Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004586

Physical Location & Seq

Genomic Coordinates Forward (+)

2778043 .. 2782427

Gene Structure 4385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0034700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGTGAGCAAAACGGAGGAGGCGCAATTGAACAGGCTCGAGAGCCAGGTCGATAATGGAGGAGGAGGAGCGTGGGAGTACCTCTGCCTGGTCCGAAAGCTCAAGGTGCGGCGTTCCGAGAAGGTTTTGAAGTACGGCATGTCGATCTTGAACGACCTCAGTAAACGATCCAGTCTTGGACCGGAAGAATGGACTCTATACGAGCAGGTTGCACTTGCAGCCATGGACTGCCAGTGTCTTGATGTTGCAAAGGACCTCATCAAGCTTTTACGAAAGGCATTTCCCGAGAGTAAAAGAGTTGGCAAGCTAGAGGCTATGTTGCTTGAGGCAAAGGGATCCTGGTCAGAGGCAGAGAAGGCTTATTCAAGCCTTTTGGAAGATAGTCCACTTGATCAAGTAATACATAAGAGAAGGGTAGCTATGGCAAAGGCTCAAGGCGATACTTCAGGGGCCATTGAATGGCTTAATAAATATCTTGAAATATTTATGGCCGATAATGATGCTTGGAGAGAGCTGGCAGAAATCTATGTCTCGTTGCAAATGTACAAGCAAGCTGCCTTCTGCTATGAGGAGCTGATATTAGCACAACCTACTGTTCCCCTCTACCACTTAGCTTATGCTGATATTCTTTACACTCTTGGTGGATTAGAAAACATACAGACAGCAAAGAAATACTACGCATCTGTTATAGACTTGACTGGGGGCAAGAATATCAGGGCATTATTTGGTATTAGCTTGTGTACTTCTGCCATTGCACAGCTTGCAAAAGGAAGGAACAAGGAAGACAAGGAGACCTCGGAGCTACAGTCACTGGTAGCAACAGCCTTGGAGAAAGACTACAAGCAAAGAGCTCCGGACAAGCTTTCTCTGCTTACTACTGCCTTAAAAAACTTGAAAGTTTCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase_Tyr

Protein Analysis

302

Amino Acids

33.79

Weight (kDa)

