Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004586

Physical Location & Seq

Genomic Coordinates Forward (+)

7403085 .. 7405842

Gene Structure 2758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G007960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGCAACCATGAGGTTGCTGCTCTTTTTTGCTCTATATTCTGCAGGCATTCATGTGATCTCCTCACTTACGGACCCCAATGACGCTTCTGTGCTCCATGCCTTGAAAGTGTCCTGGAAAAACACGCCACCGAGCTGGGATAATTCTTCTGATCCCTGTGGTTTTCCATGGGAAGGAGTCAGCTGCAGCGGTGCAAGGGTGACTGAATTGGGATTATCAACCATGGGCCTCATAGGGGAACTCAGTAGCTACATTGAGGGACTCACTGAACTAAACTCCTTGGACCTGTCATTCAACCCTGGACTCCAAGGTCCTCTTCCTCCACAGTTAGGGGATCTCCCAAAGTTAAATATCCTGATCCTAGCTGGCTGCAGCTTCAGTGGCAACATTCCAGATGAGTTGGGAAATCTTGAACAGCTAGCGTTCTTGGCTCTGAATACAAATTACTTCACTGGTAGCATACCTCCTTCTTTAGGTAAGCTCTCCAACCTCTACTGGCTTGATGTGGCAGACAATCAATTGAGCGGACCTCTACCAATTTCGACATCCACTTCTCCAGGCTTAGACCTCTTGTTAAACGCCAAACATTTCCATTTGAACAAGAACCAGCTTTCCGGTTCTATTCCACTCGAGCTTTTCAGCTCCGAGATGATATTGATACATGCGTTACTTGACGAAAACAATTTTACTGGGAGTATTCCAATGACATTAGGACTTGTTAAAACTCTTGAGATGGTTCGGCTTAATAGAAATGCTCTGACCGGAAGTGTCCCCTCAAACCTTAACAACCTTACAAATGTCAATGAACTAAATTTGGCCAACAACAAATTGGCAGGCCCCTTGCCTGACTTGACTGGAATGAATTCTCTCAATTATGTAGACCTTAGTAACAACTCATTTGACCCATCTGAAGCTCCACTTTGGTTCTCAACCTTACCCACACTCACCACTCTGGTTGTGGAATTTGGATCACTTCAAGGGCCTGTGCCAGAGAAGCTTTTCAGCCTTCCAGAATTACAGCAAGTGAGACTGAAATACAATACGTTTAATGGTACATTAAACATGGGCGATAGCATCAGTCTACAACTGGAGCTTGTGGATCTCCAGAACAATCAGATTTCCCAGCTCACTATAGAAGAAGAATACAAAGATGCATTGATACTTAAAGGGAACCCGATATGCTCCGGTAGTCTATCAAACACTACTTGGTGTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase_Tyr

Protein Analysis

405

Amino Acids

43.82

Weight (kDa)

4.44

Isoelectric Point (pI)

