Rh3DG096200

GTPase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0004586
Physical Location & Seq
Forward (+)
7582698 .. 7585353
2656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG096200.1

Sequence Viewer

Length: 654 bp
ATGATGATCTTGAGAGATTCATGGAAAAACACACCATCTAGCTGGGAACACTCCGATGATCCCTGTGGAGTGCCATGGGAAGGAGTCAACTGTACTGGTGCAAGGGTGACTGAATTGAGGTTATCAGCCATGGGGCTCATAGGGGAACTTTCCAGCGGCTACATTGGGCAACTCGATGAACTAACGTCTTTGGATGTGTCATTCAATCCTGGCATCACAGGTCGTATTTCTCCACAAATATCATTTCTCCTGAAGTTAAATACCCTGAACCTAGCTGGATGCAGCTTCAGTGGTAGTATTCCAGATCAGTTGGGAGATATTGAACAGCTAACCTTCTTGGCTCTGAATTCAAATAACTTATCTGGAACAATACCTTCTGCTTTGGGTCAACTCTCCAACCTCTACTTGCTTGATCTATCAGACAATCAGCTGACTGGACCTCTCCCAATCTCAACCTCTACTTCTCCAGGAGGATTAGACCTGTTGTTAAAGGCTGAACACTTCCATTTGAGCAACAACCAGCTTTCAGGTTCCATTCCACCCGAGCTTTTCAGTTCTGAAATGAGACTGATTCATCTGTTCCTTGATGGAAATAAACTTACCGGGGTTATTCCAATGACTTTAGGACTTGTTCAGACTTTTGAGATGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko04152 ko04921 map03008 map04152 map04921
Pfam Domains
Protein Families
EFG_C EFG_II EFG_IV GTP_EFTU GTP_EFTU_D2

Protein Analysis

217

Amino Acids

23.32

Weight (kDa)

4.46

Isoelectric Point (pI)

