Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004586

Physical Location & Seq

Genomic Coordinates Reverse (-)

33278087 .. 33309233

Gene Structure 31147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00241190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGATTCTTGTCGGTGGCTCGGTTGGGTTGAGGTGGAATTTGTGTGTAGTTATTTATGAACATTTGAATGGTTCTGCTTCTGCCCTATGTGACTTGATATTTTGTTGCCAGTATATTGACCGGTGTAGAATCGCTTCTCTAATGACACTATGGAGTAATACGCCTCCAAGTTGGGGGACTCTGGATCCTTGTGAAGATGGTTGGGATGGCATTGGGTGTCACAACATGCGTGTGGATCTATCTTACAACAAGGGCCTGCCAGGACTCCCAGCAGAAATTGGCAGTTTGAAGAAGCTATCTAACATAGGGCTTGATCTGCTTGGGTTGGGAGAGCACCATCCTCGGCATCTCCATATCTTTCTCCACCCTCGATGGAGAAATATTCGGTATCATCTTTGGGGTCGGCTATTTCGCGCACGACGTTTGTTGTGCCCTGTATCAAGTCGGTTTTTCATCTTGGCCTGTGGTGTGGTAACTTCTTCTCCGATCCGGTCGAGCCTACCTCTGTTCAATAGAGACATGCGGAGGCTACACTCGCTTTCCGGGATAGGATTGGCAACGAGAGTCCGGCGTTTTTGGCCAATCCGGGGGCGTTTGAAATCGGAGGCGTGCGGTTTTGGTTTGGTGGCGGGGTGGATGAGTGAGCTATGTTTTAACCTAGTTCCCCGATGCACCGGAGTGGTGCTGTCGCTTGTCTTTATTGCATCCCGGATCGAGGTGGTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 Pkinase Pkinase_Tyr

Protein Analysis

242

Amino Acids

27.21

Weight (kDa)

9.6

Isoelectric Point (pI)

