BpmI	CTGGAG	3 cut(s)	543, 1094, 1115
BpuEI	CTTGAG	1 cut(s)	124
BpuMI	CCSGG	1 cut(s)	697
BsaBI	GATNNNNATC	1 cut(s)	98
BsaJI	CCNNGG	3 cut(s)	167, 222, 696
BsaWI	WCCGGW	2 cut(s)	767, 1190
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	4 cut(s)	193, 532, 865, 1098
Bse8I	GATNNNNATC	1 cut(s)	98
BseBI	CCWGG	2 cut(s)	303, 561
BseDI	CCNNGG	3 cut(s)	167, 222, 696
BseGI	GGATG	3 cut(s)	292, 377, 1162
BseJI	GATNNNNATC	1 cut(s)	98
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseNI	ACTGG	4 cut(s)	193, 532, 865, 1098
BseRI	GAGGAG	1 cut(s)	52
BseXI	GCAGC	2 cut(s)	6, 387
BseYI	CCCAGC	1 cut(s)	135
BshFI	GGCC	3 cut(s)	824, 843, 988
BsiHKCI	CYCGRG	1 cut(s)	635
BsiSI	CCGG	3 cut(s)	696, 768, 1191
BslFI	GGGAC	1 cut(s)	761
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	652
BsmFI	GGGAC	1 cut(s)	761
BsnI	GGCC	3 cut(s)	824, 843, 988
BsoBI	CYCGRG	1 cut(s)	635
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	7 cut(s)	57, 99, 151, 397, 505, 974, 1105
Bsp19I	CCATGG	2 cut(s)	167, 222
BspACI	CCGC	1 cut(s)	249
BspANI	GGCC	3 cut(s)	824, 843, 988
BspLI	GGNNCC	2 cut(s)	625, 1178
BspPI	GGATC	3 cut(s)	146, 982, 1113
BsrI	ACTGG	4 cut(s)	193, 532, 865, 1098
BssECI	CCNNGG	3 cut(s)	167, 222, 696
BssMI	GATC	7 cut(s)	57, 99, 151, 397, 505, 974, 1105
BssT1I	CCWWGG	2 cut(s)	167, 222
Bst2UI	CCWGG	2 cut(s)	303, 561
Bst4CI	ACNGT	3 cut(s)	91, 185, 1058
BstDEI	CTNAG	1 cut(s)	890
BstDSI	CCRYGG	2 cut(s)	167, 222
BstF5I	GGATG	3 cut(s)	292, 377, 1162
BstKTI	GATC	7 cut(s)	60, 102, 154, 400, 508, 977, 1108
BstMAI	GTCTC	1 cut(s)	652
BstMBI	GATC	7 cut(s)	57, 99, 151, 397, 505, 974, 1105
BstNI	CCWGG	2 cut(s)	303, 561
BstSCI	CCNGG	3 cut(s)	301, 559, 695
BstSFI	CTRYAG	2 cut(s)	42, 1137
BstV1I	GCAGC	2 cut(s)	6, 387
BstX2I	RGATCY	1 cut(s)	1105
BstXI	CCANNNNNNTGG	1 cut(s)	135
BstYI	RGATCY	1 cut(s)	1105
BsuRI	GGCC	3 cut(s)	824, 843, 988
BtgI	CCRYGG	2 cut(s)	167, 222
BtsCI	GGATG	3 cut(s)	292, 377, 1162
BtsIMutI	CAGTG	2 cut(s)	388, 1061
Cfr13I	GGNCC	3 cut(s)	73, 530, 986
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	186, 1059
CviAII	CATG	5 cut(s)	53, 114, 168, 223, 1069
CviQI	GTAC	2 cut(s)	186, 1059
DdeI	CTNAG	1 cut(s)	890
DpnI	GATC	7 cut(s)	59, 101, 153, 399, 507, 976, 1107
DpnII	GATC	7 cut(s)	57, 99, 151, 397, 505, 974, 1105
EaeI	YGGCCR	1 cut(s)	822
Eco130I	CCWWGG	2 cut(s)	167, 222
Eco147I	AGGCCT	1 cut(s)	843
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	2 cut(s)	73, 530
Eco57I	CTGAAG	2 cut(s)	364, 365