7.53

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_EMC2	PF22890	99 - 209	6.4e-57	EMC2 TPR-like repeat domain
TPR_19	PF14559	144 - 209	6.8e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49750
fragaria_vesca	FvH4_6g08970 FvH4_6g09001
prunus_persica	Prupe.6G301700_v2.0.a1
rosa_laevigata	RLG00000025099
rosa_multiflora	Rmu_co8402051.1_g000001 Rmu_sc0002435.1_g000001 Rmu_sc0010702.1_g000004 Rmu_sc0022643.1_g000002 Rmu_sc0035588.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241190 Rroxscaffold_6G00420360 Rroxscaffold_6G00420370
rosa_rugosa	Rorug03G0034500 Rorug03G0034500 Rorug03G0034600 Rorug03G0034700 Rorug03G0034800
rosa_samantha	Rh2AG320500 Rh3AG092500 Rh3AG092600 Rh3BG095700 Rh3CG096500 Rh3CG096700 Rh3DG096200 Rh3DG096300 Rh4AG031900
rosa_wichuraiana	Rw3G007950 Rw3G007960 Rw6G021920 Rw7G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AccB7I	CCANNNNNTGG	1 cut(s)	459
AccIII	TCCGGA	1 cut(s)	853
AciI	CCGC	1 cut(s)	109
AclWI	GGATC	3 cut(s)	162, 330, 343
AcoI	YGGCCR	1 cut(s)	489
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	4 cut(s)	80, 134, 545, 742
AfiI	CCNNNNNNNGG	2 cut(s)	88, 459
AgsI	TTSAA	7 cut(s)	31, 130, 151, 366, 458, 479, 895
AjnI	CCWGG	3 cut(s)	45, 87, 338
Alw21I	GWGCWC	1 cut(s)	853
Alw26I	GTCTC	2 cut(s)	535, 785
AlwI	GGATC	3 cut(s)	162, 330, 343
AlwNI	CAGNNNCTG	1 cut(s)	811
Ama87I	CYCGRG	2 cut(s)	38, 284
Aor13HI	TCCGGA	1 cut(s)	853
AoxI	GGCC	2 cut(s)	450, 489
ApeKI	GCWGC	2 cut(s)	218, 554
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	4 cut(s)	91, 179, 253, 450
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	2 cut(s)	38, 284
AvaII	GGWCC	3 cut(s)	91, 179, 253
BamHI	GGATCC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	853
BbsI	GAAGAC	1 cut(s)	789
Bbv12I	GWGCWC	1 cut(s)	853
BbvI	GCAGC	2 cut(s)	230, 541
BceAI	ACGGC	1 cut(s)	151
BcgI	CGANNNNNNTGC	4 cut(s)	191, 225, 482, 516
BciT130I	CCWGG	3 cut(s)	47, 89, 340
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	2 cut(s)	535, 785
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	803
BfuAI	ACCTGC	1 cut(s)	196
BisI	GCNGC	3 cut(s)	110, 219, 555
BlsI	GCNGC	3 cut(s)	111, 220, 556
Bme1390I	CCNGG	3 cut(s)	47, 89, 340
Bme18I	GGWCC	3 cut(s)	91, 179, 253
BmeT110I	CYCGRG	2 cut(s)	38, 284
BmgT120I	GGNCC	4 cut(s)	91, 179, 253, 450
BmiI	GGNNCC	2 cut(s)	337, 451
BmrFI	CCNGG	3 cut(s)	47, 89, 340
BmrI	ACTGGG	1 cut(s)	708
BmsI	GCATC	2 cut(s)	490, 689
BmuI	ACTGGG	1 cut(s)	708
BpiI	GAAGAC	1 cut(s)	789
BpuEI	CTTGAG	3 cut(s)	86, 344, 417
BsaI	GGTCTC	1 cut(s)	785
BsaJI	CCNNGG	3 cut(s)	222, 795, 825
BsaWI	WCCGGW	2 cut(s)	181, 853
BsaXI	ACNNNNNCTCC	2 cut(s)	791, 821
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 459
Bse1I	ACTGG	4 cut(s)	171, 232, 703, 816
Bse3DI	GCAATG	1 cut(s)	750
BseAI	TCCGGA	1 cut(s)	853
BseBI	CCWGG	3 cut(s)	47, 89, 340
BseDI	CCNNGG	3 cut(s)	222, 795, 825
BseLI	CCNNNNNNNGG	2 cut(s)	88, 459
BseMI	GCAATG	1 cut(s)	750
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	4 cut(s)	171, 232, 703, 816
BseRI	GAGGAG	5 cut(s)	32, 75, 78, 81, 584
BseXI	GCAGC	2 cut(s)	230, 541
BshFI	GGCC	2 cut(s)	452, 491
BsiHKAI	GWGCWC	1 cut(s)	853
BsiHKCI	CYCGRG	2 cut(s)	38, 284
