Rh3AG092600
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0004586
Physical Location & Seq
Forward (+)
7583484 .. 7586642
3159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG092600.1

Sequence Viewer

Length: 1032 bp
ATGGAGGCCACTACAGAGGAACAGGGATTATCAACCATGGGCCTCATAGGGGAACTCAGTAGCTACATTGAGGGACTCACTGAACTAAACTCCTTGGACCTGTCATTCAACCCTGGACTCCAAGGTCCTCTTCCTCCACAGTTAGGGGATCTCCCAAAGTTAAATATCCTGATACTAGCTGGCTGCAGCTTCAGTGGCAACATTCCAGATGAGTTGGGAAATCTTGAACAGCTAGCGTTCTTGGCTCTGAATACAAATTACTTCACTGGTAGCATACCTCCTTCTTTAGGTAAGCTCTCCAAACTCTACTGGCTTGATGTGGCAGACAATCAATTGAGCGGACCTCTACCAATTTCGACATCCACTTCTCCAGGCTTAGACCTCTTGTTAAACGCTAAACATTTCCATTTGAACAAGAACCAGCTTTCAGGTTCTATTCCACTCGAGCTTTTCAGCTCCGAGATGATATTGATACATGCGTTACTTGACGAAAACAATTTTACTGGGAGTATTCCAATGACATTAGGACTTGTTAAAACTCTTGAGATGGTTCGGCTTAATAGAAATGCTCTGACCGGAAGTGTCCCCTCAAACCTTAACAACCTTACAAATGTCAATGAACTAAATTTGGCCAACAACAAATTGGCAGGCCCCTTGCCTGACTTAACTGGAATGAATTCTCTCAATTATGTAGACCTTAGTAACAACTCATTTGACCCATCTGAAGCTCCACTTTGGTTCTCAACCTTACCCACACTCACCACTCTGGTTATGGAATTTGGATCACTTCAAGGGCCTGTGCCAGAGAAGCTTTTCAGCCTTCCAGAATTACAGCAAGTGAGACTGAAATACAATAAGTTTAATGGTGCATTAAACATGGGCGATAGCATTAGTCTACAACTGGAGCTTGTGGATCTCCAGAACAATCAGATTTCCCAGCTCACTATAGAAGAAGAATACAAAGATGCATTGATACTTAAAGGGAACCCGATATGCGCCGGTAGTCTATCAAACACTACTTGGTGTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 Pkinase_Tyr

Protein Analysis

343

Amino Acids

37.18

Weight (kDa)

