Rh3CG096500

GTPase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0004586
Physical Location & Seq
Forward (+)
7574487 .. 7578789
4303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG096500.1

Sequence Viewer

Length: 1098 bp
ATGATGATCTTGAGAGATTCATGGAAAAACACACCATCTAGCTGGGAACATTCTGATGATCCCTGTGGTGTGCCATGGGTAGGAGTCAACTGTACTGGTGCAAGGGTGACTGAATTGAGTTTATCAGCCATGGGGCTCATAGGGGAACTTTCCACCGGCTACATTGGGCAACTCGATGAACTAACGTCTTTGGATGTGTCATTCAATCCTGGCATCACAGGTCGTATTTCTCTACAAATATCATTTCTCCTGAAGTTAAATACCCTGAACCTAGCTGGATGCAGCTTCAGTGGTAGTATTCCAGATCAGTTGGGAGATATTGAACAGCTAACCTTCTTGGCTCTGAATTCAAATAACTTATCTGGAACAATACCTTCTGCTTTGGGTCAACTCTCCAATCTCTACTTGCTTGATCTATCAGACAATCAGCTGACTGGACCTCTCCCAATCTCAACCTCTACTTCTCCAGGAGGATTAGACCTCTTGTTAAAGGCTGAACACTTCCATTTGAGCAACAACCAGCTTTCAGGTTCCATTCCACCCGAGCTTTTCAGTTCTGACATGAGACTGATTCATCTGTTCCTTGATGGAAATAAACTTACCGGGGTTATTCCAATGACTTTAGGACTTGTTCAGACTTTTGAGATGGTTCGGCTTAATAGAAATACTCTGACCGGAAGTGTCCCCTCAAACCTAAACAACCTTACAAATGTCAATGAACTGAATTTGGCCAACAACAACTTGACAGGCCTTTTGCCAGACTTGACTGGAATGAATTCCCTCAATTATGTAGACCTTAGTAACAACTCATTTGACCCATCAGTAGCTCCACTTTGGTTCTCAACCTTACCCACACTTACCACTCTGGTTATGGAATTCGGATCACTTCAAGGACCTGTGCCAGAGAAGCTTTTCAGCCTTCCAGAATTACAGCAAGTGACTTTGGTCTGTAAGGCTGTTCTTTGGTGGAAGATATGGGGGTCGAAGATTTGGGATTTGAGAAGGTCCAAGGACCAGTTGGGACTGTCACTGAAGGAGAGAATTCCACCAAGGAAAATGGGAAACTGGAAGAAGGGTCAGGCCATAATGAGCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko04152 ko04921 map03008 map04152 map04921
Pfam Domains
Protein Families
EFG_C EFG_II EFG_IV GTP_EFTU GTP_EFTU_D2

Protein Analysis

365

Amino Acids

39.8

Weight (kDa)

5.14

Isoelectric Point (pI)

