Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002435.1

Orthogroup ID

OG0004586

Physical Location & Seq

Genomic Coordinates Reverse (-)

3694 .. 5991

Gene Structure 2298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002435.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

atgatgatcttgagagattcatggaaaaacacaccatctagctgggaacactccgatgatccctgtggagtgccatgggaaggagtcaactgtactggtgcaagggtgactgaattgaggttatcagccatggggctcataggggaactttccaccggctacattgggcaactcgatgaactaacgtctttggatgtgtcattcaatcctggcatcacaggtcgtatttctccacaaatatcatttctcctgaagttaaataccctcttcagtggtactattccagatccgttgggagatattgaacagctaaccttcttggctctaaattcaaataacttatctggaacaataccttctgctttgggtcaactctccaacctctacttgcttgatctatcagacaatcagctgactggacctctcccaatctcaacctctacttctccaggaggattagacctcttgttaaaggctgaacacttccatttgagcaacaaccagctttcaggttccattccacccgagcttttcagttctgaaatgagactgattcatctgttccttgatggaaataaacttaccggggttattccaatgactttaggacttgttcagacttttgagatggttcggcttaatagaaatactctgaccggaagtgtcccctcaaacctaaacaaccttacaaatgtcaatgaactgaatttggccaacaacaacttgacaggccttttgccagacttgactggaatgaattccctcaattatgtagaccttagtaacaactcatttgacccatcagtagctccactttggttctcaaccttacccacacttactactctggttatggaattcggatcacttcaagggcctgtgccagagaatcttttcagccttccagaattacaggaagtgaaactgaaatacaatacatttaacggtacactgaacatgggtgataacatcagtctacaactggagcttgtggatctccagaacaatcagatttcccatctcactatagaagaagaatacaaggatgcattaatacttaaagggaacccgatatgttccggtagtctatcaaacactacttggtgtcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko04152 ko04921 map03008 map04152 map04921

Pfam Domains

Protein Families

EFG_C EFG_II EFG_IV GTP_EFTU GTP_EFTU_D2

Protein Analysis

370

Amino Acids

40.28

Weight (kDa)

4.36

Isoelectric Point (pI)