4.36

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 46 - 295 2.1e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 123
AccBSI CCGCTC 1 cut(s) 339
AccI GTMKAC 2 cut(s) 693, 895
AciI CCGC 1 cut(s) 339
AclWI GGATC 3 cut(s) 156, 790, 921
AcoI YGGCCR 1 cut(s) 630
AcsI RAATTY 3 cut(s) 625, 676, 776
AcuI CTGAAG 2 cut(s) 175, 744
AfiI CCNNNNNNNGG 3 cut(s) 49, 143, 287
AgsI TTSAA 4 cut(s) 109, 227, 412, 791
AjnI CCWGG 2 cut(s) 112, 370
AjuI GAANNNNNNNTTGG 2 cut(s) 114, 146
Alw26I GTCTC 1 cut(s) 835
AlwI GGATC 3 cut(s) 156, 790, 921
Ama87I CYCGRG 1 cut(s) 443
AoxI GGCC 5 cut(s) 6, 40, 630, 649, 794
ApeKI GCWGC 2 cut(s) 183, 186
ApoI RAATTY 3 cut(s) 625, 676, 776
Asp700I GAANNNNTTC 2 cut(s) 676, 812
AspLEI GCGC 1 cut(s) 998
AspS9I GGNCC 6 cut(s) 40, 97, 125, 341, 650, 794
AsuHPI GGTGA 1 cut(s) 751
AsuNHI GCTAGC 1 cut(s) 232
AvaI CYCGRG 1 cut(s) 443
AvaII GGWCC 3 cut(s) 97, 125, 341
BaeI ACNNNNGTAYC 2 cut(s) 464, 497
BalI TGGCCA 1 cut(s) 632
BbvI GCAGC 2 cut(s) 170, 198
BccI CCATC 2 cut(s) 541, 727
BciT130I CCWGG 2 cut(s) 114, 372
BcoDI GTCTC 1 cut(s) 835
BfaI CTAG 2 cut(s) 176, 233
BfmI CTRYAG 3 cut(s) 12, 184, 945
BisI GCNGC 2 cut(s) 184, 187
BlsI GCNGC 2 cut(s) 185, 188
Bme1390I CCNGG 2 cut(s) 114, 372
Bme18I GGWCC 3 cut(s) 97, 125, 341
BmeT110I CYCGRG 1 cut(s) 443
BmgT120I GGNCC 6 cut(s) 40, 97, 125, 341, 650, 794
BmiI GGNNCC 2 cut(s) 652, 986
BmrFI CCNGG 2 cut(s) 114, 372
BmrI ACTGGG 1 cut(s) 513
BmsI GCATC 1 cut(s) 955
BmtI GCTAGC 1 cut(s) 236
BmuI ACTGGG 1 cut(s) 513
BplI GAGNNNNNCTC 2 cut(s) 328, 360
BpmI CTGGAG 3 cut(s) 354, 902, 923
BpuEI CTTGAG 1 cut(s) 563
BsaJI CCNNGG 4 cut(s) 36, 93, 112, 121
BsaWI WCCGGW 1 cut(s) 575
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 143, 287
Bse118I RCCGGY 1 cut(s) 998
Bse1I ACTGG 5 cut(s) 271, 314, 508, 673, 906
BseBI CCWGG 2 cut(s) 114, 372
BseDI CCNNGG 4 cut(s) 36, 93, 112, 121
BseGI GGATG 1 cut(s) 359
BseLI CCNNNNNNNGG 3 cut(s) 49, 143, 287
BseMII CTCAG 1 cut(s) 70
BseNI ACTGG 5 cut(s) 271, 314, 508, 673, 906
BseXI GCAGC 2 cut(s) 170, 198
BseYI CCCAGC 1 cut(s) 936
BshFI GGCC 5 cut(s) 8, 42, 632, 651, 796
BsiHKCI CYCGRG 1 cut(s) 443
BsiSI CCGG 2 cut(s) 576, 999
BslFI GGGAC 2 cut(s) 87, 569
BslI CCNNNNNNNGG 3 cut(s) 49, 143, 287
BsmAI GTCTC 1 cut(s) 835
BsmFI GGGAC 2 cut(s) 87, 569
BsnI GGCC 5 cut(s) 8, 42, 632, 651, 796
BsoBI CYCGRG 1 cut(s) 443
Bsp143I GATC 3 cut(s) 148, 782, 913
Bsp19I CCATGG 1 cut(s) 36
BspACI CCGC 1 cut(s) 339
BspANI GGCC 5 cut(s) 8, 42, 632, 651, 796
BspCNI CTCAG 1 cut(s) 69
BspLI GGNNCC 2 cut(s) 652, 986
BspMAI CTGCAG 1 cut(s) 188
BspOI GCTAGC 1 cut(s) 236
BspPI GGATC 3 cut(s) 156, 790, 921
BsrBI CCGCTC 1 cut(s) 339
BsrFI RCCGGY 1 cut(s) 998
BsrI ACTGG 5 cut(s) 271, 314, 508, 673, 906
BssAI RCCGGY 1 cut(s) 998
BssECI CCNNGG 4 cut(s) 36, 93, 112, 121