31.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	26 - 63	9e-06	Leucine rich repeat N-terminal domain
LRR_14	PF23598	129 - 357	1.6e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49750
fragaria_vesca	FvH4_6g08970 FvH4_6g09001
prunus_persica	Prupe.6G301700_v2.0.a1
rosa_laevigata	RLG00000025099
rosa_multiflora	Rmu_co8402051.1_g000001 Rmu_sc0002435.1_g000001 Rmu_sc0010702.1_g000004 Rmu_sc0022643.1_g000002 Rmu_sc0035588.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241190 Rroxscaffold_6G00420360 Rroxscaffold_6G00420370
rosa_rugosa	Rorug03G0034500 Rorug03G0034500 Rorug03G0034600 Rorug03G0034700 Rorug03G0034800
rosa_samantha	Rh2AG320500 Rh3AG092500 Rh3AG092600 Rh3BG095700 Rh3CG096500 Rh3CG096700 Rh3DG096200 Rh3DG096300 Rh4AG031900
rosa_wichuraiana	Rw3G007950 Rw3G007960 Rw6G021920 Rw7G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	309
AccBSI	CCGCTC	1 cut(s)	525
AccI	GTMKAC	2 cut(s)	879, 1081
AciI	CCGC	2 cut(s)	189, 525
AclWI	GGATC	5 cut(s)	146, 342, 352, 976, 1107
AcoI	YGGCCR	1 cut(s)	816
AcsI	RAATTY	3 cut(s)	811, 862, 962
AcuI	CTGAAG	2 cut(s)	361, 930
AfaI	GTAC	1 cut(s)	1054
AfiI	CCNNNNNNNGG	4 cut(s)	173, 235, 329, 473
AgsI	TTSAA	5 cut(s)	106, 295, 413, 598, 977
AjnI	CCWGG	3 cut(s)	113, 298, 556
AjuI	GAANNNNNNNTTGG	2 cut(s)	300, 332
AloI	GAACNNNNNNTCC	2 cut(s)	596, 628
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	1021
AlwI	GGATC	5 cut(s)	146, 342, 352, 976, 1107
Ama87I	CYCGRG	1 cut(s)	629
AoxI	GGCC	4 cut(s)	226, 816, 835, 980
ApeKI	GCWGC	5 cut(s)	19, 183, 186, 369, 372
ApoI	RAATTY	3 cut(s)	811, 862, 962
Asp700I	GAANNNNTTC	2 cut(s)	862, 998
AspS9I	GGNCC	7 cut(s)	73, 226, 283, 311, 527, 836, 980
AsuHPI	GGTGA	2 cut(s)	211, 937
AsuNHI	GCTAGC	1 cut(s)	418
AvaI	CYCGRG	1 cut(s)	629
AvaII	GGWCC	4 cut(s)	73, 283, 311, 527
BaeI	ACNNNNGTAYC	2 cut(s)	650, 683
BalI	TGGCCA	1 cut(s)	818
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	5 cut(s)	6, 170, 198, 356, 384
BccI	CCATC	2 cut(s)	727, 913
BciT130I	CCWGG	3 cut(s)	115, 300, 558
BcoDI	GTCTC	1 cut(s)	1021
BfaI	CTAG	2 cut(s)	362, 419
BfmI	CTRYAG	4 cut(s)	42, 184, 370, 1131
BisI	GCNGC	5 cut(s)	20, 184, 187, 370, 373
BlsI	GCNGC	5 cut(s)	21, 185, 188, 371, 374
Bme1390I	CCNGG	3 cut(s)	115, 300, 558
Bme18I	GGWCC	4 cut(s)	73, 283, 311, 527
BmeT110I	CYCGRG	1 cut(s)	629
BmgT120I	GGNCC	7 cut(s)	73, 226, 283, 311, 527, 836, 980
BmiI	GGNNCC	3 cut(s)	75, 838, 1172
BmrFI	CCNGG	3 cut(s)	115, 300, 558
BmrI	ACTGGG	1 cut(s)	699
BmsI	GCATC	2 cut(s)	1083, 1141
BmtI	GCTAGC	1 cut(s)	422
BmuI	ACTGGG	1 cut(s)	699
BplI	GAGNNNNNCTC	2 cut(s)	514, 546
BpmI	CTGGAG	3 cut(s)	540, 1088, 1109
BpuEI	CTTGAG	1 cut(s)	749
BsaJI	CCNNGG	5 cut(s)	167, 222, 279, 298, 307
BsaWI	WCCGGW	3 cut(s)	614, 761, 1184