28.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49750
fragaria_vesca	FvH4_6g08970 FvH4_6g09001
prunus_persica	Prupe.6G301700_v2.0.a1
rosa_laevigata	RLG00000025099
rosa_multiflora	Rmu_co8402051.1_g000001 Rmu_sc0002435.1_g000001 Rmu_sc0010702.1_g000004 Rmu_sc0022643.1_g000002 Rmu_sc0035588.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241190 Rroxscaffold_6G00420360 Rroxscaffold_6G00420370
rosa_rugosa	Rorug03G0034500 Rorug03G0034500 Rorug03G0034600 Rorug03G0034700 Rorug03G0034800
rosa_samantha	Rh2AG320500 Rh3AG092500 Rh3AG092600 Rh3BG095700 Rh3CG096500 Rh3CG096700 Rh3DG096200 Rh3DG096300 Rh4AG031900
rosa_wichuraiana	Rw3G007950 Rw3G007960 Rw6G021920 Rw7G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	774, 976
AclWI	GGATC	4 cut(s)	53, 281, 871, 1002
AcoI	YGGCCR	1 cut(s)	711
AcsI	RAATTY	4 cut(s)	328, 706, 757, 857
AcuI	CTGAAG	2 cut(s)	253, 272
AfaI	GTAC	3 cut(s)	94, 277, 949
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	4 cut(s)	205, 305, 333, 872
AjnI	CCWGG	2 cut(s)	208, 448
AluBI	AGCT	7 cut(s)	42, 310, 412, 505, 529, 809, 988
AluI	AGCT	7 cut(s)	42, 310, 412, 505, 529, 809, 988
Alw26I	GTCTC	1 cut(s)	541
AlwI	GGATC	4 cut(s)	53, 281, 871, 1002
Ama87I	CYCGRG	1 cut(s)	524
AoxI	GGCC	3 cut(s)	711, 730, 875
ApoI	RAATTY	4 cut(s)	328, 706, 757, 857
ArsI	GACNNNNNNTTYG	2 cut(s)	718, 750
AseI	ATTAAT	1 cut(s)	1052
Asp700I	GAANNNNTTC	2 cut(s)	757, 893
AspS9I	GGNCC	2 cut(s)	419, 875
AsuC2I	CCSGG	1 cut(s)	586
AsuHPI	GGTGA	2 cut(s)	118, 974
AvaI	CYCGRG	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	419
BalI	TGGCCA	1 cut(s)	713
BanII	GRGCYC	1 cut(s)	138
BccI	CCATC	5 cut(s)	43, 563, 622, 808, 1026
BciT130I	CCWGG	2 cut(s)	210, 450
BcnI	CCSGG	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	541
BfaI	CTAG	1 cut(s)	39
BfmI	CTRYAG	1 cut(s)	1026
Bme1390I	CCNGG	3 cut(s)	210, 450, 586
Bme18I	GGWCC	1 cut(s)	419
BmeT110I	CYCGRG	1 cut(s)	524
BmgT120I	GGNCC	2 cut(s)	419, 875
BmiI	GGNNCC	2 cut(s)	514, 1067
BmrFI	CCNGG	3 cut(s)	210, 450, 586
BmsI	GCATC	2 cut(s)	222, 1036
BpmI	CTGGAG	3 cut(s)	432, 983, 1004
BpuEI	CTTGAG	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	586
BsaJI	CCNNGG	3 cut(s)	74, 129, 585
BsaWI	WCCGGW	2 cut(s)	656, 1079
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	4 cut(s)	100, 421, 754, 987
BseBI	CCWGG	2 cut(s)	210, 450
BseDI	CCNNGG	3 cut(s)	74, 129, 585
BseGI	GGATG	2 cut(s)	199, 1051
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseNI	ACTGG	4 cut(s)	100, 421, 754, 987
BseYI	CCCAGC	1 cut(s)	42
BshFI	GGCC	3 cut(s)	713, 732, 877
BsiHKCI	CYCGRG	1 cut(s)	524
BsiSI	CCGG	4 cut(s)	156, 585, 657, 1080
BslFI	GGGAC	1 cut(s)	650
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	541
BsmFI	GGGAC	1 cut(s)	650
BsnI	GGCC	3 cut(s)	713, 732, 877
BsoBI	CYCGRG	1 cut(s)	524
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	6 cut(s)	6, 58, 286, 394, 863, 994
Bsp19I	CCATGG	2 cut(s)	74, 129
BspANI	GGCC	3 cut(s)	713, 732, 877
