Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004586

Physical Location & Seq

Genomic Coordinates Forward (+)

45941530 .. 45944300

Gene Structure 2771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG320500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGCGGAGTCATTCGTTTCCAAAGGGTGTCATGCTGAGGAATTCCGCCATGTTCACATCCCACCCGTTAGTGCATTGTATACACATGTCCGATAGGTTCGAGACATTATCTGAGCTACAGATTCTGAATCTGGCTTTCAATGAGGACCTGAAGGGACAACTTCAAGCAACAATTGGAAACTTGACCAAACTAGAAACCTTAATCCTGGATGGTTGCAGATTCTCTGGTCCTATTCCAGCTACAATAGGATCTTTAAAGCAACTTTCTTATCTATCTCTGAAAAACAATAGATTTAGTGGTCCAATTCCACCTTCCATTGGCAATCTAGCCAATCTTGTCTTTCTGGACCTATCGGACAACATGTTTGGGGATTCCATTCCACTCTCAAATGGGACTGCACCTGGTCTTGATATGTTAAATAAAACAAAGCACTTTCATTTTTCAAATAACCAGCTCTCGGGCAGCATTCCACCTCAACTGTTCAGCTCAAATATGTCTCTGATACATTTGATTTTTGACAGAAATAATTTTACTGGCAGCATCCCTTCCACACTTGGACTTGTGAAAACTCTGGCGGCAGTACGCCTTGATAGAAATTCATTAAGTGGGTCTGTACCTGAGAGCCTCAGAAATCTTACAAATGTGTCTGAACTGCACTTGTCCAACAATAAGCTGACTGGCCCAGTGCCCAACCTTACTCCCATGGATTCCCTCAACTATGTGGATATGAGCAATAATACTTTTGATGCGTCAGATATTCCTAATTGGTTTTCAACCTTGAAGTTCTTGACAACATTAATGATGGAAAGCACAGGACTTCAAGGACAAGTCCCTCAAGCCCTTTTCAGCCTTCAAAATTTGGAGACAGTGATACTGAAGAACAACAGTCTCAATGGTACATTGGATATTGGAGCAAATTACGGCAACCAATTGAACCTAATTGATCTGCAGAAGAACAACATTGCTGAACTTGCACCAATTGATGAGGGATCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

332

Amino Acids

36.27

Weight (kDa)