Bsc4I	CCNNNNNNNGG	4 cut(s)	173, 235, 329, 473
Bse1I	ACTGG	5 cut(s)	457, 500, 694, 859, 1092
BseBI	CCWGG	3 cut(s)	115, 300, 558
BseDI	CCNNGG	5 cut(s)	167, 222, 279, 298, 307
BseGI	GGATG	1 cut(s)	545
BseLI	CCNNNNNNNGG	4 cut(s)	173, 235, 329, 473
BseMII	CTCAG	1 cut(s)	256
BseNI	ACTGG	5 cut(s)	457, 500, 694, 859, 1092
BseRI	GAGGAG	1 cut(s)	52
BseXI	GCAGC	5 cut(s)	6, 170, 198, 356, 384
BseYI	CCCAGC	2 cut(s)	135, 1122
BshFI	GGCC	4 cut(s)	228, 818, 837, 982
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	629
BsiSI	CCGG	3 cut(s)	615, 762, 1185
BslFI	GGGAC	2 cut(s)	273, 755
BslI	CCNNNNNNNGG	4 cut(s)	173, 235, 329, 473
BsmAI	GTCTC	1 cut(s)	1021
BsmFI	GGGAC	2 cut(s)	273, 755
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	4 cut(s)	228, 818, 837, 982
BsoBI	CYCGRG	1 cut(s)	629
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	6 cut(s)	57, 151, 334, 357, 968, 1099
Bsp19I	CCATGG	2 cut(s)	167, 222
BspACI	CCGC	2 cut(s)	189, 525
BspANI	GGCC	4 cut(s)	228, 818, 837, 982
BspCNI	CTCAG	1 cut(s)	255
BspLI	GGNNCC	3 cut(s)	75, 838, 1172
BspMAI	CTGCAG	3 cut(s)	46, 188, 374
BspOI	GCTAGC	1 cut(s)	422
BspPI	GGATC	5 cut(s)	146, 342, 352, 976, 1107
BsrBI	CCGCTC	1 cut(s)	525
BsrI	ACTGG	5 cut(s)	457, 500, 694, 859, 1092
BssECI	CCNNGG	5 cut(s)	167, 222, 279, 298, 307
BssMI	GATC	6 cut(s)	57, 151, 334, 357, 968, 1099
BssT1I	CCWWGG	4 cut(s)	167, 222, 279, 307
Bst2UI	CCWGG	3 cut(s)	115, 300, 558
Bst4CI	ACNGT	1 cut(s)	327
Bst6I	CTCTTC	1 cut(s)	321
BstC8I	GCNNGC	4 cut(s)	46, 367, 420, 835
BstDEI	CTNAG	3 cut(s)	242, 562, 884
BstDSI	CCRYGG	2 cut(s)	167, 222
BstENI	CCTNNNNNAGG	1 cut(s)	471
BstF5I	GGATG	1 cut(s)	545
BstKTI	GATC	6 cut(s)	60, 154, 337, 360, 971, 1102
BstMAI	GTCTC	1 cut(s)	1021
BstMBI	GATC	6 cut(s)	57, 151, 334, 357, 968, 1099
BstMWI	GCNNNNNNNGC	3 cut(s)	381, 428, 994
BstNI	CCWGG	3 cut(s)	115, 300, 558
BstNSI	RCATGY	1 cut(s)	665
BstSCI	CCNGG	3 cut(s)	113, 298, 556
BstSFI	CTRYAG	4 cut(s)	42, 184, 370, 1131
BstV1I	GCAGC	5 cut(s)	6, 170, 198, 356, 384
BstX2I	RGATCY	2 cut(s)	334, 1099
BstXI	CCANNNNNNTGG	1 cut(s)	135
BstYI	RGATCY	2 cut(s)	334, 1099
BsuRI	GGCC	4 cut(s)	228, 818, 837, 982
BtgI	CCRYGG	2 cut(s)	167, 222
BtsCI	GGATG	1 cut(s)	545
BtsIMutI	CAGTG	3 cut(s)	264, 385, 450
Cac8I	GCNNGC	4 cut(s)	46, 367, 420, 835
Cfr13I	GGNCC	7 cut(s)	73, 226, 283, 311, 527, 836, 980
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	1053
CspCI	CAANNNNNGTGG	2 cut(s)	937, 972
CviAII	CATG	7 cut(s)	10, 53, 98, 168, 223, 662, 1063
CviQI	GTAC	1 cut(s)	1053
DdeI	CTNAG	3 cut(s)	242, 562, 884
DpnI	GATC	6 cut(s)	59, 153, 336, 359, 970, 1101
DpnII	GATC	6 cut(s)	57, 151, 334, 357, 968, 1099
DrdI	GACNNNNNNGTC	1 cut(s)	309
DseDI	GACNNNNNNGTC	1 cut(s)	309