BspLI	GGNNCC	2 cut(s)	514, 1067
BspPI	GGATC	4 cut(s)	53, 281, 871, 1002
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	4 cut(s)	100, 421, 754, 987
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	3 cut(s)	74, 129, 585
BssMI	GATC	6 cut(s)	6, 58, 286, 394, 863, 994
BssT1I	CCWWGG	2 cut(s)	74, 129
Bst2UI	CCWGG	2 cut(s)	210, 450
Bst4CI	ACNGT	2 cut(s)	92, 947
Bst6I	CTCTTC	1 cut(s)	272
BstDEI	CTNAG	1 cut(s)	779
BstDSI	CCRYGG	2 cut(s)	74, 129
BstF5I	GGATG	2 cut(s)	199, 1051
BstKTI	GATC	6 cut(s)	9, 61, 289, 397, 866, 997
BstMAI	GTCTC	1 cut(s)	541
BstMBI	GATC	6 cut(s)	6, 58, 286, 394, 863, 994
BstNI	CCWGG	2 cut(s)	210, 450
BstSCI	CCNGG	3 cut(s)	208, 448, 584
BstSFI	CTRYAG	1 cut(s)	1026
BstX2I	RGATCY	2 cut(s)	286, 994
BstXI	CCANNNNNNTGG	1 cut(s)	42
BstYI	RGATCY	2 cut(s)	286, 994
BsuRI	GGCC	3 cut(s)	713, 732, 877
BtgI	CCRYGG	2 cut(s)	74, 129
BtsCI	GGATG	2 cut(s)	199, 1051
BtsIMutI	CAGTG	2 cut(s)	277, 950
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	419, 875
Csp6I	GTAC	3 cut(s)	93, 276, 948
CviAII	CATG	4 cut(s)	21, 75, 130, 958
CviQI	GTAC	3 cut(s)	93, 276, 948
DdeI	CTNAG	1 cut(s)	779
DpnI	GATC	6 cut(s)	8, 60, 288, 396, 865, 996
DpnII	GATC	6 cut(s)	6, 58, 286, 394, 863, 994
EaeI	YGGCCR	1 cut(s)	711
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Eco130I	CCWWGG	2 cut(s)	74, 129
Eco147I	AGGCCT	1 cut(s)	732
Eco24I	GRGCYC	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	419
Eco57I	CTGAAG	2 cut(s)	253, 272
Eco88I	CYCGRG	1 cut(s)	524
EcoO109I	RGGNCCY	1 cut(s)	875
EcoRI	GAATTC	2 cut(s)	757, 857
EcoRII	CCWGG	2 cut(s)	208, 448
EcoT14I	CCWWGG	2 cut(s)	74, 129
EcoT22I	ATGCAT	1 cut(s)	1051
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	2 cut(s)	74, 129
FaeI	CATG	4 cut(s)	24, 78, 133, 961
FaiI	YATR	9 cut(s)	22, 76, 131, 140, 771, 854, 959, 1028, 1075
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	4 cut(s)	20, 74, 129, 957
FblI	GTMKAC	2 cut(s)	774, 976
FokI	GGATG	2 cut(s)	206, 1058
FriOI	GRGCYC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	39
GsaI	CCCAGC	1 cut(s)	46
GsuI	CTGGAG	3 cut(s)	432, 983, 1004
HaeIII	GGCC	3 cut(s)	713, 732, 877
HapII	CCGG	4 cut(s)	156, 585, 657, 1080
Hin1II	CATG	4 cut(s)	24, 78, 133, 961
HincII	GTYRAC	2 cut(s)	88, 371
HindII	GTYRAC	2 cut(s)	88, 371
HinfI	GANTC	4 cut(s)	17, 84, 553, 889
HpaII	CCGG	4 cut(s)	156, 585, 657, 1080
HphI	GGTGA	2 cut(s)	118, 974
Hpy166II	GTNNAC	5 cut(s)	88, 371, 775, 950, 977
Hpy188I	TCNGA	7 cut(s)	55, 403, 541, 618, 654, 863, 1011
Hpy188III	TCNNGA	6 cut(s)	10, 250, 284, 345, 905, 1000
Hpy8I	GTNNAC	5 cut(s)	88, 371, 775, 950, 977
HpyAV	CCTTC	4 cut(s)	74, 325, 366, 911
HpyCH4III	ACNGT	2 cut(s)	92, 947
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	101, 1049
HpyF3I	CTNAG	1 cut(s)	779
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	4 cut(s)	24, 78, 133, 961
Kzo9I	GATC	6 cut(s)	6, 58, 286, 394, 863, 994
LmnI	GCTCC	2 cut(s)	814, 985
