Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004586

Physical Location & Seq

Genomic Coordinates Reverse (-)

41631265 .. 41633343

Gene Structure 2079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00420360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAGGTTGCTGCTCTTTTTTGCTCTATATTCTGCAGGCATTCATGTGATCTCCTCGCTTACGGACCCCAATGACGCTTCTGTGCTCCATACCTTGAAAGTGTCCTGGAAAAACACGCCACCGAGCTGGGATAATTCTTCTGATCCCTGTGGTTTTCCATGGGAAGGAGTCAGCTGCAGCGGTGCAAGGGTGACTGCATTGGGATTATCAACCATGGGCCTCATAGGGGAACTCAGTAGCTACATTGAGGGACTCACTGAACTAAACTCCTTGGACCTGTCATTCAACCCTGGACTCCAAGGTCCTCTTCCTCCACAGTTAGGGGATCTCCTAAAGTTAAATATCCTGATCCTAGCTGGCTGCAGCTTCAGTGGCAACATTCCAAATGAGTTGGGAAATCTTGAACAGCTTGCGTTCTTGGCTCTGAATACAAATTACTTCACTGGTAGCATACCTCCTTCTTTAGGTAAGCTCTCCAACCTCTACTGGCTTGATGTGGCAGACAATCAATTGAGCGGACCTCTACCAATTTCGACGTCCACTTCTCCAGGCTTAGACCTCTTGTTAAACGCTAAACATTTCCATTTGAACAAGAACCAGCTTTCAGGTTCCATTCCACTCGAGCTTTTCAGCTCCGAGATGATATTGATACACGCTCGGCTTAATAGAAATGCTCTGACCGGAAGTGTCCCCTCAAACCTTAACAACCTTACAAATGTCAATGAACTAAATTTGGCCAACAACAAATTGGCAGGCCCCTTGCCTGACTTGACTGGAATGAATTCTCTCAATTATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase_Tyr

Protein Analysis

266

Amino Acids

28.45

Weight (kDa)

4.93

Isoelectric Point (pI)