Eco88I	CYCGRG	1 cut(s)	635
EcoO109I	RGGNCCY	1 cut(s)	986
EcoRI	GAATTC	3 cut(s)	439, 868, 968
EcoRII	CCWGG	2 cut(s)	301, 559
EcoT14I	CCWWGG	2 cut(s)	167, 222
EcoT22I	ATGCAT	1 cut(s)	1162
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	2 cut(s)	167, 222
FaeI	CATG	5 cut(s)	56, 117, 171, 226, 1072
FaqI	GGGAC	1 cut(s)	761
FatI	CATG	5 cut(s)	52, 113, 167, 222, 1068
FblI	GTMKAC	2 cut(s)	885, 1087
Fnu4HI	GCNGC	3 cut(s)	20, 250, 376
FokI	GGATG	3 cut(s)	299, 384, 1169
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	3 cut(s)	20, 250, 376
FspBI	CTAG	2 cut(s)	132, 365
GluI	GCNGC	3 cut(s)	20, 250, 376
GsaI	CCCAGC	1 cut(s)	139
GsuI	CTGGAG	3 cut(s)	543, 1094, 1115
HaeIII	GGCC	3 cut(s)	824, 843, 988
HapII	CCGG	3 cut(s)	696, 768, 1191
HgaI	GACGC	1 cut(s)	92
Hin1II	CATG	5 cut(s)	56, 117, 171, 226, 1072
HincII	GTYRAC	2 cut(s)	181, 482
HindII	GTYRAC	2 cut(s)	181, 482
HinfI	GANTC	5 cut(s)	49, 110, 177, 664, 1000
HpaII	CCGG	3 cut(s)	696, 768, 1191
HphI	GGTGA	3 cut(s)	103, 211, 1085
Hpy166II	GTNNAC	5 cut(s)	181, 482, 886, 1061, 1088
Hpy188I	TCNGA	8 cut(s)	148, 438, 514, 652, 729, 765, 974, 1122
Hpy188III	TCNNGA	6 cut(s)	103, 343, 395, 456, 1016, 1111
Hpy8I	GTNNAC	5 cut(s)	181, 482, 886, 1061, 1088
HpyAV	CCTTC	4 cut(s)	167, 436, 477, 1022
HpyCH4III	ACNGT	3 cut(s)	91, 185, 1058
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	3 cut(s)	194, 375, 1160
HpyF3I	CTNAG	1 cut(s)	890
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	5 cut(s)	56, 117, 171, 226, 1072
Kzo9I	GATC	7 cut(s)	57, 99, 151, 397, 505, 974, 1105
LmnI	GCTCC	3 cut(s)	925, 1096, 1193
Lsp1109I	GCAGC	2 cut(s)	6, 387
LweI	GCATC	3 cut(s)	315, 362, 1147
MaeI	CTAG	2 cut(s)	132, 365
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	2 cut(s)	199, 893
MalI	GATC	7 cut(s)	59, 101, 153, 399, 507, 976, 1107
MboI	GATC	7 cut(s)	57, 99, 151, 397, 505, 974, 1105
MboII	GAAGA	2 cut(s)	1154, 1157
MflI	RGATCY	1 cut(s)	1105
MhlI	GDGCHC	1 cut(s)	231
MlsI	TGGCCA	1 cut(s)	824
MluCI	AATT	7 cut(s)	206, 439, 817, 868, 877, 968, 1019
MluNI	TGGCCA	1 cut(s)	824
MlyI	GAGTC	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	8 cut(s)	73, 204, 503, 543, 557, 559, 790, 884
Mox20I	TGGCCA	1 cut(s)	824
Mph1103I	ATGCAT	1 cut(s)	1162
MroXI	GAANNNNTTC	2 cut(s)	868, 1004
MscI	TGGCCA	1 cut(s)	824
MseI	TTAA	6 cut(s)	350, 581, 750, 1053, 1163, 1170
MslI	CAYNNNNRTG	1 cut(s)	147
Msp20I	TGGCCA	1 cut(s)	824
MspA1I	CMGCKG	2 cut(s)	249, 523
MspI	CCGG	3 cut(s)	696, 768, 1191
