Rmu_sc0035588.1_g000001
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035588.1
OG0004586
Physical Location & Seq
Forward (+)
1 .. 1645
1645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035588.1_g000001.1.cds

Sequence Viewer

Length: 793 bp
ggctctaaattcaaataacttatctggaacaataccttctgctttgggtcaactctccaacctctacttgcttgatctatcagacaatcagctgactggacctctcccaatctcaacctctacttctccaggaggattagacctcttgttaaaggctgaacacttccatttgagcaacaaccagctttcaggttccattccacccgagcttttcagttctgaaatgagactgattcatctgttccttgatggaaataaacttaccggggttattccaatgactttaggacttgttcagacttttgagatggttcggcttaatagaaatactctgaccggaagtgtcccctcaaacctaaacaaccttacaaatgtcaatgaactgaatttggccaacaacaacttgacaggccttttgccagacttgactggaatgaattccctcaattatgtagaccttagtaacaactcatttgacccatcagtagctccactttggttctcaaccttacccacacttactactctggttatggaattcggatcacttcaagggcctgtgccagagaatcttttcagccttccagaattacaggaagtgaaactgaaatacaatacatttaacggtacactgaacatgggtgataacatcagtctacaactggagcttgtggatctccagaacaatcagatttcccatctcactatagaagaagaatacaaggatgcattaatacttaaagggaacccgatatgttccggtagtctatcaaacactacttggtgtcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 Pkinase_Tyr

Protein Analysis

263

Amino Acids

28.61

Weight (kDa)

4.4

Isoelectric Point (pI)