28.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49750
fragaria_vesca	FvH4_6g08970 FvH4_6g09001
prunus_persica	Prupe.6G301700_v2.0.a1
rosa_laevigata	RLG00000025099
rosa_multiflora	Rmu_co8402051.1_g000001 Rmu_sc0002435.1_g000001 Rmu_sc0010702.1_g000004 Rmu_sc0022643.1_g000002 Rmu_sc0035588.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241190 Rroxscaffold_6G00420360 Rroxscaffold_6G00420370
rosa_rugosa	Rorug03G0034500 Rorug03G0034500 Rorug03G0034600 Rorug03G0034700 Rorug03G0034800
rosa_samantha	Rh2AG320500 Rh3AG092500 Rh3AG092600 Rh3BG095700 Rh3CG096500 Rh3CG096700 Rh3DG096200 Rh3DG096300 Rh4AG031900
rosa_wichuraiana	Rw3G007950 Rw3G007960 Rw6G021920 Rw7G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	300
AatII	GACGTC	1 cut(s)	539
AccBSI	CCGCTC	1 cut(s)	516
AciI	CCGC	2 cut(s)	180, 516
AclWI	GGATC	3 cut(s)	137, 333, 343
AcoI	YGGCCR	1 cut(s)	735
AcsI	RAATTY	2 cut(s)	730, 781
AcuI	CTGAAG	1 cut(s)	352
AcyI	GRCGYC	1 cut(s)	536
AfiI	CCNNNNNNNGG	4 cut(s)	164, 226, 320, 464
AgsI	TTSAA	4 cut(s)	97, 286, 404, 589
AjnI	CCWGG	3 cut(s)	104, 289, 547
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
Alw21I	GWGCWC	1 cut(s)	87
AlwI	GGATC	3 cut(s)	137, 333, 343
Ama87I	CYCGRG	1 cut(s)	620
AoxI	GGCC	3 cut(s)	217, 735, 754
ApeKI	GCWGC	5 cut(s)	10, 174, 177, 360, 363
ApoI	RAATTY	2 cut(s)	730, 781
Asp700I	GAANNNNTTC	1 cut(s)	781
AspS9I	GGNCC	6 cut(s)	64, 217, 274, 302, 518, 755
AsuHPI	GGTGA	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	620
AvaII	GGWCC	4 cut(s)	64, 274, 302, 518
BalI	TGGCCA	1 cut(s)	737
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	4 cut(s)	161, 189, 347, 375
BciT130I	CCWGG	3 cut(s)	106, 291, 549
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	3 cut(s)	33, 175, 361
BisI	GCNGC	5 cut(s)	11, 175, 178, 361, 364
BlsI	GCNGC	5 cut(s)	12, 176, 179, 362, 365
Bme1390I	CCNGG	3 cut(s)	106, 291, 549
Bme18I	GGWCC	4 cut(s)	64, 274, 302, 518
BmeT110I	CYCGRG	1 cut(s)	620
BmgT120I	GGNCC	6 cut(s)	64, 217, 274, 302, 518, 755
BmiI	GGNNCC	3 cut(s)	66, 610, 757
BmrFI	CCNGG	3 cut(s)	106, 291, 549
BplI	GAGNNNNNCTC	2 cut(s)	505, 537
BpmI	CTGGAG	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	536
BsaJI	CCNNGG	5 cut(s)	158, 213, 270, 289, 298
BsaWI	WCCGGW	1 cut(s)	680
Bsc4I	CCNNNNNNNGG	4 cut(s)	164, 226, 320, 464
Bse1I	ACTGG	3 cut(s)	448, 491, 778
BseBI	CCWGG	3 cut(s)	106, 291, 549
BseDI	CCNNGG	5 cut(s)	158, 213, 270, 289, 298
BseLI	CCNNNNNNNGG	4 cut(s)	164, 226, 320, 464
BseMII	CTCAG	1 cut(s)	247
BseNI	ACTGG	3 cut(s)	448, 491, 778
BseRI	GAGGAG	1 cut(s)	43
BseXI	GCAGC	4 cut(s)	161, 189, 347, 375
BseYI	CCCAGC	1 cut(s)	126
BshFI	GGCC	3 cut(s)	219, 737, 756
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	620
BsiSI	CCGG	1 cut(s)	681
BslFI	GGGAC	2 cut(s)	264, 674
BslI	CCNNNNNNNGG	4 cut(s)	164, 226, 320, 464
BsmFI	GGGAC	2 cut(s)	264, 674
BsmI	GAATGC	1 cut(s)	39
BsnI	GGCC	3 cut(s)	219, 737, 756
BsoBI	CYCGRG	1 cut(s)	620
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	4 cut(s)	48, 142, 325, 348
Bsp19I	CCATGG	2 cut(s)	158, 213
BspACI	CCGC	2 cut(s)	180, 516
BspANI	GGCC	3 cut(s)	219, 737, 756
BspCNI	CTCAG	1 cut(s)	246