5.88

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	60 - 313	4e-13	Leucine-rich repeat region
LRR_8	PF13855	63 - 121	1.8e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49750
fragaria_vesca	FvH4_6g08970 FvH4_6g09001
prunus_persica	Prupe.6G301700_v2.0.a1
rosa_laevigata	RLG00000025099
rosa_multiflora	Rmu_co8402051.1_g000001 Rmu_sc0002435.1_g000001 Rmu_sc0010702.1_g000004 Rmu_sc0022643.1_g000002 Rmu_sc0035588.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241190 Rroxscaffold_6G00420360 Rroxscaffold_6G00420370
rosa_rugosa	Rorug03G0034500 Rorug03G0034500 Rorug03G0034600 Rorug03G0034700 Rorug03G0034800
rosa_samantha	Rh2AG320500 Rh3AG092500 Rh3AG092600 Rh3BG095700 Rh3CG096500 Rh3CG096700 Rh3DG096200 Rh3DG096300 Rh4AG031900
rosa_wichuraiana	Rw3G007950 Rw3G007960 Rw6G021920 Rw7G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	79
AciI	CCGC	3 cut(s)	4, 45, 575
AclWI	GGATC	3 cut(s)	256, 984, 997
AcsI	RAATTY	3 cut(s)	40, 595, 856
AcuI	CTGAAG	2 cut(s)	170, 896
AfaI	GTAC	3 cut(s)	582, 615, 898
AfiI	CCNNNNNNNGG	2 cut(s)	317, 457
AflIII	ACRYGT	2 cut(s)	84, 360
AgsI	TTSAA	8 cut(s)	139, 164, 444, 774, 781, 821, 854, 934
AjnI	CCWGG	2 cut(s)	204, 400
AjuI	GAANNNNNNNTTGG	2 cut(s)	295, 327
AluBI	AGCT	5 cut(s)	115, 239, 454, 486, 673
AluI	AGCT	5 cut(s)	115, 239, 454, 486, 673
Alw26I	GTCTC	4 cut(s)	95, 501, 857, 893
AlwI	GGATC	3 cut(s)	256, 984, 997
AlwNI	CAGNNNCTG	1 cut(s)	124
Ama87I	CYCGRG	1 cut(s)	457
AoxI	GGCC	1 cut(s)	679
ApeKI	GCWGC	2 cut(s)	462, 537
ApoI	RAATTY	3 cut(s)	40, 595, 856
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AseI	ATTAAT	1 cut(s)	797
AspS9I	GGNCC	5 cut(s)	145, 227, 299, 346, 680
AvaI	CYCGRG	1 cut(s)	457
AvaII	GGWCC	4 cut(s)	145, 227, 299, 346
BaeGI	GKGCMC	1 cut(s)	690
BamHI	GGATCC	1 cut(s)	989
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	474, 549
BccI	CCATC	2 cut(s)	203, 796
BceAI	ACGGC	1 cut(s)	937
BciT130I	CCWGG	2 cut(s)	206, 402
BcoDI	GTCTC	4 cut(s)	95, 501, 857, 893
BfaI	CTAG	2 cut(s)	191, 326
BfmI	CTRYAG	2 cut(s)	116, 947
BisI	GCNGC	3 cut(s)	463, 538, 576
BlsI	GCNGC	3 cut(s)	464, 539, 577
Bme1390I	CCNGG	2 cut(s)	206, 402
Bme18I	GGWCC	4 cut(s)	145, 227, 299, 346
BmeT110I	CYCGRG	1 cut(s)	457
BmgT120I	GGNCC	5 cut(s)	145, 227, 299, 346, 680
BmiI	GGNNCC	1 cut(s)	991
BmrFI	CCNGG	2 cut(s)	206, 402
BmrI	ACTGGG	1 cut(s)	677
BmsI	GCATC	2 cut(s)	549, 736
BmuI	ACTGGG	1 cut(s)	677
Bpu10I	CCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	819
BsaJI	CCNNGG	1 cut(s)	702
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 457
Bse1I	ACTGG	3 cut(s)	538, 682, 683
Bse3DI	GCAATG	1 cut(s)	960