28.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 454, 656
AclWI GGATC 2 cut(s) 551, 682
AcoI YGGCCR 1 cut(s) 391
AcsI RAATTY 4 cut(s) 8, 386, 437, 537
AfaI GTAC 1 cut(s) 629
AgsI TTSAA 2 cut(s) 13, 552
AjnI CCWGG 1 cut(s) 128
AluBI AGCT 5 cut(s) 92, 185, 209, 489, 668
AluI AGCT 5 cut(s) 92, 185, 209, 489, 668
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 2 cut(s) 551, 682
Ama87I CYCGRG 1 cut(s) 204
AoxI GGCC 3 cut(s) 391, 410, 555
ApoI RAATTY 4 cut(s) 8, 386, 437, 537
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
AseI ATTAAT 1 cut(s) 732
Asp700I GAANNNNTTC 2 cut(s) 437, 573
AspS9I GGNCC 2 cut(s) 99, 555
AsuC2I CCSGG 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 654
AvaI CYCGRG 1 cut(s) 204
AvaII GGWCC 1 cut(s) 99
BalI TGGCCA 1 cut(s) 393
BccI CCATC 4 cut(s) 243, 302, 488, 706
BciT130I CCWGG 1 cut(s) 130
BcnI CCSGG 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 706
Bme1390I CCNGG 2 cut(s) 130, 266
Bme18I GGWCC 1 cut(s) 99
BmeT110I CYCGRG 1 cut(s) 204
BmgT120I GGNCC 2 cut(s) 99, 555
BmiI GGNNCC 2 cut(s) 194, 747
BmrFI CCNGG 2 cut(s) 130, 266
BmsI GCATC 1 cut(s) 716
BpmI CTGGAG 3 cut(s) 112, 663, 684
BpuMI CCSGG 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 265
BsaWI WCCGGW 2 cut(s) 336, 759
Bse1I ACTGG 3 cut(s) 101, 434, 667
BseBI CCWGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 731
BseNI ACTGG 3 cut(s) 101, 434, 667
BshFI GGCC 3 cut(s) 393, 412, 557
BsiHKCI CYCGRG 1 cut(s) 204
BsiSI CCGG 3 cut(s) 265, 337, 760
BslFI GGGAC 1 cut(s) 330
BsmAI GTCTC 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 3 cut(s) 393, 412, 557
BsoBI CYCGRG 1 cut(s) 204
Bsp143I GATC 3 cut(s) 74, 543, 674
BspANI GGCC 3 cut(s) 393, 412, 557
BspLI GGNNCC 2 cut(s) 194, 747
BspPI GGATC 2 cut(s) 551, 682
BsrI ACTGG 3 cut(s) 101, 434, 667
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 3 cut(s) 74, 543, 674
Bst2UI CCWGG 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 627
BstDEI CTNAG 1 cut(s) 459
BstF5I GGATG 1 cut(s) 731
BstKTI GATC 3 cut(s) 77, 546, 677
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 3 cut(s) 74, 543, 674
BstNI CCWGG 1 cut(s) 130
BstSCI CCNGG 2 cut(s) 128, 264
BstSFI CTRYAG 1 cut(s) 706
BstX2I RGATCY 1 cut(s) 674
BstYI RGATCY 1 cut(s) 674
BsuRI GGCC 3 cut(s) 393, 412, 557
BtsCI GGATG 1 cut(s) 731
BtsIMutI CAGTG 1 cut(s) 630
Cfr13I GGNCC 2 cut(s) 99, 555
Csp6I GTAC 1 cut(s) 628
CviAII CATG 1 cut(s) 638
CviQI GTAC 1 cut(s) 628
DdeI CTNAG 1 cut(s) 459
DpnI GATC 3 cut(s) 76, 545, 676
DpnII GATC 3 cut(s) 74, 543, 674
EaeI YGGCCR 1 cut(s) 391
Eco147I AGGCCT 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 555
EcoRI GAATTC 2 cut(s) 437, 537
EcoRII CCWGG 1 cut(s) 128
EcoT22I ATGCAT 1 cut(s) 731
FaeI CATG 1 cut(s) 641
FaiI YATR 5 cut(s) 451, 534, 639, 708, 755
FaqI GGGAC 1 cut(s) 330
FatI CATG 1 cut(s) 637
FblI GTMKAC 2 cut(s) 454, 656
FokI GGATG 1 cut(s) 738
GsuI CTGGAG 3 cut(s) 112, 663, 684
HaeIII GGCC 3 cut(s) 393, 412, 557
HapII CCGG 3 cut(s) 265, 337, 760
Hin1II CATG 1 cut(s) 641
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 2 cut(s) 233, 569
HpaII CCGG 3 cut(s) 265, 337, 760
HphI GGTGA 1 cut(s) 654
Hpy166II GTNNAC 4 cut(s) 51, 455, 630, 657
Hpy188I TCNGA 6 cut(s) 83, 221, 298, 334, 543, 691
Hpy188III TCNNGA 3 cut(s) 25, 585, 680
Hpy8I GTNNAC 4 cut(s) 51, 455, 630, 657
HpyAV CCTTC 2 cut(s) 46, 591
HpyCH4III ACNGT 1 cut(s) 627
HpyCH4V TGCA 1 cut(s) 729
HpyF3I CTNAG 1 cut(s) 459
Hsp92II CATG 1 cut(s) 641
Kzo9I GATC 3 cut(s) 74, 543, 674
LmnI GCTCC 2 cut(s) 494, 665
LweI GCATC 1 cut(s) 716
MaeIII GTNAC 1 cut(s) 462
MalI GATC 3 cut(s) 76, 545, 676
MboI GATC 3 cut(s) 74, 543, 674
MboII GAAGA 2 cut(s) 723, 726
MflI RGATCY 1 cut(s) 674
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 6 cut(s) 8, 386, 437, 446, 537, 588
MluNI TGGCCA 1 cut(s) 393
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 7 cut(s) 72, 112, 126, 128, 153, 359, 453
Mox20I TGGCCA 1 cut(s) 393
Mph1103I ATGCAT 1 cut(s) 731
MroXI GAANNNNTTC 2 cut(s) 437, 573
MscI TGGCCA 1 cut(s) 393
MseI TTAA 5 cut(s) 150, 319, 622, 732, 739
Msp20I TGGCCA 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 3 cut(s) 265, 337, 760
MspR9I CCNGG 2 cut(s) 130, 266
MvaI CCWGG 1 cut(s) 130
NciI CCSGG 1 cut(s) 266
NdeII GATC 3 cut(s) 74, 543, 674
NlaIII CATG 1 cut(s) 641
NlaIV GGNNCC 2 cut(s) 194, 747
NsiI ATGCAT 1 cut(s) 731
PceI AGGCCT 1 cut(s) 412
PdmI GAANNNNTTC 2 cut(s) 437, 573
PfeI GAWTC 2 cut(s) 233, 569
PfoI TCCNGGA 1 cut(s) 128
PshBI ATTAAT 1 cut(s) 732
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 194, 747
PspPI GGNCC 2 cut(s) 99, 555
PsuI RGATCY 1 cut(s) 674
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 1 cut(s) 629
RsaNI GTAC 1 cut(s) 628
SaqAI TTAA 5 cut(s) 150, 319, 622, 732, 739
Sau3AI GATC 3 cut(s) 74, 543, 674
Sau96I GGNCC 2 cut(s) 99, 555
ScrFI CCNGG 2 cut(s) 130, 266
SfaNI GCATC 1 cut(s) 716
SfcI CTRYAG 1 cut(s) 706
SinI GGWCC 1 cut(s) 99
Sse9I AATT 6 cut(s) 8, 386, 437, 446, 537, 588
SseBI AGGCCT 1 cut(s) 412
StuI AGGCCT 1 cut(s) 412
StyD4I CCNGG 2 cut(s) 128, 264
TaaI ACNGT 1 cut(s) 627
TasI AATT 6 cut(s) 8, 386, 437, 446, 537, 588
TfiI GAWTC 2 cut(s) 233, 569
Tru1I TTAA 5 cut(s) 150, 319, 622, 732, 739
Tru9I TTAA 5 cut(s) 150, 319, 622, 732, 739
TscAI CASTG 1 cut(s) 637
TspDTI ATGAA 3 cut(s) 225, 394, 450
TspRI CASTG 1 cut(s) 637
VpaK11BI GGWCC 1 cut(s) 99
VspI ATTAAT 1 cut(s) 732
XapI RAATTY 4 cut(s) 8, 386, 437, 537
XmiI GTMKAC 2 cut(s) 454, 656
XmnI GAANNNNTTC 2 cut(s) 437, 573
Zsp2I ATGCAT 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.