BssMI GATC 3 cut(s) 148, 782, 913
BssT1I CCWWGG 3 cut(s) 36, 93, 121
Bst2UI CCWGG 2 cut(s) 114, 372
Bst4CI ACNGT 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 135
BstC8I GCNNGC 3 cut(s) 181, 234, 649
BstDEI CTNAG 3 cut(s) 56, 376, 698
BstDSI CCRYGG 1 cut(s) 36
BstENI CCTNNNNNAGG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 359
BstHHI GCGC 1 cut(s) 998
BstKTI GATC 3 cut(s) 151, 785, 916
BstMAI GTCTC 1 cut(s) 835
BstMBI GATC 3 cut(s) 148, 782, 913
BstMWI GCNNNNNNNGC 3 cut(s) 195, 242, 808
BstNI CCWGG 2 cut(s) 114, 372
BstNSI RCATGY 1 cut(s) 479
BstSCI CCNGG 2 cut(s) 112, 370
BstSFI CTRYAG 3 cut(s) 12, 184, 945
BstV1I GCAGC 2 cut(s) 170, 198
BstX2I RGATCY 2 cut(s) 148, 913
BstYI RGATCY 2 cut(s) 148, 913
BsuRI GGCC 5 cut(s) 8, 42, 632, 651, 796
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 359
BtsIMutI CAGTG 3 cut(s) 78, 199, 264
Cac8I GCNNGC 3 cut(s) 181, 234, 649
CfoI GCGC 1 cut(s) 998
Cfr10I RCCGGY 1 cut(s) 998
Cfr13I GGNCC 6 cut(s) 40, 97, 125, 341, 650, 794
CviAII CATG 3 cut(s) 37, 476, 877
DdeI CTNAG 3 cut(s) 56, 376, 698
DpnI GATC 3 cut(s) 150, 784, 915
DpnII GATC 3 cut(s) 148, 782, 913
DrdI GACNNNNNNGTC 1 cut(s) 123
DseDI GACNNNNNNGTC 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 630
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco130I CCWWGG 3 cut(s) 36, 93, 121
Eco47I GGWCC 3 cut(s) 97, 125, 341
Eco57I CTGAAG 2 cut(s) 175, 744
Eco88I CYCGRG 1 cut(s) 443
EcoNI CCTNNNNNAGG 1 cut(s) 285
EcoO109I RGGNCCY 3 cut(s) 125, 650, 794
EcoRI GAATTC 1 cut(s) 676
EcoRII CCWGG 2 cut(s) 112, 370
EcoT14I CCWWGG 3 cut(s) 36, 93, 121
EcoT22I ATGCAT 1 cut(s) 970
ErhI CCWWGG 3 cut(s) 36, 93, 121
FaeI CATG 3 cut(s) 40, 479, 880
FaiI YATR 9 cut(s) 38, 47, 275, 477, 690, 773, 878, 947, 994
FalI AAGNNNNNCTT 4 cut(s) 114, 146, 717, 749
FaqI GGGAC 2 cut(s) 87, 569
FatI CATG 3 cut(s) 36, 475, 876
FblI GTMKAC 2 cut(s) 693, 895
Fnu4HI GCNGC 2 cut(s) 184, 187
FokI GGATG 1 cut(s) 346
Fsp4HI GCNGC 2 cut(s) 184, 187
FspBI CTAG 2 cut(s) 176, 233
GlaI GCGC 1 cut(s) 997
GluI GCNGC 2 cut(s) 184, 187
GsaI CCCAGC 1 cut(s) 940
GsuI CTGGAG 3 cut(s) 354, 902, 923
HaeIII GGCC 5 cut(s) 8, 42, 632, 651, 796
HapII CCGG 2 cut(s) 576, 999
HhaI GCGC 1 cut(s) 998
Hin1II CATG 3 cut(s) 40, 479, 880
Hin6I GCGC 1 cut(s) 996
HinP1I GCGC 1 cut(s) 996
HindIII AAGCTT 1 cut(s) 809
HinfI GANTC 2 cut(s) 75, 117
HpaII CCGG 2 cut(s) 576, 999
HphI GGTGA 1 cut(s) 751
Hpy166II GTNNAC 2 cut(s) 694, 896
Hpy188I TCNGA 5 cut(s) 249, 460, 573, 724, 930
Hpy188III TCNNGA 6 cut(s) 169, 206, 224, 542, 824, 919
Hpy8I GTNNAC 2 cut(s) 694, 896
HpyAV CCTTC 2 cut(s) 291, 830
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4V TGCA 3 cut(s) 186, 869, 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 242, 808
HpyF3I CTNAG 3 cut(s) 56, 376, 698
Hsp92II CATG 3 cut(s) 40, 479, 880
HspAI GCGC 1 cut(s) 996
