Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004586

Physical Location & Seq

Genomic Coordinates Reverse (-)

2771677 .. 2772099

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0034600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAATGTCCAGGAAGCCGTTGCGATAGGTCTCCATCTGGTAGCTGCTGTCCCGAAAGTCTTTGAGGTTAATAACCCTGCTGCTAAAATCCTTGAGGTTAATAACCCTACTGCTGAAGTCCTTGAGCCGGTCCTTGAAGTCATCCTTGAGATTAATAACCATGTTGCTGTCCTGGAGCCGGTCCTTGAAGTCATCCTTGAGATTAATAACCATGCTTTTATCCTTGAAACGCTCCTTGATGCCAACCCTAGTCTAATCAGTTGGGGTCGCAAAAGAAGAAGAACTGCTGCTATCCTTGAACCGGTCCATAAAGTCCTTGAATGCGGCTATGGTCCATACTGTTGGGGTCGCAGAAGAAGAAGAGTAAGGGTGAGACATAGGTCTCTTAAGCATTTGTACCAACATACGACCGCATTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase_Tyr

Protein Analysis

140

Amino Acids

15.87

Weight (kDa)

9.1

Isoelectric Point (pI)

66.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49750
fragaria_vesca	FvH4_6g08970 FvH4_6g09001
prunus_persica	Prupe.6G301700_v2.0.a1
rosa_laevigata	RLG00000025099
rosa_multiflora	Rmu_co8402051.1_g000001 Rmu_sc0002435.1_g000001 Rmu_sc0010702.1_g000004 Rmu_sc0022643.1_g000002 Rmu_sc0035588.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241190 Rroxscaffold_6G00420360 Rroxscaffold_6G00420370
rosa_rugosa	Rorug03G0034500 Rorug03G0034500 Rorug03G0034600 Rorug03G0034700 Rorug03G0034800
rosa_samantha	Rh2AG320500 Rh3AG092500 Rh3AG092600 Rh3BG095700 Rh3CG096500 Rh3CG096700 Rh3DG096200 Rh3DG096300 Rh4AG031900
rosa_wichuraiana	Rw3G007950 Rw3G007960 Rw6G021920 Rw7G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	324, 411
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	3 cut(s)	127, 178, 301
AflII	CTTAAG	1 cut(s)	386
AgeI	ACCGGT	1 cut(s)	301
AgsI	TTSAA	5 cut(s)	137, 188, 227, 299, 320
AjnI	CCWGG	2 cut(s)	9, 171
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw26I	GTCTC	3 cut(s)	35, 367, 387
ApeKI	GCWGC	3 cut(s)	44, 80, 287
AseI	ATTAAT	2 cut(s)	153, 204
AsiGI	ACCGGT	1 cut(s)	301
AspS9I	GGNCC	4 cut(s)	130, 181, 304, 332
AsuHPI	GGTGA	1 cut(s)	382
AvaII	GGWCC	4 cut(s)	130, 181, 304, 332
BbvI	GCAGC	3 cut(s)	31, 67, 274
BccI	CCATC	1 cut(s)	42
BceAI	ACGGC	1 cut(s)	2
BcgI	CGANNNNNNTGC	1 cut(s)	397
BciT130I	CCWGG	2 cut(s)	11, 173
BcoDI	GTCTC	3 cut(s)	35, 367, 387
BfaI	CTAG	1 cut(s)	249
BfrI	CTTAAG	1 cut(s)	386
BisI	GCNGC	4 cut(s)	45, 81, 288, 325
BlsI	GCNGC	4 cut(s)	46, 82, 289, 326
Bme1390I	CCNGG	2 cut(s)	11, 173
Bme18I	GGWCC	4 cut(s)	130, 181, 304, 332
BmgT120I	GGNCC	4 cut(s)	130, 181, 304, 332
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	2 cut(s)	11, 173
BmsI	GCATC	1 cut(s)	229
BoxI	GACNNNNGTC	1 cut(s)	379
BpmI	CTGGAG	1 cut(s)	194
BpuEI	CTTGAG	4 cut(s)	113, 143, 167, 218
BsaI	GGTCTC	2 cut(s)	35, 387
BsaWI	WCCGGW	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 178, 301
Bse118I	RCCGGY	3 cut(s)	127, 178, 301
Bse3DI	GCAATG	1 cut(s)	413
BseBI	CCWGG	2 cut(s)	11, 173
BseGI	GGATG	2 cut(s)	141, 192
BseLI	CCNNNNNNNGG	3 cut(s)	127, 178, 301
BseMI	GCAATG	1 cut(s)	413
BseXI	GCAGC	3 cut(s)	31, 67, 274
Bsh1285I	CGRYCG	1 cut(s)	411
BshTI	ACCGGT	1 cut(s)	301
BsiEI	CGRYCG	1 cut(s)	411
BsiSI	CCGG	3 cut(s)	128, 179, 302
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	3 cut(s)	127, 178, 301
BsmAI	GTCTC	3 cut(s)	35, 367, 387
BsmFI	GGGAC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	326
Bso31I	GGTCTC	2 cut(s)	35, 387
BspACI	CCGC	2 cut(s)	324, 411