28.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 792
AclWI GGATC 2 cut(s) 53, 889
AcoI YGGCCR 1 cut(s) 729
AcsI RAATTY 5 cut(s) 346, 724, 775, 875, 1041
AcuI CTGAAG 3 cut(s) 271, 272, 1052
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 4 cut(s) 205, 323, 351, 890
AjnI CCWGG 2 cut(s) 208, 466
AluBI AGCT 9 cut(s) 42, 275, 285, 328, 430, 523, 547, 827, 910
AluI AGCT 9 cut(s) 42, 275, 285, 328, 430, 523, 547, 827, 910
Alw26I GTCTC 1 cut(s) 559
AlwI GGATC 2 cut(s) 53, 889
Ama87I CYCGRG 1 cut(s) 542
AoxI GGCC 3 cut(s) 729, 748, 1080
ApeKI GCWGC 1 cut(s) 282
ApoI RAATTY 5 cut(s) 346, 724, 775, 875, 1041
ArsI GACNNNNNNTTYG 2 cut(s) 736, 768
Asp700I GAANNNNTTC 2 cut(s) 775, 911
AspS9I GGNCC 4 cut(s) 437, 893, 1005, 1012
AsuC2I CCSGG 1 cut(s) 604
AsuHPI GGTGA 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 542
AvaII GGWCC 4 cut(s) 437, 893, 1005, 1012
BalI TGGCCA 1 cut(s) 731
BanII GRGCYC 2 cut(s) 138, 1094
BbvI GCAGC 1 cut(s) 294
BccI CCATC 4 cut(s) 43, 581, 640, 826
BciT130I CCWGG 2 cut(s) 210, 468
BcnI CCSGG 1 cut(s) 604
BcoDI GTCTC 1 cut(s) 559
BfaI CTAG 2 cut(s) 39, 272
BisI GCNGC 1 cut(s) 283
BlsI GCNGC 1 cut(s) 284
Bme1390I CCNGG 3 cut(s) 210, 468, 604
Bme18I GGWCC 4 cut(s) 437, 893, 1005, 1012
BmeT110I CYCGRG 1 cut(s) 542
BmgT120I GGNCC 4 cut(s) 437, 893, 1005, 1012
BmiI GGNNCC 1 cut(s) 532
BmrFI CCNGG 3 cut(s) 210, 468, 604
BmsI GCATC 2 cut(s) 222, 269
BoxI GACNNNNGTC 1 cut(s) 944
BpmI CTGGAG 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 31
BpuMI CCSGG 1 cut(s) 604
BsaJI CCNNGG 5 cut(s) 74, 129, 603, 1008, 1049
BsaWI WCCGGW 1 cut(s) 674
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 5 cut(s) 100, 439, 772, 1015, 1070
BseBI CCWGG 2 cut(s) 210, 468
BseDI CCNNGG 5 cut(s) 74, 129, 603, 1008, 1049
BseGI GGATG 2 cut(s) 199, 284
BseLI CCNNNNNNNGG 1 cut(s) 80
BseNI ACTGG 5 cut(s) 100, 439, 772, 1015, 1070
BseXI GCAGC 1 cut(s) 294
BseYI CCCAGC 1 cut(s) 42
BshFI GGCC 3 cut(s) 731, 750, 1082
BsiHKCI CYCGRG 1 cut(s) 542
BsiSI CCGG 3 cut(s) 156, 603, 675
BslFI GGGAC 2 cut(s) 668, 1035
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 559
BsmFI GGGAC 2 cut(s) 668, 1035
BsnI GGCC 3 cut(s) 731, 750, 1082
BsoBI CYCGRG 1 cut(s) 542
Bsp1286I GDGCHC 2 cut(s) 138, 1094
Bsp143I GATC 5 cut(s) 6, 58, 304, 412, 881
Bsp19I CCATGG 2 cut(s) 74, 129
BspANI GGCC 3 cut(s) 731, 750, 1082
BspLI GGNNCC 1 cut(s) 532
BspPI GGATC 2 cut(s) 53, 889
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 5 cut(s) 100, 439, 772, 1015, 1070
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 5 cut(s) 74, 129, 603, 1008, 1049
BssMI GATC 5 cut(s) 6, 58, 304, 412, 881
BssT1I CCWWGG 4 cut(s) 74, 129, 1008, 1049
Bst2UI CCWGG 2 cut(s) 210, 468
Bst4CI ACNGT 2 cut(s) 92, 1026