BsiSI	CCGG	2 cut(s)	182, 854
BslI	CCNNNNNNNGG	2 cut(s)	88, 459
BsmAI	GTCTC	2 cut(s)	535, 785
BsnI	GGCC	2 cut(s)	452, 491
Bso31I	GGTCTC	1 cut(s)	785
BsoBI	CYCGRG	2 cut(s)	38, 284
Bsp1286I	GDGCHC	1 cut(s)	853
Bsp13I	TCCGGA	1 cut(s)	853
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	4 cut(s)	144, 167, 335, 391
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	2 cut(s)	452, 491
BspCNI	CTCAG	1 cut(s)	171
BspEI	TCCGGA	1 cut(s)	853
BspLI	GGNNCC	2 cut(s)	337, 451
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	3 cut(s)	162, 330, 343
BspTNI	GGTCTC	1 cut(s)	785
BsrDI	GCAATG	1 cut(s)	750
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	4 cut(s)	171, 232, 703, 816
BssECI	CCNNGG	3 cut(s)	222, 795, 825
BssMI	GATC	4 cut(s)	144, 167, 335, 391
BssT1I	CCWWGG	2 cut(s)	222, 825
Bst2UI	CCWGG	3 cut(s)	47, 89, 340
Bst4CI	ACNGT	2 cut(s)	595, 807
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstAUI	TGTACA	1 cut(s)	543
BstC8I	GCNNGC	4 cut(s)	305, 516, 552, 762
BstDEI	CTNAG	2 cut(s)	158, 610
BstDSI	CCRYGG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	4 cut(s)	147, 170, 338, 394
BstMAI	GTCTC	2 cut(s)	535, 785
BstMBI	GATC	4 cut(s)	144, 167, 335, 391
BstMWI	GCNNNNNNNGC	5 cut(s)	106, 218, 356, 761, 868
BstNI	CCWGG	3 cut(s)	47, 89, 340
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	3 cut(s)	45, 87, 338
BstSFI	CTRYAG	1 cut(s)	803
BstV1I	GCAGC	2 cut(s)	230, 541
BstV2I	GAAGAC	1 cut(s)	789
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
BsuRI	GGCC	2 cut(s)	452, 491
BtgI	CCRYGG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	239, 809
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	4 cut(s)	305, 516, 552, 762
CaiI	CAGNNNCTG	1 cut(s)	811
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	4 cut(s)	91, 179, 253, 450
Csp6I	GTAC	4 cut(s)	79, 133, 544, 741
CviAII	CATG	2 cut(s)	139, 223
CviQI	GTAC	4 cut(s)	79, 133, 544, 741
DdeI	CTNAG	2 cut(s)	158, 610
DpnI	GATC	4 cut(s)	146, 169, 337, 393
DpnII	GATC	4 cut(s)	144, 167, 335, 391
EaeI	YGGCCR	1 cut(s)	489
Ecl136II	GAGCTC	1 cut(s)	851
Eco130I	CCWWGG	2 cut(s)	222, 825
Eco24I	GRGCYC	1 cut(s)	853
Eco31I	GGTCTC	1 cut(s)	785
Eco47I	GGWCC	3 cut(s)	91, 179, 253
Eco53kI	GAGCTC	1 cut(s)	851
Eco57I	CTGAAG	1 cut(s)	429
Eco88I	CYCGRG	2 cut(s)	38, 284
EcoICRI	GAGCTC	1 cut(s)	851
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRII	CCWGG	3 cut(s)	45, 87, 338
EcoT14I	CCWWGG	2 cut(s)	222, 825
EcoT38I	GRGCYC	1 cut(s)	853
ErhI	CCWWGG	2 cut(s)	222, 825
FaeI	CATG	2 cut(s)	142, 226
FatI	CATG	2 cut(s)	138, 222
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	110, 219, 555
FriOI	GRGCYC	1 cut(s)	853
Fsp4HI	GCNGC	3 cut(s)	110, 219, 555
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	3 cut(s)	110, 219, 555
HaeIII	GGCC	2 cut(s)	452, 491
HapII	CCGG	2 cut(s)	182, 854
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	2 cut(s)	142, 226
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HindIII	AAGCTT	2 cut(s)	263, 860
HinfI	GANTC	1 cut(s)	193
HpaII	CCGG	2 cut(s)	182, 854
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	164, 386, 741
Hpy188I	TCNGA	4 cut(s)	95, 118, 346, 799