LweI	GCATC	2 cut(s)	222, 1036
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	2 cut(s)	106, 782
MalI	GATC	6 cut(s)	8, 60, 288, 396, 865, 996
MboI	GATC	6 cut(s)	6, 58, 286, 394, 863, 994
MboII	GAAGA	3 cut(s)	259, 1043, 1046
MflI	RGATCY	2 cut(s)	286, 994
MhlI	GDGCHC	1 cut(s)	138
MlsI	TGGCCA	1 cut(s)	713
MluCI	AATT	7 cut(s)	113, 328, 706, 757, 766, 857, 908
MluNI	TGGCCA	1 cut(s)	713
MlyI	GAGTC	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	9 cut(s)	111, 275, 392, 432, 446, 448, 473, 679, 773
Mox20I	TGGCCA	1 cut(s)	713
Mph1103I	ATGCAT	1 cut(s)	1051
MroXI	GAANNNNTTC	2 cut(s)	757, 893
MscI	TGGCCA	1 cut(s)	713
MseI	TTAA	6 cut(s)	257, 470, 639, 942, 1052, 1059
MslI	CAYNNNNRTG	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	713
MspA1I	CMGCKG	1 cut(s)	412
MspI	CCGG	4 cut(s)	156, 585, 657, 1080
MspR9I	CCNGG	3 cut(s)	210, 450, 586
MvaI	CCWGG	2 cut(s)	210, 450
NciI	CCSGG	1 cut(s)	586
NcoI	CCATGG	2 cut(s)	74, 129
NdeII	GATC	6 cut(s)	6, 58, 286, 394, 863, 994
NlaIII	CATG	4 cut(s)	24, 78, 133, 961
NlaIV	GGNNCC	2 cut(s)	514, 1067
NmuCI	GTSAC	1 cut(s)	106
NsiI	ATGCAT	1 cut(s)	1051
PceI	AGGCCT	1 cut(s)	732
PdmI	GAANNNNTTC	2 cut(s)	757, 893
PfeI	GAWTC	3 cut(s)	17, 553, 889
PfoI	TCCNGGA	1 cut(s)	448
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PshBI	ATTAAT	1 cut(s)	1052
Psp6I	CCWGG	2 cut(s)	208, 448
PspFI	CCCAGC	1 cut(s)	42
PspGI	CCWGG	2 cut(s)	208, 448
PspN4I	GGNNCC	2 cut(s)	514, 1067
PspPI	GGNCC	2 cut(s)	419, 875
PsuI	RGATCY	2 cut(s)	286, 994
PvuII	CAGCTG	1 cut(s)	412
RsaI	GTAC	3 cut(s)	94, 277, 949
RsaNI	GTAC	3 cut(s)	93, 276, 948
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	6 cut(s)	257, 470, 639, 942, 1052, 1059
Sau3AI	GATC	6 cut(s)	6, 58, 286, 394, 863, 994
Sau96I	GGNCC	2 cut(s)	419, 875
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	3 cut(s)	210, 450, 586
SduI	GDGCHC	1 cut(s)	138
SfaNI	GCATC	2 cut(s)	222, 1036
SfcI	CTRYAG	1 cut(s)	1026
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	7 cut(s)	113, 328, 706, 757, 766, 857, 908
SseBI	AGGCCT	1 cut(s)	732
SspMI	CTAG	1 cut(s)	39
StuI	AGGCCT	1 cut(s)	732
StyD4I	CCNGG	3 cut(s)	208, 448, 584
StyI	CCWWGG	2 cut(s)	74, 129
TaaI	ACNGT	2 cut(s)	92, 947
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	1 cut(s)	174
TasI	AATT	7 cut(s)	113, 328, 706, 757, 766, 857, 908
TatI	WGTACW	1 cut(s)	92
TfiI	GAWTC	3 cut(s)	17, 553, 889
Tru1I	TTAA	6 cut(s)	257, 470, 639, 942, 1052, 1059
Tru9I	TTAA	6 cut(s)	257, 470, 639, 942, 1052, 1059
TscAI	CASTG	2 cut(s)	277, 957
TseFI	GTSAC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	5 cut(s)	9, 192, 545, 714, 770
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	2 cut(s)	277, 957
VpaK11BI	GGWCC	1 cut(s)	419
VspI	ATTAAT	1 cut(s)	1052
XapI	RAATTY	4 cut(s)	328, 706, 757, 857
XmiI	GTMKAC	2 cut(s)	774, 976
XmnI	GAANNNNTTC	2 cut(s)	757, 893
XspI	CTAG	1 cut(s)	39
Zsp2I	ATGCAT	1 cut(s)	1051

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.