MspR9I	CCNGG	3 cut(s)	303, 561, 697
MvaI	CCWGG	2 cut(s)	303, 561
NciI	CCSGG	1 cut(s)	697
NcoI	CCATGG	2 cut(s)	167, 222
NdeII	GATC	7 cut(s)	57, 99, 151, 397, 505, 974, 1105
NlaIII	CATG	5 cut(s)	56, 117, 171, 226, 1072
NlaIV	GGNNCC	2 cut(s)	625, 1178
NmuCI	GTSAC	1 cut(s)	199
NsiI	ATGCAT	1 cut(s)	1162
PceI	AGGCCT	1 cut(s)	843
PdmI	GAANNNNTTC	2 cut(s)	868, 1004
PfeI	GAWTC	4 cut(s)	49, 110, 664, 1000
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	3 cut(s)	21, 251, 377
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PshBI	ATTAAT	1 cut(s)	1163
Psp6I	CCWGG	2 cut(s)	301, 559
PspFI	CCCAGC	1 cut(s)	135
PspGI	CCWGG	2 cut(s)	301, 559
PspN4I	GGNNCC	2 cut(s)	625, 1178
PspPI	GGNCC	3 cut(s)	73, 530, 986
PsuI	RGATCY	1 cut(s)	1105
PvuII	CAGCTG	1 cut(s)	523
RsaI	GTAC	2 cut(s)	187, 1060
RsaNI	GTAC	2 cut(s)	186, 1059
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	6 cut(s)	350, 581, 750, 1053, 1163, 1170
SatI	GCNGC	3 cut(s)	20, 250, 376
Sau3AI	GATC	7 cut(s)	57, 99, 151, 397, 505, 974, 1105
Sau96I	GGNCC	3 cut(s)	73, 530, 986
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	3 cut(s)	303, 561, 697
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	3 cut(s)	315, 362, 1147
SfcI	CTRYAG	2 cut(s)	42, 1137
SinI	GGWCC	2 cut(s)	73, 530
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
Sse9I	AATT	7 cut(s)	206, 439, 817, 868, 877, 968, 1019
SseBI	AGGCCT	1 cut(s)	843
SsiI	CCGC	1 cut(s)	249
SspMI	CTAG	2 cut(s)	132, 365
StuI	AGGCCT	1 cut(s)	843
StyD4I	CCNGG	3 cut(s)	301, 559, 695
StyI	CCWWGG	2 cut(s)	167, 222
TaaI	ACNGT	3 cut(s)	91, 185, 1058
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	1 cut(s)	267
TasI	AATT	7 cut(s)	206, 439, 817, 868, 877, 968, 1019
TatI	WGTACW	1 cut(s)	185
TauI	GCSGC	1 cut(s)	252
TfiI	GAWTC	4 cut(s)	49, 110, 664, 1000
Tru1I	TTAA	6 cut(s)	350, 581, 750, 1053, 1163, 1170
Tru9I	TTAA	6 cut(s)	350, 581, 750, 1053, 1163, 1170
TscAI	CASTG	2 cut(s)	388, 1068
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	2 cut(s)	19, 375
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	6 cut(s)	41, 102, 285, 656, 825, 881
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	2 cut(s)	388, 1068
VpaK11BI	GGWCC	2 cut(s)	73, 530
VspI	ATTAAT	1 cut(s)	1163
XapI	RAATTY	4 cut(s)	439, 817, 868, 968
XmiI	GTMKAC	2 cut(s)	885, 1087
XmnI	GAANNNNTTC	2 cut(s)	868, 1004
XspI	CTAG	2 cut(s)	132, 365
Zsp2I	ATGCAT	1 cut(s)	1162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.