Hpy188III	TCNNGA	6 cut(s)	40, 148, 239, 284, 476, 854
Hpy8I	GTNNAC	3 cut(s)	164, 386, 741
HpyAV	CCTTC	5 cut(s)	115, 349, 405, 568, 765
HpyCH4III	ACNGT	2 cut(s)	595, 807
HpyCH4V	TGCA	6 cut(s)	212, 218, 248, 538, 755, 764
HpyF10VI	GCNNNNNNNGC	5 cut(s)	106, 218, 356, 761, 868
HpyF3I	CTNAG	2 cut(s)	158, 610
Hsp92II	CATG	2 cut(s)	142, 226
HspAI	GCGC	1 cut(s)	23
Kpn2I	TCCGGA	1 cut(s)	853
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	144, 167, 335, 391
LmnI	GCTCC	4 cut(s)	68, 571, 799, 856
Lsp1109I	GCAGC	2 cut(s)	230, 541
LweI	GCATC	2 cut(s)	490, 689
MaeI	CTAG	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	807
MalI	GATC	4 cut(s)	146, 169, 337, 393
MboI	GATC	4 cut(s)	144, 167, 335, 391
MboII	GAAGA	3 cut(s)	197, 389, 794
MfeI	CAATTG	1 cut(s)	26
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	853
MluCI	AATT	1 cut(s)	26
MlyI	GAGTC	1 cut(s)	187
MroI	TCCGGA	1 cut(s)	853
MseI	TTAA	2 cut(s)	465, 884
MspI	CCGG	2 cut(s)	182, 854
MspR9I	CCNGG	3 cut(s)	47, 89, 340
MunI	CAATTG	1 cut(s)	26
MvaI	CCWGG	3 cut(s)	47, 89, 340
MwoI	GCNNNNNNNGC	5 cut(s)	106, 218, 356, 761, 868
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	4 cut(s)	144, 167, 335, 391
NlaIII	CATG	2 cut(s)	142, 226
NlaIV	GGNNCC	2 cut(s)	337, 451
NmuCI	GTSAC	1 cut(s)	807
NspI	RCATGY	1 cut(s)	142
PaeR7I	CTCGAG	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	459
PkrI	GCNGC	3 cut(s)	111, 220, 556
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PpuMI	RGGWCCY	1 cut(s)	253
Psp124BI	GAGCTC	1 cut(s)	853
Psp5II	RGGWCCY	1 cut(s)	253
Psp6I	CCWGG	3 cut(s)	45, 87, 338
PspGI	CCWGG	3 cut(s)	45, 87, 338
PspN4I	GGNNCC	2 cut(s)	337, 451
PspPI	GGNCC	4 cut(s)	91, 179, 253, 450
PspPPI	RGGWCCY	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	811
PsuI	RGATCY	1 cut(s)	335
RsaI	GTAC	4 cut(s)	80, 134, 545, 742
RsaNI	GTAC	4 cut(s)	79, 133, 544, 741
SacI	GAGCTC	1 cut(s)	853
SaqAI	TTAA	2 cut(s)	465, 884
SatI	GCNGC	3 cut(s)	110, 219, 555
Sau3AI	GATC	4 cut(s)	144, 167, 335, 391
Sau96I	GGNCC	4 cut(s)	91, 179, 253, 450
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	3 cut(s)	47, 89, 340
SduI	GDGCHC	1 cut(s)	853
SfaNI	GCATC	2 cut(s)	490, 689
SfcI	CTRYAG	1 cut(s)	803
Sfr274I	CTCGAG	1 cut(s)	38
SinI	GGWCC	3 cut(s)	91, 179, 253
SlaI	CTCGAG	1 cut(s)	38
SmlI	CTYRAG	4 cut(s)	38, 101, 323, 432
SmoI	CTYRAG	4 cut(s)	38, 101, 323, 432
Sse9I	AATT	1 cut(s)	26
SsiI	CCGC	1 cut(s)	109
SspI	AATATT	1 cut(s)	483
SspMI	CTAG	1 cut(s)	308
SstI	GAGCTC	1 cut(s)	853
StyD4I	CCNGG	3 cut(s)	45, 87, 338
StyI	CCWWGG	2 cut(s)	222, 825
TaaI	ACNGT	2 cut(s)	595, 807
TaqI	TCGA	3 cut(s)	39, 51, 143
TasI	AATT	1 cut(s)	26
TatI	WGTACW	2 cut(s)	543, 740
TauI	GCSGC	1 cut(s)	112
Tru1I	TTAA	2 cut(s)	465, 884
Tru9I	TTAA	2 cut(s)	465, 884
TscAI	CASTG	2 cut(s)	239, 816
TseFI	GTSAC	1 cut(s)	807
TseI	GCWGC	2 cut(s)	218, 554
Tsp45I	GTSAC	1 cut(s)	807
TspDTI	ATGAA	1 cut(s)	891
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	2 cut(s)	239, 816
Van91I	CCANNNNNTGG	1 cut(s)	459
VpaK11BI	GGWCC	3 cut(s)	91, 179, 253
XceI	RCATGY	1 cut(s)	142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	38
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.