BspLI	GGNNCC	3 cut(s)	66, 610, 757
BspMAI	CTGCAG	3 cut(s)	37, 179, 365
BspPI	GGATC	5 cut(s)	137, 333, 343, 913, 1279
BsrBI	CCGCTC	1 cut(s)	516
BsrI	ACTGG	3 cut(s)	448, 491, 778
BssECI	CCNNGG	5 cut(s)	158, 213, 270, 289, 298
BssMI	GATC	4 cut(s)	48, 142, 325, 348
BssNI	GRCGYC	1 cut(s)	536
BssT1I	CCWWGG	4 cut(s)	158, 213, 270, 298
Bst2UI	CCWGG	3 cut(s)	106, 291, 549
Bst4CI	ACNGT	1 cut(s)	318
Bst6I	CTCTTC	1 cut(s)	312
BstACI	GRCGYC	1 cut(s)	536
BstC8I	GCNNGC	4 cut(s)	37, 358, 411, 754
BstDEI	CTNAG	2 cut(s)	233, 553
BstDSI	CCRYGG	2 cut(s)	158, 213
BstENI	CCTNNNNNAGG	1 cut(s)	462
BstKTI	GATC	4 cut(s)	51, 145, 328, 351
BstMBI	GATC	4 cut(s)	48, 142, 325, 348
BstMWI	GCNNNNNNNGC	2 cut(s)	372, 419
BstNI	CCWGG	3 cut(s)	106, 291, 549
BstSCI	CCNGG	3 cut(s)	104, 289, 547
BstSFI	CTRYAG	3 cut(s)	33, 175, 361
BstV1I	GCAGC	4 cut(s)	161, 189, 347, 375
BstX2I	RGATCY	1 cut(s)	325
BstXI	CCANNNNNNTGG	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	3 cut(s)	219, 737, 756
BtgI	CCRYGG	2 cut(s)	158, 213
BtsIMutI	CAGTG	3 cut(s)	255, 376, 441
Cac8I	GCNNGC	4 cut(s)	37, 358, 411, 754
Cfr13I	GGNCC	6 cut(s)	64, 217, 274, 302, 518, 755
CseI	GACGC	1 cut(s)	83
CviAII	CATG	3 cut(s)	44, 159, 214
DdeI	CTNAG	2 cut(s)	233, 553
DpnI	GATC	4 cut(s)	50, 144, 327, 350
DpnII	GATC	4 cut(s)	48, 142, 325, 348
DrdI	GACNNNNNNGTC	1 cut(s)	300
DseDI	GACNNNNNNGTC	1 cut(s)	300
EaeI	YGGCCR	1 cut(s)	735
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Eco130I	CCWWGG	4 cut(s)	158, 213, 270, 298
Eco47I	GGWCC	4 cut(s)	64, 274, 302, 518
Eco57I	CTGAAG	1 cut(s)	352
Eco88I	CYCGRG	1 cut(s)	620
EcoNI	CCTNNNNNAGG	1 cut(s)	462
EcoO109I	RGGNCCY	2 cut(s)	302, 755
EcoRI	GAATTC	1 cut(s)	781
EcoRII	CCWGG	3 cut(s)	104, 289, 547
EcoT14I	CCWWGG	4 cut(s)	158, 213, 270, 298
ErhI	CCWWGG	4 cut(s)	158, 213, 270, 298
FaeI	CATG	3 cut(s)	47, 162, 217
FaiI	YATR	8 cut(s)	28, 45, 90, 160, 215, 224, 452, 795
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FaqI	GGGAC	2 cut(s)	264, 674
FatI	CATG	3 cut(s)	43, 158, 213
Fnu4HI	GCNGC	5 cut(s)	11, 175, 178, 361, 364
Fsp4HI	GCNGC	5 cut(s)	11, 175, 178, 361, 364
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	5 cut(s)	11, 175, 178, 361, 364
GsaI	CCCAGC	1 cut(s)	130
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	3 cut(s)	219, 737, 756
HapII	CCGG	1 cut(s)	681
HgaI	GACGC	1 cut(s)	83
Hin1I	GRCGYC	1 cut(s)	536
Hin1II	CATG	3 cut(s)	47, 162, 217
HinfI	GANTC	3 cut(s)	168, 252, 294
HpaII	CCGG	1 cut(s)	681
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188I	TCNGA	4 cut(s)	142, 426, 637, 678
Hpy188III	TCNNGA	2 cut(s)	346, 401
Hpy8I	GTNNAC	1 cut(s)	540
Hpy99I	CGWCG	1 cut(s)	538
HpyAV	CCTTC	2 cut(s)	158, 468
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4IV	ACGT	1 cut(s)	536
HpyCH4V	TGCA	5 cut(s)	35, 177, 185, 197, 363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	372, 419
HpyF3I	CTNAG	2 cut(s)	233, 553
HpySE526I	ACGT	1 cut(s)	536
Hsp92I	GRCGYC	1 cut(s)	536
Hsp92II	CATG	3 cut(s)	47, 162, 217
Kzo9I	GATC	4 cut(s)	48, 142, 325, 348
LmnI	GCTCC	2 cut(s)	90, 638
Lsp1109I	GCAGC	4 cut(s)	161, 189, 347, 375
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	1 cut(s)	536