BseBI	CCWGG	2 cut(s)	206, 402
BseDI	CCNNGG	1 cut(s)	702
BseGI	GGATG	3 cut(s)	56, 214, 540
BseLI	CCNNNNNNNGG	2 cut(s)	317, 457
BseMI	GCAATG	1 cut(s)	960
BseMII	CTCAG	4 cut(s)	26, 102, 609, 640
BseNI	ACTGG	3 cut(s)	538, 682, 683
BseSI	GKGCMC	1 cut(s)	690
BseXI	GCAGC	2 cut(s)	474, 549
BsgI	GTGCAG	2 cut(s)	381, 638
BshFI	GGCC	1 cut(s)	681
BsiHKCI	CYCGRG	1 cut(s)	457
BslFI	GGGAC	3 cut(s)	168, 406, 815
BslI	CCNNNNNNNGG	2 cut(s)	317, 457
BsmAI	GTCTC	4 cut(s)	95, 501, 857, 893
BsmFI	GGGAC	3 cut(s)	168, 406, 815
BsmI	GAATGC	1 cut(s)	465
BsnI	GGCC	1 cut(s)	681
BsoBI	CYCGRG	1 cut(s)	457
Bsp1286I	GDGCHC	1 cut(s)	690
Bsp143I	GATC	3 cut(s)	248, 943, 989
Bsp19I	CCATGG	1 cut(s)	702
BspACI	CCGC	3 cut(s)	4, 45, 575
BspANI	GGCC	1 cut(s)	681
BspCNI	CTCAG	4 cut(s)	27, 103, 610, 639
BspLI	GGNNCC	1 cut(s)	991
BspMAI	CTGCAG	1 cut(s)	951
BspPI	GGATC	3 cut(s)	256, 984, 997
BsrDI	GCAATG	1 cut(s)	960
BsrI	ACTGG	3 cut(s)	538, 682, 683
BssECI	CCNNGG	1 cut(s)	702
BssMI	GATC	3 cut(s)	248, 943, 989
BssNAI	GTATAC	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	702
Bst1107I	GTATAC	1 cut(s)	80
Bst2UI	CCWGG	2 cut(s)	206, 402
Bst4CI	ACNGT	3 cut(s)	480, 868, 887
BstDEI	CTNAG	4 cut(s)	35, 111, 618, 626
BstDSI	CCRYGG	1 cut(s)	702
BstF5I	GGATG	3 cut(s)	56, 214, 540
BstKTI	GATC	3 cut(s)	251, 946, 992
BstMAI	GTCTC	4 cut(s)	95, 501, 857, 893
BstMBI	GATC	3 cut(s)	248, 943, 989
BstMWI	GCNNNNNNNGC	1 cut(s)	971
BstNI	CCWGG	2 cut(s)	206, 402
BstNSI	RCATGY	2 cut(s)	88, 364
BstSCI	CCNGG	2 cut(s)	204, 400
BstSFI	CTRYAG	2 cut(s)	116, 947
BstSLI	GKGCMC	1 cut(s)	690
BstV1I	GCAGC	2 cut(s)	474, 549
BstX2I	RGATCY	2 cut(s)	248, 989
BstYI	RGATCY	2 cut(s)	248, 989
BstZ17I	GTATAC	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	681
BtgI	CCRYGG	1 cut(s)	702
BtsCI	GGATG	3 cut(s)	56, 214, 540
BtsIMutI	CAGTG	2 cut(s)	690, 873
CaiI	CAGNNNCTG	1 cut(s)	124
Cfr13I	GGNCC	5 cut(s)	145, 227, 299, 346, 680
CseI	GACGC	1 cut(s)	738
CsiI	ACCWGGT	1 cut(s)	400
Csp6I	GTAC	3 cut(s)	581, 614, 897
CviAII	CATG	5 cut(s)	31, 49, 85, 361, 703
CviQI	GTAC	3 cut(s)	581, 614, 897
DdeI	CTNAG	4 cut(s)	35, 111, 618, 626
DpnI	GATC	3 cut(s)	250, 945, 991
DpnII	GATC	3 cut(s)	248, 943, 989
DraI	TTTAAA	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	702
Eco47I	GGWCC	4 cut(s)	145, 227, 299, 346
Eco57I	CTGAAG	2 cut(s)	170, 896
Eco88I	CYCGRG	1 cut(s)	457
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	2 cut(s)	204, 400
EcoT14I	CCWWGG	1 cut(s)	702
ErhI	CCWWGG	1 cut(s)	702
FaeI	CATG	5 cut(s)	34, 52, 88, 364, 706
FaqI	GGGAC	3 cut(s)	168, 406, 815
FatI	CATG	5 cut(s)	30, 48, 84, 360, 702
FblI	GTMKAC	1 cut(s)	79
Fnu4HI	GCNGC	3 cut(s)	463, 538, 576