EaeI	YGGCCR	1 cut(s)	816
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco130I	CCWWGG	4 cut(s)	167, 222, 279, 307
Eco47I	GGWCC	4 cut(s)	73, 283, 311, 527
Eco57I	CTGAAG	2 cut(s)	361, 930
Eco88I	CYCGRG	1 cut(s)	629
EcoNI	CCTNNNNNAGG	1 cut(s)	471
EcoO109I	RGGNCCY	3 cut(s)	311, 836, 980
EcoRI	GAATTC	1 cut(s)	862
EcoRII	CCWGG	3 cut(s)	113, 298, 556
EcoT14I	CCWWGG	4 cut(s)	167, 222, 279, 307
EcoT22I	ATGCAT	1 cut(s)	1156
ErhI	CCWWGG	4 cut(s)	167, 222, 279, 307
FaeI	CATG	7 cut(s)	13, 56, 101, 171, 226, 665, 1066
FalI	AAGNNNNNCTT	4 cut(s)	300, 332, 903, 935
FaqI	GGGAC	2 cut(s)	273, 755
FatI	CATG	7 cut(s)	9, 52, 97, 167, 222, 661, 1062
FblI	GTMKAC	2 cut(s)	879, 1081
Fnu4HI	GCNGC	5 cut(s)	20, 184, 187, 370, 373
FokI	GGATG	1 cut(s)	532
Fsp4HI	GCNGC	5 cut(s)	20, 184, 187, 370, 373
FspBI	CTAG	2 cut(s)	362, 419
GluI	GCNGC	5 cut(s)	20, 184, 187, 370, 373
GsaI	CCCAGC	2 cut(s)	139, 1126
GsuI	CTGGAG	3 cut(s)	540, 1088, 1109
HaeIII	GGCC	4 cut(s)	228, 818, 837, 982
HapII	CCGG	3 cut(s)	615, 762, 1185
HgaI	GACGC	1 cut(s)	92
Hin1II	CATG	7 cut(s)	13, 56, 101, 171, 226, 665, 1066
HindIII	AAGCTT	1 cut(s)	995
HinfI	GANTC	3 cut(s)	177, 261, 303
HpaII	CCGG	3 cut(s)	615, 762, 1185
HphI	GGTGA	2 cut(s)	211, 937
Hpy166II	GTNNAC	2 cut(s)	880, 1082
Hpy188I	TCNGA	6 cut(s)	151, 435, 646, 759, 910, 1116
Hpy188III	TCNNGA	6 cut(s)	355, 392, 410, 728, 1010, 1105
Hpy8I	GTNNAC	2 cut(s)	880, 1082
HpyAV	CCTTC	3 cut(s)	167, 477, 1016
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4IV	ACGT	1 cut(s)	1043
HpyCH4V	TGCA	5 cut(s)	44, 186, 194, 372, 1154
HpyF10VI	GCNNNNNNNGC	3 cut(s)	381, 428, 994
HpyF3I	CTNAG	3 cut(s)	242, 562, 884
HpySE526I	ACGT	1 cut(s)	1043
Hsp92II	CATG	7 cut(s)	13, 56, 101, 171, 226, 665, 1066
Kzo9I	GATC	6 cut(s)	57, 151, 334, 357, 968, 1099
LmnI	GCTCC	5 cut(s)	99, 647, 919, 1090, 1187
Lsp1109I	GCAGC	5 cut(s)	6, 170, 198, 356, 384
LweI	GCATC	2 cut(s)	1083, 1141
MaeI	CTAG	2 cut(s)	362, 419
MaeII	ACGT	1 cut(s)	1043
MaeIII	GTNAC	3 cut(s)	199, 666, 887
MalI	GATC	6 cut(s)	59, 153, 336, 359, 970, 1101
MbiI	CCGCTC	1 cut(s)	525
MboI	GATC	6 cut(s)	57, 151, 334, 357, 968, 1099
MboII	GAAGA	4 cut(s)	138, 308, 1148, 1151
MfeI	CAATTG	1 cut(s)	518
MflI	RGATCY	2 cut(s)	334, 1099
MhlI	GDGCHC	1 cut(s)	96
MlsI	TGGCCA	1 cut(s)	818
MluNI	TGGCCA	1 cut(s)	818
MlyI	GAGTC	3 cut(s)	186, 255, 297
MmeI	TCCRAC	1 cut(s)	510
Mox20I	TGGCCA	1 cut(s)	818
Mph1103I	ATGCAT	1 cut(s)	1156
MroXI	GAANNNNTTC	2 cut(s)	862, 998
MscI	TGGCCA	1 cut(s)	818
MseI	TTAA	8 cut(s)	347, 575, 720, 744, 783, 1047, 1058, 1164
MslI	CAYNNNNRTG	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	818
MspA1I	CMGCKG	2 cut(s)	183, 189
MspI	CCGG	3 cut(s)	615, 762, 1185
MspR9I	CCNGG	3 cut(s)	115, 300, 558