55.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49750
fragaria_vesca	FvH4_6g08970 FvH4_6g09001
prunus_persica	Prupe.6G301700_v2.0.a1
rosa_laevigata	RLG00000025099
rosa_multiflora	Rmu_co8402051.1_g000001 Rmu_sc0002435.1_g000001 Rmu_sc0010702.1_g000004 Rmu_sc0022643.1_g000002 Rmu_sc0035588.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241190 Rroxscaffold_6G00420360 Rroxscaffold_6G00420370
rosa_rugosa	Rorug03G0034500 Rorug03G0034500 Rorug03G0034600 Rorug03G0034700 Rorug03G0034800
rosa_samantha	Rh2AG320500 Rh3AG092500 Rh3AG092600 Rh3BG095700 Rh3CG096500 Rh3CG096700 Rh3DG096200 Rh3DG096300 Rh4AG031900
rosa_wichuraiana	Rw3G007950 Rw3G007960 Rw6G021920 Rw7G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	414
AciI	CCGC	3 cut(s)	523, 612, 629
AclWI	GGATC	5 cut(s)	179, 192, 243, 481, 719
AcoI	YGGCCR	1 cut(s)	578
AcsI	RAATTY	1 cut(s)	37
AfiI	CCNNNNNNNGG	3 cut(s)	173, 587, 715
AgeI	ACCGGT	1 cut(s)	120
AgsI	TTSAA	4 cut(s)	67, 289, 511, 598
AjnI	CCWGG	1 cut(s)	259
AleI	CACNNNNGTG	1 cut(s)	677
AluBI	AGCT	2 cut(s)	295, 646
AluI	AGCT	2 cut(s)	295, 646
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	1 cut(s)	510
AlwI	GGATC	5 cut(s)	179, 192, 243, 481, 719
AoxI	GGCC	3 cut(s)	253, 459, 578
ApoI	RAATTY	1 cut(s)	37
AsiGI	ACCGGT	1 cut(s)	120
Asp700I	GAANNNNTTC	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	253
AsuC2I	CCSGG	3 cut(s)	544, 587, 709
BaeGI	GKGCMC	1 cut(s)	434
BalI	TGGCCA	1 cut(s)	580
BamHI	GGATCC	1 cut(s)	184
BarI	GAAGNNNNNNTAC	2 cut(s)	118, 150
Bbv12I	GWGCWC	1 cut(s)	336
BccI	CCATC	4 cut(s)	191, 200, 345, 366
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciT130I	CCWGG	1 cut(s)	261
BcnI	CCSGG	3 cut(s)	544, 587, 709
BcoDI	GTCTC	1 cut(s)	510
BfaI	CTAG	2 cut(s)	659, 727
Bme1390I	CCNGG	4 cut(s)	261, 544, 587, 709
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	4 cut(s)	261, 544, 587, 709
BmsI	GCATC	3 cut(s)	355, 659, 713
BplI	GAGNNNNNCTC	2 cut(s)	487, 519
BpuMI	CCSGG	3 cut(s)	544, 587, 709
BsaJI	CCNNGG	2 cut(s)	341, 586
BsaWI	WCCGGW	3 cut(s)	120, 489, 674
BsaXI	ACNNNNNCTCC	2 cut(s)	466, 496
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 587, 715
Bse118I	RCCGGY	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	341, 586
BseGI	GGATG	4 cut(s)	211, 337, 642, 704
BseLI	CCNNNNNNNGG	3 cut(s)	173, 587, 715
BseNI	ACTGG	1 cut(s)	109
BseSI	GKGCMC	1 cut(s)	434
BseYI	CCCAGC	1 cut(s)	268
Bsh1236I	CGCG	1 cut(s)	414
Bsh1285I	CGRYCG	1 cut(s)	494
BshFI	GGCC	3 cut(s)	255, 461, 580
BshTI	ACCGGT	1 cut(s)	120
BsiEI	CGRYCG	1 cut(s)	494
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	7 cut(s)	121, 490, 543, 568, 586, 675, 709
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	3 cut(s)	173, 587, 715
BsmAI	GTCTC	1 cut(s)	510
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	3 cut(s)	255, 461, 580
Bsp1286I	GDGCHC	2 cut(s)	336, 434
Bsp143I	GATC	6 cut(s)	184, 235, 313, 486, 711, 723
BspACI	CCGC	3 cut(s)	523, 612, 629
BspANI	GGCC	3 cut(s)	255, 461, 580
BspFNI	CGCG	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	186
BspPI	GGATC	5 cut(s)	179, 192, 243, 481, 719
BsrFI	RCCGGY	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	2 cut(s)	341, 586
BssMI	GATC	6 cut(s)	184, 235, 313, 486, 711, 723
Bst2UI	CCWGG	1 cut(s)	261
BstC8I	GCNNGC	2 cut(s)	257, 610
BstF5I	GGATG	4 cut(s)	211, 337, 642, 704
BstFNI	CGCG	1 cut(s)	414
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	6 cut(s)	187, 238, 316, 489, 714, 726
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	6 cut(s)	184, 235, 313, 486, 711, 723
BstMCI	CGRYCG	1 cut(s)	494
BstMWI	GCNNNNNNNGC	3 cut(s)	316, 535, 577
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	2 cut(s)	229, 523
BstSCI	CCNGG	4 cut(s)	259, 542, 585, 707
BstSLI	GKGCMC	1 cut(s)	434
BstUI	CGCG	1 cut(s)	414
BstX2I	RGATCY	2 cut(s)	184, 235
BstYI	RGATCY	2 cut(s)	184, 235