BspLI	GGNNCC	1 cut(s)	177
BspTI	CTTAAG	1 cut(s)	386
BspTNI	GGTCTC	2 cut(s)	35, 387
BsrDI	GCAATG	1 cut(s)	413
BsrFI	RCCGGY	3 cut(s)	127, 178, 301
BssAI	RCCGGY	3 cut(s)	127, 178, 301
Bst2UI	CCWGG	2 cut(s)	11, 173
Bst4CI	ACNGT	1 cut(s)	341
Bst6I	CTCTTC	1 cut(s)	355
BstAFI	CTTAAG	1 cut(s)	386
BstF5I	GGATG	2 cut(s)	141, 192
BstMAI	GTCTC	3 cut(s)	35, 367, 387
BstMCI	CGRYCG	1 cut(s)	411
BstNI	CCWGG	2 cut(s)	11, 173
BstPAI	GACNNNNGTC	1 cut(s)	379
BstSCI	CCNGG	2 cut(s)	9, 171
BstV1I	GCAGC	3 cut(s)	31, 67, 274
BstXI	CCANNNNNNTGG	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	141, 192
Cfr10I	RCCGGY	3 cut(s)	127, 178, 301
Cfr13I	GGNCC	4 cut(s)	130, 181, 304, 332
Csp6I	GTAC	1 cut(s)	397
CspAI	ACCGGT	1 cut(s)	301
CviAII	CATG	2 cut(s)	161, 212
CviJI	RGCY	5 cut(s)	17, 44, 127, 178, 327
CviKI_1	RGCY	5 cut(s)	17, 44, 127, 178, 327
CviQI	GTAC	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	355
Eco31I	GGTCTC	2 cut(s)	35, 387
Eco47I	GGWCC	4 cut(s)	130, 181, 304, 332
Eco57I	CTGAAG	1 cut(s)	135
EcoRII	CCWGG	2 cut(s)	9, 171
FaeI	CATG	2 cut(s)	164, 215
FaiI	YATR	7 cut(s)	162, 213, 309, 330, 337, 378, 405
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 180, 212
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	2 cut(s)	160, 211
Fnu4HI	GCNGC	4 cut(s)	45, 81, 288, 325
FokI	GGATG	2 cut(s)	128, 179
Fsp4HI	GCNGC	4 cut(s)	45, 81, 288, 325
FspBI	CTAG	1 cut(s)	249
GluI	GCNGC	4 cut(s)	45, 81, 288, 325
GsuI	CTGGAG	1 cut(s)	194
HapII	CCGG	3 cut(s)	128, 179, 302
Hin1II	CATG	2 cut(s)	164, 215
HpaII	CCGG	3 cut(s)	128, 179, 302
HphI	GGTGA	1 cut(s)	382
Hpy188III	TCNNGA	1 cut(s)	52
HpyCH4III	ACNGT	1 cut(s)	341
Hsp92II	CATG	2 cut(s)	164, 215
LmnI	GCTCC	2 cut(s)	175, 237
LpnPI	CCDG	8 cut(s)	23, 23, 90, 141, 158, 185, 192, 315
Lsp1109I	GCAGC	3 cut(s)	31, 67, 274
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	249
MboII	GAAGA	5 cut(s)	288, 291, 366, 369, 372
MnlI	CCTC	2 cut(s)	58, 88
MseI	TTAA	5 cut(s)	69, 99, 153, 204, 387
MspCI	CTTAAG	1 cut(s)	386
MspI	CCGG	3 cut(s)	128, 179, 302
MspR9I	CCNGG	2 cut(s)	11, 173
Mva1269I	GAATGC	1 cut(s)	326
MvaI	CCWGG	2 cut(s)	11, 173
NlaIII	CATG	2 cut(s)	164, 215
NlaIV	GGNNCC	1 cut(s)	177
PctI	GAATGC	1 cut(s)	326
PfoI	TCCNGGA	2 cut(s)	9, 171
PinAI	ACCGGT	1 cut(s)	301
PkrI	GCNGC	4 cut(s)	46, 82, 289, 326
PshAI	GACNNNNGTC	1 cut(s)	379
PshBI	ATTAAT	2 cut(s)	153, 204
Psp6I	CCWGG	2 cut(s)	9, 171
PspGI	CCWGG	2 cut(s)	9, 171
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	4 cut(s)	130, 181, 304, 332
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SaqAI	TTAA	5 cut(s)	69, 99, 153, 204, 387
SatI	GCNGC	4 cut(s)	45, 81, 288, 325
Sau96I	GGNCC	4 cut(s)	130, 181, 304, 332
ScrFI	CCNGG	2 cut(s)	11, 173
SetI	ASST	5 cut(s)	31, 46, 69, 99, 383
SfaNI	GCATC	1 cut(s)	229
SinI	GGWCC	4 cut(s)	130, 181, 304, 332
SmlI	CTYRAG	5 cut(s)	92, 122, 146, 197, 386
SmoI	CTYRAG	5 cut(s)	92, 122, 146, 197, 386
SsiI	CCGC	2 cut(s)	324, 411
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	2 cut(s)	9, 171
TaaI	ACNGT	1 cut(s)	341
TauI	GCSGC	1 cut(s)	327
Tru1I	TTAA	5 cut(s)	69, 99, 153, 204, 387
Tru9I	TTAA	5 cut(s)	69, 99, 153, 204, 387
TseI	GCWGC	3 cut(s)	44, 80, 287
TspDTI	ATGAA	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	386
VpaK11BI	GGWCC	4 cut(s)	130, 181, 304, 332
VspI	ATTAAT	2 cut(s)	153, 204
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.