BstDEI CTNAG 1 cut(s) 797
BstDSI CCRYGG 2 cut(s) 74, 129
BstF5I GGATG 2 cut(s) 199, 284
BstKTI GATC 5 cut(s) 9, 61, 307, 415, 884
BstMAI GTCTC 1 cut(s) 559
BstMBI GATC 5 cut(s) 6, 58, 304, 412, 881
BstMWI GCNNNNNNNGC 1 cut(s) 907
BstNI CCWGG 2 cut(s) 210, 468
BstPAI GACNNNNGTC 1 cut(s) 944
BstSCI CCNGG 3 cut(s) 208, 466, 602
BstV1I GCAGC 1 cut(s) 294
BstXI CCANNNNNNTGG 1 cut(s) 42
BsuRI GGCC 3 cut(s) 731, 750, 1082
BtgI CCRYGG 2 cut(s) 74, 129
BtsCI GGATG 2 cut(s) 199, 284
BtsIMutI CAGTG 2 cut(s) 295, 1028
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 4 cut(s) 437, 893, 1005, 1012
Csp6I GTAC 1 cut(s) 93
CviAII CATG 4 cut(s) 21, 75, 130, 562
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 1 cut(s) 797
DpnI GATC 5 cut(s) 8, 60, 306, 414, 883
DpnII GATC 5 cut(s) 6, 58, 304, 412, 881
EaeI YGGCCR 1 cut(s) 729
Eco130I CCWWGG 4 cut(s) 74, 129, 1008, 1049
Eco147I AGGCCT 1 cut(s) 750
Eco24I GRGCYC 2 cut(s) 138, 1094
Eco47I GGWCC 4 cut(s) 437, 893, 1005, 1012
Eco57I CTGAAG 3 cut(s) 271, 272, 1052
Eco88I CYCGRG 1 cut(s) 542
EcoO109I RGGNCCY 1 cut(s) 893
EcoRI GAATTC 4 cut(s) 346, 775, 875, 1041
EcoRII CCWGG 2 cut(s) 208, 466
EcoT14I CCWWGG 4 cut(s) 74, 129, 1008, 1049
EcoT38I GRGCYC 2 cut(s) 138, 1094
ErhI CCWWGG 4 cut(s) 74, 129, 1008, 1049
FaeI CATG 4 cut(s) 24, 78, 133, 565
FaqI GGGAC 2 cut(s) 668, 1035
FatI CATG 4 cut(s) 20, 74, 129, 561
FblI GTMKAC 1 cut(s) 792
Fnu4HI GCNGC 1 cut(s) 283
FokI GGATG 2 cut(s) 206, 291
FriOI GRGCYC 2 cut(s) 138, 1094
Fsp4HI GCNGC 1 cut(s) 283
FspBI CTAG 2 cut(s) 39, 272
GluI GCNGC 1 cut(s) 283
GsaI CCCAGC 1 cut(s) 46
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 3 cut(s) 731, 750, 1082
HapII CCGG 3 cut(s) 156, 603, 675
Hin1II CATG 4 cut(s) 24, 78, 133, 565
HincII GTYRAC 2 cut(s) 88, 389
HindII GTYRAC 2 cut(s) 88, 389
HindIII AAGCTT 1 cut(s) 908
HinfI GANTC 3 cut(s) 17, 84, 571
HpaII CCGG 3 cut(s) 156, 603, 675
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 3 cut(s) 88, 389, 793
Hpy188I TCNGA 7 cut(s) 55, 345, 421, 559, 636, 672, 881
Hpy188III TCNNGA 5 cut(s) 10, 250, 302, 363, 923
Hpy8I GTNNAC 3 cut(s) 88, 389, 793
HpyAV CCTTC 6 cut(s) 343, 384, 929, 996, 1027, 1066
HpyCH4III ACNGT 2 cut(s) 92, 1026
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 2 cut(s) 101, 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 907
HpyF3I CTNAG 1 cut(s) 797
HpySE526I ACGT 1 cut(s) 185
Hsp92II CATG 4 cut(s) 24, 78, 133, 565
Kzo9I GATC 5 cut(s) 6, 58, 304, 412, 881
LmnI GCTCC 1 cut(s) 832
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 2 cut(s) 222, 269
MaeI CTAG 2 cut(s) 39, 272
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 4 cut(s) 106, 800, 937, 1026
MalI GATC 5 cut(s) 8, 60, 306, 414, 883