BsuRI	GGCC	3 cut(s)	255, 461, 580
BtsCI	GGATG	4 cut(s)	211, 337, 642, 704
Cac8I	GCNNGC	2 cut(s)	257, 610
CfoI	GCGC	1 cut(s)	416
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	253
CspAI	ACCGGT	1 cut(s)	120
CviAII	CATG	2 cut(s)	226, 520
DpnI	GATC	6 cut(s)	186, 237, 315, 488, 713, 725
DpnII	GATC	6 cut(s)	184, 235, 313, 486, 711, 723
EaeI	YGGCCR	1 cut(s)	578
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	259
FaeI	CATG	2 cut(s)	229, 523
FaiI	YATR	9 cut(s)	57, 88, 114, 151, 227, 305, 354, 521, 649
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	2 cut(s)	225, 519
FauI	CCCGC	1 cut(s)	622
FokI	GGATG	4 cut(s)	218, 324, 649, 691
FspBI	CTAG	2 cut(s)	659, 727
GlaI	GCGC	1 cut(s)	415
GsaI	CCCAGC	1 cut(s)	272
HaeIII	GGCC	3 cut(s)	255, 461, 580
HapII	CCGG	7 cut(s)	121, 490, 543, 568, 586, 675, 709
HhaI	GCGC	1 cut(s)	416
Hin1II	CATG	2 cut(s)	229, 523
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HinfI	GANTC	5 cut(s)	4, 129, 178, 264, 564
HpaII	CCGG	7 cut(s)	121, 490, 543, 568, 586, 675, 709
Hpy188I	TCNGA	2 cut(s)	486, 604
Hpy188III	TCNNGA	1 cut(s)	182
Hpy99I	CGWCG	1 cut(s)	423
HpyCH4IV	ACGT	1 cut(s)	421
HpyCH4V	TGCA	2 cut(s)	672, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	316, 535, 577
HpySE526I	ACGT	1 cut(s)	421
Hsp92II	CATG	2 cut(s)	229, 523
HspAI	GCGC	1 cut(s)	414
Kzo9I	GATC	6 cut(s)	184, 235, 313, 486, 711, 723
LweI	GCATC	3 cut(s)	355, 659, 713
MaeI	CTAG	2 cut(s)	659, 727
MaeII	ACGT	1 cut(s)	421
MaeIII	GTNAC	3 cut(s)	89, 218, 472
MalI	GATC	6 cut(s)	186, 237, 315, 488, 713, 725
MboI	GATC	6 cut(s)	184, 235, 313, 486, 711, 723
MboII	GAAGA	3 cut(s)	206, 301, 471
MflI	RGATCY	2 cut(s)	184, 235
MhlI	GDGCHC	2 cut(s)	336, 434
MlsI	TGGCCA	1 cut(s)	580
MluCI	AATT	2 cut(s)	37, 276
MluNI	TGGCCA	1 cut(s)	580
MlyI	GAGTC	3 cut(s)	172, 258, 573
MnlI	CCTC	8 cut(s)	24, 174, 351, 378, 513, 519, 598, 709
Mox20I	TGGCCA	1 cut(s)	580
MroXI	GAANNNNTTC	1 cut(s)	133
MscI	TGGCCA	1 cut(s)	580
MseI	TTAA	1 cut(s)	654
MslI	CAYNNNNRTG	3 cut(s)	66, 230, 677
Msp20I	TGGCCA	1 cut(s)	580
MspI	CCGG	7 cut(s)	121, 490, 543, 568, 586, 675, 709
MspR9I	CCNGG	4 cut(s)	261, 544, 587, 709
MvaI	CCWGG	1 cut(s)	261
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	3 cut(s)	316, 535, 577
NciI	CCSGG	3 cut(s)	544, 587, 709
NdeII	GATC	6 cut(s)	184, 235, 313, 486, 711, 723
NlaIII	CATG	2 cut(s)	229, 523
NlaIV	GGNNCC	1 cut(s)	186
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	2 cut(s)	89, 218
NspI	RCATGY	2 cut(s)	229, 523
OliI	CACNNNNGTG	1 cut(s)	677
PcsI	WCGNNNNNNNCGW	1 cut(s)	418
PdmI	GAANNNNTTC	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	4, 129
PfoI	TCCNGGA	2 cut(s)	542, 707
PinAI	ACCGGT	1 cut(s)	120
PleI	GAGTC	3 cut(s)	172, 258, 572
PpsI	GAGTC	3 cut(s)	172, 258, 572
Psp6I	CCWGG	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	253
PsuI	RGATCY	2 cut(s)	184, 235
RseI	CAYNNNNRTG	3 cut(s)	66, 230, 677
SaqAI	TTAA	1 cut(s)	654
Sau3AI	GATC	6 cut(s)	184, 235, 313, 486, 711, 723
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	3 cut(s)	172, 258, 573
ScrFI	CCNGG	4 cut(s)	261, 544, 587, 709
SduI	GDGCHC	2 cut(s)	336, 434
SetI	ASST	7 cut(s)	35, 297, 424, 505, 648, 660, 720
SfaNI	GCATC	3 cut(s)	355, 659, 713
SmiMI	CAYNNNNRTG	3 cut(s)	66, 230, 677
Sse9I	AATT	2 cut(s)	37, 276
SsiI	CCGC	3 cut(s)	523, 612, 629
SspI	AATATT	1 cut(s)	382
SspMI	CTAG	2 cut(s)	659, 727
StyD4I	CCNGG	4 cut(s)	259, 542, 585, 707
TaiI	ACGT	1 cut(s)	424
TaqI	TCGA	3 cut(s)	370, 494, 714
TasI	AATT	2 cut(s)	37, 276
TfiI	GAWTC	2 cut(s)	4, 129
Tru1I	TTAA	1 cut(s)	654
Tru9I	TTAA	1 cut(s)	654
TseFI	GTSAC	2 cut(s)	89, 218
Tsp45I	GTSAC	2 cut(s)	89, 218
TspDTI	ATGAA	2 cut(s)	72, 442
XapI	RAATTY	1 cut(s)	37
XceI	RCATGY	2 cut(s)	229, 523
XmnI	GAANNNNTTC	1 cut(s)	133
XspI	CTAG	2 cut(s)	659, 727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.