24.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 156
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 1 cut(s) 346
AcuI CTGAAG 2 cut(s) 271, 272
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 3 cut(s) 205, 323, 351
AjnI CCWGG 2 cut(s) 208, 466
AluBI AGCT 7 cut(s) 42, 275, 285, 328, 430, 523, 547
AluI AGCT 7 cut(s) 42, 275, 285, 328, 430, 523, 547
Alw26I GTCTC 1 cut(s) 559
AlwI GGATC 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 542
ApeKI GCWGC 1 cut(s) 282
ApoI RAATTY 1 cut(s) 346
AspS9I GGNCC 1 cut(s) 437
AsuC2I CCSGG 1 cut(s) 604
AsuHPI GGTGA 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 542
AvaII GGWCC 1 cut(s) 437
BanII GRGCYC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 294
BccI CCATC 3 cut(s) 43, 581, 640
BciT130I CCWGG 2 cut(s) 210, 468
BcnI CCSGG 1 cut(s) 604
BcoDI GTCTC 1 cut(s) 559
BfaI CTAG 2 cut(s) 39, 272
BisI GCNGC 2 cut(s) 157, 283
BlsI GCNGC 2 cut(s) 158, 284
Bme1390I CCNGG 3 cut(s) 210, 468, 604
Bme18I GGWCC 1 cut(s) 437
BmeT110I CYCGRG 1 cut(s) 542
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 532
BmrFI CCNGG 3 cut(s) 210, 468, 604
BmsI GCATC 2 cut(s) 222, 269
BpmI CTGGAG 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 31
BpuMI CCSGG 1 cut(s) 604
BsaJI CCNNGG 3 cut(s) 74, 129, 603
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 100, 439
BseBI CCWGG 2 cut(s) 210, 468
BseDI CCNNGG 3 cut(s) 74, 129, 603
BseGI GGATG 2 cut(s) 199, 284
BseLI CCNNNNNNNGG 1 cut(s) 80
BseNI ACTGG 2 cut(s) 100, 439
BseXI GCAGC 1 cut(s) 294
BseYI CCCAGC 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 542
BsiSI CCGG 1 cut(s) 603
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 559
BsoBI CYCGRG 1 cut(s) 542
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 4 cut(s) 6, 58, 304, 412
Bsp19I CCATGG 2 cut(s) 74, 129
BspACI CCGC 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 532
BspPI GGATC 1 cut(s) 53
BsrI ACTGG 2 cut(s) 100, 439
BssECI CCNNGG 3 cut(s) 74, 129, 603
BssMI GATC 4 cut(s) 6, 58, 304, 412
BssT1I CCWWGG 2 cut(s) 74, 129
Bst2UI CCWGG 2 cut(s) 210, 468
Bst4CI ACNGT 1 cut(s) 92
BstDSI CCRYGG 2 cut(s) 74, 129
BstF5I GGATG 2 cut(s) 199, 284
BstKTI GATC 4 cut(s) 9, 61, 307, 415
BstMAI GTCTC 1 cut(s) 559
BstMBI GATC 4 cut(s) 6, 58, 304, 412
BstNI CCWGG 2 cut(s) 210, 468
BstSCI CCNGG 3 cut(s) 208, 466, 602
BstV1I GCAGC 1 cut(s) 294
BstXI CCANNNNNNTGG 1 cut(s) 42
BtgI CCRYGG 2 cut(s) 74, 129
BtsCI GGATG 2 cut(s) 199, 284
BtsIMutI CAGTG 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 437
Csp6I GTAC 1 cut(s) 93
CviAII CATG 3 cut(s) 21, 75, 130
CviQI GTAC 1 cut(s) 93
DpnI GATC 4 cut(s) 8, 60, 306, 414
DpnII GATC 4 cut(s) 6, 58, 304, 412
Eco130I CCWWGG 2 cut(s) 74, 129
Eco24I GRGCYC 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 437
Eco57I CTGAAG 2 cut(s) 271, 272
Eco88I CYCGRG 1 cut(s) 542
EcoRI GAATTC 1 cut(s) 346
EcoRII CCWGG 2 cut(s) 208, 466
EcoT14I CCWWGG 2 cut(s) 74, 129
EcoT38I GRGCYC 1 cut(s) 138
ErhI CCWWGG 2 cut(s) 74, 129
FaeI CATG 3 cut(s) 24, 78, 133
FaiI YATR 4 cut(s) 22, 76, 131, 140
FatI CATG 3 cut(s) 20, 74, 129
Fnu4HI GCNGC 2 cut(s) 157, 283
FokI GGATG 2 cut(s) 206, 291
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 2 cut(s) 157, 283
FspBI CTAG 2 cut(s) 39, 272
GluI GCNGC 2 cut(s) 157, 283
GsaI CCCAGC 1 cut(s) 46
GsuI CTGGAG 1 cut(s) 450
HapII CCGG 1 cut(s) 603
Hin1II CATG 3 cut(s) 24, 78, 133
HincII GTYRAC 2 cut(s) 88, 389
HindII GTYRAC 2 cut(s) 88, 389
HinfI GANTC 3 cut(s) 17, 84, 571
HpaII CCGG 1 cut(s) 603
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 2 cut(s) 88, 389
Hpy188I TCNGA 5 cut(s) 55, 345, 421, 559, 636
Hpy188III TCNNGA 4 cut(s) 10, 250, 302, 363
Hpy8I GTNNAC 2 cut(s) 88, 389
HpyAV CCTTC 3 cut(s) 74, 343, 384
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 2 cut(s) 101, 282
HpySE526I ACGT 1 cut(s) 185
Hsp92II CATG 3 cut(s) 24, 78, 133
Kzo9I GATC 4 cut(s) 6, 58, 304, 412
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 2 cut(s) 222, 269
MaeI CTAG 2 cut(s) 39, 272
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 106
MalI GATC 4 cut(s) 8, 60, 306, 414
MboI GATC 4 cut(s) 6, 58, 304, 412
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 2 cut(s) 113, 346
MlyI GAGTC 1 cut(s) 93
MmeI TCCRAC 1 cut(s) 420
MnlI CCTC 5 cut(s) 111, 410, 450, 464, 466
MseI TTAA 2 cut(s) 257, 488
MslI CAYNNNNRTG 1 cut(s) 54
MspA1I CMGCKG 2 cut(s) 156, 430
MspI CCGG 1 cut(s) 603
MspR9I CCNGG 3 cut(s) 210, 468, 604
MvaI CCWGG 2 cut(s) 210, 468
NciI CCSGG 1 cut(s) 604
NcoI CCATGG 2 cut(s) 74, 129
NdeII GATC 4 cut(s) 6, 58, 304, 412
NlaIII CATG 3 cut(s) 24, 78, 133
NlaIV GGNNCC 1 cut(s) 532
NmuCI GTSAC 1 cut(s) 106
PfeI GAWTC 2 cut(s) 17, 571
PfoI TCCNGGA 1 cut(s) 466
PkrI GCNGC 2 cut(s) 158, 284
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 208, 466
PspFI CCCAGC 1 cut(s) 42
PspGI CCWGG 2 cut(s) 208, 466
PspN4I GGNNCC 1 cut(s) 532
PspPI GGNCC 1 cut(s) 437
PvuII CAGCTG 1 cut(s) 430
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
RseI CAYNNNNRTG 1 cut(s) 54
SaqAI TTAA 2 cut(s) 257, 488
SatI GCNGC 2 cut(s) 157, 283
Sau3AI GATC 4 cut(s) 6, 58, 304, 412
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 3 cut(s) 210, 468, 604
SduI GDGCHC 1 cut(s) 138
SfaNI GCATC 2 cut(s) 222, 269
SinI GGWCC 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 2 cut(s) 113, 346
SsiI CCGC 1 cut(s) 156
SspMI CTAG 2 cut(s) 39, 272
StyD4I CCNGG 3 cut(s) 208, 466, 602
StyI CCWWGG 2 cut(s) 74, 129
TaaI ACNGT 1 cut(s) 92
TaiI ACGT 1 cut(s) 188
TaqI TCGA 1 cut(s) 174
TasI AATT 2 cut(s) 113, 346
TatI WGTACW 1 cut(s) 92
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 2 cut(s) 17, 571
Tru1I TTAA 2 cut(s) 257, 488
Tru9I TTAA 2 cut(s) 257, 488
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 1 cut(s) 282
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 3 cut(s) 9, 192, 563
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 1 cut(s) 346
XspI CTAG 2 cut(s) 39, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.