MboI GATC 5 cut(s) 6, 58, 304, 412, 881
MboII GAAGA 3 cut(s) 982, 997, 1081
MhlI GDGCHC 2 cut(s) 138, 1094
MlsI TGGCCA 1 cut(s) 731
MluCI AATT 8 cut(s) 113, 346, 724, 775, 784, 875, 926, 1041
MluNI TGGCCA 1 cut(s) 731
MlyI GAGTC 1 cut(s) 93
MnlI CCTC 6 cut(s) 450, 464, 466, 491, 697, 791
Mox20I TGGCCA 1 cut(s) 731
MroXI GAANNNNTTC 2 cut(s) 775, 911
MscI TGGCCA 1 cut(s) 731
MseI TTAA 3 cut(s) 257, 488, 657
MslI CAYNNNNRTG 1 cut(s) 54
Msp20I TGGCCA 1 cut(s) 731
MspA1I CMGCKG 1 cut(s) 430
MspI CCGG 3 cut(s) 156, 603, 675
MspR9I CCNGG 3 cut(s) 210, 468, 604
MvaI CCWGG 2 cut(s) 210, 468
MwoI GCNNNNNNNGC 1 cut(s) 907
NciI CCSGG 1 cut(s) 604
NcoI CCATGG 2 cut(s) 74, 129
NdeII GATC 5 cut(s) 6, 58, 304, 412, 881
NlaIII CATG 4 cut(s) 24, 78, 133, 565
NlaIV GGNNCC 1 cut(s) 532
NmuCI GTSAC 3 cut(s) 106, 937, 1026
PceI AGGCCT 1 cut(s) 750
PdmI GAANNNNTTC 2 cut(s) 775, 911
PfeI GAWTC 2 cut(s) 17, 571
PfoI TCCNGGA 1 cut(s) 466
PkrI GCNGC 1 cut(s) 284
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PpuMI RGGWCCY 1 cut(s) 893
PshAI GACNNNNGTC 1 cut(s) 944
Psp5II RGGWCCY 1 cut(s) 893
Psp6I CCWGG 2 cut(s) 208, 466
PspFI CCCAGC 1 cut(s) 42
PspGI CCWGG 2 cut(s) 208, 466
PspN4I GGNNCC 1 cut(s) 532
PspPI GGNCC 4 cut(s) 437, 893, 1005, 1012
PspPPI RGGWCCY 1 cut(s) 893
PvuII CAGCTG 1 cut(s) 430
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
RseI CAYNNNNRTG 1 cut(s) 54
SaqAI TTAA 3 cut(s) 257, 488, 657
SatI GCNGC 1 cut(s) 283
Sau3AI GATC 5 cut(s) 6, 58, 304, 412, 881
Sau96I GGNCC 4 cut(s) 437, 893, 1005, 1012
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 3 cut(s) 210, 468, 604
SduI GDGCHC 2 cut(s) 138, 1094
SfaNI GCATC 2 cut(s) 222, 269
SinI GGWCC 4 cut(s) 437, 893, 1005, 1012
SmiMI CAYNNNNRTG 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 8 cut(s) 113, 346, 724, 775, 784, 875, 926, 1041
SseBI AGGCCT 1 cut(s) 750
SspMI CTAG 2 cut(s) 39, 272
StuI AGGCCT 1 cut(s) 750
StyD4I CCNGG 3 cut(s) 208, 466, 602
StyI CCWWGG 4 cut(s) 74, 129, 1008, 1049
TaaI ACNGT 2 cut(s) 92, 1026
TaiI ACGT 1 cut(s) 188
TaqI TCGA 2 cut(s) 174, 983
TasI AATT 8 cut(s) 113, 346, 724, 775, 784, 875, 926, 1041
TatI WGTACW 1 cut(s) 92
TfiI GAWTC 2 cut(s) 17, 571
Tru1I TTAA 3 cut(s) 257, 488, 657
Tru9I TTAA 3 cut(s) 257, 488, 657
TscAI CASTG 2 cut(s) 295, 1035
TseFI GTSAC 3 cut(s) 106, 937, 1026
TseI GCWGC 1 cut(s) 282
Tsp45I GTSAC 3 cut(s) 106, 937, 1026
TspDTI ATGAA 5 cut(s) 9, 192, 563, 732, 788
TspRI CASTG 2 cut(s) 295, 1035
VpaK11BI GGWCC 4 cut(s) 437, 893, 1005, 1012
XapI RAATTY 5 cut(s) 346, 724, 775, 875, 1041
XcmI CCANNNNNNNNNTGG 2 cut(s) 868, 1015
XmiI GTMKAC 1 cut(s) 792
XmnI GAANNNNTTC 2 cut(s) 775, 911
XspI CTAG 2 cut(s) 39, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.