Kzo9I GATC 3 cut(s) 148, 782, 913
LmnI GCTCC 3 cut(s) 461, 733, 904
Lsp1109I GCAGC 2 cut(s) 170, 198
LweI GCATC 1 cut(s) 955
MaeI CTAG 2 cut(s) 176, 233
MaeIII GTNAC 2 cut(s) 480, 701
MalI GATC 3 cut(s) 150, 784, 915
MbiI CCGCTC 1 cut(s) 339
MboI GATC 3 cut(s) 148, 782, 913
MboII GAAGA 3 cut(s) 122, 962, 965
MfeI CAATTG 1 cut(s) 332
MflI RGATCY 2 cut(s) 148, 913
MlsI TGGCCA 1 cut(s) 632
MluNI TGGCCA 1 cut(s) 632
MlyI GAGTC 2 cut(s) 69, 111
MnlI CCTC 9 cut(s) 10, 53, 64, 138, 144, 288, 354, 392, 598
Mox20I TGGCCA 1 cut(s) 632
Mph1103I ATGCAT 1 cut(s) 970
MroXI GAANNNNTTC 2 cut(s) 676, 812
MscI TGGCCA 1 cut(s) 632
MseI TTAA 9 cut(s) 161, 389, 534, 558, 597, 665, 861, 872, 978
Msp20I TGGCCA 1 cut(s) 632
MspI CCGG 2 cut(s) 576, 999
MspR9I CCNGG 2 cut(s) 114, 372
MunI CAATTG 1 cut(s) 332
MvaI CCWGG 2 cut(s) 114, 372
MwoI GCNNNNNNNGC 3 cut(s) 195, 242, 808
NcoI CCATGG 1 cut(s) 36
NdeII GATC 3 cut(s) 148, 782, 913
NheI GCTAGC 1 cut(s) 232
NlaIII CATG 3 cut(s) 40, 479, 880
NlaIV GGNNCC 2 cut(s) 652, 986
NsiI ATGCAT 1 cut(s) 970
NspI RCATGY 1 cut(s) 479
PaeR7I CTCGAG 1 cut(s) 443
PdmI GAANNNNTTC 2 cut(s) 676, 812
PkrI GCNGC 2 cut(s) 185, 188
PleI GAGTC 2 cut(s) 69, 111
PpsI GAGTC 2 cut(s) 69, 111
PpuMI RGGWCCY 1 cut(s) 125
Psp5II RGGWCCY 1 cut(s) 125
Psp6I CCWGG 2 cut(s) 112, 370
PspFI CCCAGC 1 cut(s) 936
PspGI CCWGG 2 cut(s) 112, 370
PspN4I GGNNCC 2 cut(s) 652, 986
PspPI GGNCC 6 cut(s) 40, 97, 125, 341, 650, 794
PspPPI RGGWCCY 1 cut(s) 125
PspXI VCTCGAGB 1 cut(s) 443
PstI CTGCAG 1 cut(s) 188
PsuI RGATCY 2 cut(s) 148, 913
SaqAI TTAA 9 cut(s) 161, 389, 534, 558, 597, 665, 861, 872, 978
SatI GCNGC 2 cut(s) 184, 187
Sau3AI GATC 3 cut(s) 148, 782, 913
Sau96I GGNCC 6 cut(s) 40, 97, 125, 341, 650, 794
SchI GAGTC 2 cut(s) 69, 111
ScrFI CCNGG 2 cut(s) 114, 372
SfaNI GCATC 1 cut(s) 955
SfcI CTRYAG 3 cut(s) 12, 184, 945
Sfr274I CTCGAG 1 cut(s) 443
SinI GGWCC 3 cut(s) 97, 125, 341
SlaI CTCGAG 1 cut(s) 443
SmlI CTYRAG 2 cut(s) 443, 542
SmoI CTYRAG 2 cut(s) 443, 542
SsiI CCGC 1 cut(s) 339
SspMI CTAG 2 cut(s) 176, 233
StyD4I CCNGG 2 cut(s) 112, 370
StyI CCWWGG 3 cut(s) 36, 93, 121
TaaI ACNGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 356, 444
Tru1I TTAA 9 cut(s) 161, 389, 534, 558, 597, 665, 861, 872, 978
Tru9I TTAA 9 cut(s) 161, 389, 534, 558, 597, 665, 861, 872, 978
TscAI CASTG 3 cut(s) 85, 199, 271
TseI GCWGC 2 cut(s) 183, 186
TspDTI ATGAA 2 cut(s) 633, 689
TspRI CASTG 3 cut(s) 85, 199, 271
VpaK11BI GGWCC 3 cut(s) 97, 125, 341
XagI CCTNNNNNAGG 1 cut(s) 285
XapI RAATTY 3 cut(s) 625, 676, 776
XceI RCATGY 1 cut(s) 479
XcmI CCANNNNNNNNNTGG 2 cut(s) 640, 769
XhoI CTCGAG 1 cut(s) 443
XmiI GTMKAC 2 cut(s) 693, 895
XmnI GAANNNNTTC 2 cut(s) 676, 812
XspI CTAG 2 cut(s) 176, 233
Zsp2I ATGCAT 1 cut(s) 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.