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	4 cut(s)	50, 144, 327, 350
MbiI	CCGCTC	1 cut(s)	516
MboI	GATC	4 cut(s)	48, 142, 325, 348
MboII	GAAGA	2 cut(s)	129, 299
MfeI	CAATTG	1 cut(s)	509
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	87
MlsI	TGGCCA	1 cut(s)	737
MluCI	AATT	8 cut(s)	133, 433, 509, 528, 730, 746, 781, 790
MluNI	TGGCCA	1 cut(s)	737
MlyI	GAGTC	3 cut(s)	177, 246, 288
MmeI	TCCRAC	1 cut(s)	501
Mox20I	TGGCCA	1 cut(s)	737
MroXI	GAANNNNTTC	1 cut(s)	781
MscI	TGGCCA	1 cut(s)	737
MseI	TTAA	4 cut(s)	338, 566, 663, 702
MslI	CAYNNNNRTG	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	737
MspA1I	CMGCKG	2 cut(s)	174, 180
MspI	CCGG	1 cut(s)	681
MspR9I	CCNGG	3 cut(s)	106, 291, 549
MunI	CAATTG	1 cut(s)	509
Mva1269I	GAATGC	1 cut(s)	39
MvaI	CCWGG	3 cut(s)	106, 291, 549
MwoI	GCNNNNNNNGC	2 cut(s)	372, 419
NcoI	CCATGG	2 cut(s)	158, 213
NdeII	GATC	4 cut(s)	48, 142, 325, 348
NlaIII	CATG	3 cut(s)	47, 162, 217
NlaIV	GGNNCC	3 cut(s)	66, 610, 757
NmeAIII	GCCGAG	1 cut(s)	637
NmuCI	GTSAC	1 cut(s)	190
PaeR7I	CTCGAG	1 cut(s)	620
PctI	GAATGC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	781
PfoI	TCCNGGA	1 cut(s)	104
PkrI	GCNGC	5 cut(s)	12, 176, 179, 362, 365
PleI	GAGTC	3 cut(s)	176, 246, 288
PpsI	GAGTC	3 cut(s)	176, 246, 288
PpuMI	RGGWCCY	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	302
Psp6I	CCWGG	3 cut(s)	104, 289, 547
PspFI	CCCAGC	1 cut(s)	126
PspGI	CCWGG	3 cut(s)	104, 289, 547
PspN4I	GGNNCC	3 cut(s)	66, 610, 757
PspPI	GGNCC	6 cut(s)	64, 217, 274, 302, 518, 755
PspPPI	RGGWCCY	1 cut(s)	302
PspXI	VCTCGAGB	1 cut(s)	620
PstI	CTGCAG	3 cut(s)	37, 179, 365
PsuI	RGATCY	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	174
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	4 cut(s)	338, 566, 663, 702
SatI	GCNGC	5 cut(s)	11, 175, 178, 361, 364
Sau3AI	GATC	4 cut(s)	48, 142, 325, 348
Sau96I	GGNCC	6 cut(s)	64, 217, 274, 302, 518, 755
SchI	GAGTC	3 cut(s)	177, 246, 288
ScrFI	CCNGG	3 cut(s)	106, 291, 549
SduI	GDGCHC	1 cut(s)	87
SfcI	CTRYAG	3 cut(s)	33, 175, 361
Sfr274I	CTCGAG	1 cut(s)	620
SinI	GGWCC	4 cut(s)	64, 274, 302, 518
SlaI	CTCGAG	1 cut(s)	620
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
Sse9I	AATT	8 cut(s)	133, 433, 509, 528, 730, 746, 781, 790
SsiI	CCGC	2 cut(s)	180, 516
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	3 cut(s)	104, 289, 547
StyI	CCWWGG	4 cut(s)	158, 213, 270, 298
TaaI	ACNGT	1 cut(s)	318
TaiI	ACGT	1 cut(s)	539
TaqI	TCGA	2 cut(s)	533, 621
TasI	AATT	8 cut(s)	133, 433, 509, 528, 730, 746, 781, 790
Tru1I	TTAA	4 cut(s)	338, 566, 663, 702
Tru9I	TTAA	4 cut(s)	338, 566, 663, 702
TscAI	CASTG	3 cut(s)	262, 376, 448
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	5 cut(s)	10, 174, 177, 360, 363
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	3 cut(s)	32, 738, 794
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	3 cut(s)	262, 376, 448
VpaK11BI	GGWCC	4 cut(s)	64, 274, 302, 518
XagI	CCTNNNNNAGG	1 cut(s)	462
XapI	RAATTY	2 cut(s)	730, 781
XcmI	CCANNNNNNNNNTGG	1 cut(s)	745
XhoI	CTCGAG	1 cut(s)	620
XmnI	GAANNNNTTC	1 cut(s)	781
XspI	CTAG	1 cut(s)	353
ZraI	GACGTC	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.