MunI	CAATTG	1 cut(s)	518
Mva1269I	GAATGC	1 cut(s)	48
MvaI	CCWGG	3 cut(s)	115, 300, 558
MwoI	GCNNNNNNNGC	3 cut(s)	381, 428, 994
NcoI	CCATGG	2 cut(s)	167, 222
NdeII	GATC	6 cut(s)	57, 151, 334, 357, 968, 1099
NheI	GCTAGC	1 cut(s)	418
NlaIII	CATG	7 cut(s)	13, 56, 101, 171, 226, 665, 1066
NlaIV	GGNNCC	3 cut(s)	75, 838, 1172
NmuCI	GTSAC	1 cut(s)	199
NsiI	ATGCAT	1 cut(s)	1156
NspI	RCATGY	1 cut(s)	665
PaeR7I	CTCGAG	1 cut(s)	629
PctI	GAATGC	1 cut(s)	48
PdmI	GAANNNNTTC	2 cut(s)	862, 998
PfoI	TCCNGGA	1 cut(s)	113
PkrI	GCNGC	5 cut(s)	21, 185, 188, 371, 374
PleI	GAGTC	3 cut(s)	185, 255, 297
PpsI	GAGTC	3 cut(s)	185, 255, 297
PpuMI	RGGWCCY	1 cut(s)	311
Psp5II	RGGWCCY	1 cut(s)	311
Psp6I	CCWGG	3 cut(s)	113, 298, 556
PspFI	CCCAGC	2 cut(s)	135, 1122
PspGI	CCWGG	3 cut(s)	113, 298, 556
PspN4I	GGNNCC	3 cut(s)	75, 838, 1172
PspPI	GGNCC	7 cut(s)	73, 226, 283, 311, 527, 836, 980
PspPPI	RGGWCCY	1 cut(s)	311
PspXI	VCTCGAGB	1 cut(s)	629
PstI	CTGCAG	3 cut(s)	46, 188, 374
PsuI	RGATCY	2 cut(s)	334, 1099
PvuII	CAGCTG	1 cut(s)	183
RsaI	GTAC	1 cut(s)	1054
RsaNI	GTAC	1 cut(s)	1053
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	8 cut(s)	347, 575, 720, 744, 783, 1047, 1058, 1164
SatI	GCNGC	5 cut(s)	20, 184, 187, 370, 373
Sau3AI	GATC	6 cut(s)	57, 151, 334, 357, 968, 1099
Sau96I	GGNCC	7 cut(s)	73, 226, 283, 311, 527, 836, 980
SchI	GAGTC	3 cut(s)	186, 255, 297
ScrFI	CCNGG	3 cut(s)	115, 300, 558
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	2 cut(s)	1083, 1141
SfcI	CTRYAG	4 cut(s)	42, 184, 370, 1131
Sfr274I	CTCGAG	1 cut(s)	629
SinI	GGWCC	4 cut(s)	73, 283, 311, 527
SlaI	CTCGAG	1 cut(s)	629
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	629, 728
SmoI	CTYRAG	2 cut(s)	629, 728
SsiI	CCGC	2 cut(s)	189, 525
SspMI	CTAG	2 cut(s)	362, 419
StyD4I	CCNGG	3 cut(s)	113, 298, 556
StyI	CCWWGG	4 cut(s)	167, 222, 279, 307
TaaI	ACNGT	1 cut(s)	327
TaiI	ACGT	1 cut(s)	1046
TaqI	TCGA	2 cut(s)	542, 630
Tru1I	TTAA	8 cut(s)	347, 575, 720, 744, 783, 1047, 1058, 1164
Tru9I	TTAA	8 cut(s)	347, 575, 720, 744, 783, 1047, 1058, 1164
TscAI	CASTG	3 cut(s)	271, 385, 457
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	5 cut(s)	19, 183, 186, 369, 372
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	3 cut(s)	41, 819, 875
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	3 cut(s)	271, 385, 457
VpaK11BI	GGWCC	4 cut(s)	73, 283, 311, 527
XagI	CCTNNNNNAGG	1 cut(s)	471
XapI	RAATTY	3 cut(s)	811, 862, 962
XceI	RCATGY	1 cut(s)	665
XcmI	CCANNNNNNNNNTGG	2 cut(s)	826, 955
XhoI	CTCGAG	1 cut(s)	629
XmiI	GTMKAC	2 cut(s)	879, 1081
XmnI	GAANNNNTTC	2 cut(s)	862, 998
XspI	CTAG	2 cut(s)	362, 419
Zsp2I	ATGCAT	1 cut(s)	1156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.