FokI	GGATG	3 cut(s)	43, 221, 527
Fsp4HI	GCNGC	3 cut(s)	463, 538, 576
FspBI	CTAG	2 cut(s)	191, 326
GluI	GCNGC	3 cut(s)	463, 538, 576
HaeIII	GGCC	1 cut(s)	681
HgaI	GACGC	1 cut(s)	738
Hin1II	CATG	5 cut(s)	34, 52, 88, 364, 706
HinfI	GANTC	6 cut(s)	7, 121, 127, 219, 371, 707
Hpy166II	GTNNAC	2 cut(s)	54, 80
Hpy188I	TCNGA	9 cut(s)	91, 112, 126, 279, 355, 501, 629, 649, 754
Hpy188III	TCNNGA	4 cut(s)	100, 344, 407, 787
Hpy8I	GTNNAC	2 cut(s)	54, 80
HpyAV	CCTTC	4 cut(s)	145, 321, 555, 860
HpyCH4III	ACNGT	3 cut(s)	480, 868, 887
HpyCH4V	TGCA	6 cut(s)	73, 216, 398, 655, 949, 974
HpyF10VI	GCNNNNNNNGC	1 cut(s)	971
HpyF3I	CTNAG	4 cut(s)	35, 111, 618, 626
Hsp92II	CATG	5 cut(s)	34, 52, 88, 364, 706
Kzo9I	GATC	3 cut(s)	248, 943, 989
LmnI	GCTCC	1 cut(s)	911
Lsp1109I	GCAGC	2 cut(s)	474, 549
LweI	GCATC	2 cut(s)	549, 736
MabI	ACCWGGT	1 cut(s)	400
MaeI	CTAG	2 cut(s)	191, 326
MalI	GATC	3 cut(s)	250, 945, 991
MboI	GATC	3 cut(s)	248, 943, 989
MboII	GAAGA	2 cut(s)	889, 964
MfeI	CAATTG	3 cut(s)	171, 929, 978
MflI	RGATCY	2 cut(s)	248, 989
MhlI	GDGCHC	1 cut(s)	690
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	687
MnlI	CCTC	7 cut(s)	30, 136, 483, 635, 722, 843, 979
MseI	TTAA	5 cut(s)	200, 254, 416, 602, 797
MspR9I	CCNGG	2 cut(s)	206, 402
MunI	CAATTG	3 cut(s)	171, 929, 978
Mva1269I	GAATGC	1 cut(s)	465
MvaI	CCWGG	2 cut(s)	206, 402
MwoI	GCNNNNNNNGC	1 cut(s)	971
NcoI	CCATGG	1 cut(s)	702
NdeII	GATC	3 cut(s)	248, 943, 989
NlaIII	CATG	5 cut(s)	34, 52, 88, 364, 706
NlaIV	GGNNCC	1 cut(s)	991
NspI	RCATGY	2 cut(s)	88, 364
PciI	ACATGT	2 cut(s)	84, 360
PctI	GAATGC	1 cut(s)	465
PfeI	GAWTC	5 cut(s)	121, 127, 219, 371, 707
PfoI	TCCNGGA	1 cut(s)	204
PkrI	GCNGC	3 cut(s)	464, 539, 577
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PpuMI	RGGWCCY	1 cut(s)	145
PscI	ACATGT	2 cut(s)	84, 360
PshBI	ATTAAT	1 cut(s)	797
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	2 cut(s)	204, 400
PspGI	CCWGG	2 cut(s)	204, 400
PspN4I	GGNNCC	1 cut(s)	991
PspPI	GGNCC	5 cut(s)	145, 227, 299, 346, 680
PspPPI	RGGWCCY	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	951
PstNI	CAGNNNCTG	1 cut(s)	124
PsuI	RGATCY	2 cut(s)	248, 989
RsaI	GTAC	3 cut(s)	582, 615, 898
RsaNI	GTAC	3 cut(s)	581, 614, 897
SaqAI	TTAA	5 cut(s)	200, 254, 416, 602, 797
SatI	GCNGC	3 cut(s)	463, 538, 576
Sau3AI	GATC	3 cut(s)	248, 943, 989
Sau96I	GGNCC	5 cut(s)	145, 227, 299, 346, 680
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	206, 402
SduI	GDGCHC	1 cut(s)	690
SexAI	ACCWGGT	1 cut(s)	400
SfaNI	GCATC	2 cut(s)	549, 736
SfcI	CTRYAG	2 cut(s)	116, 947
SinI	GGWCC	4 cut(s)	145, 227, 299, 346
SmlI	CTYRAG	1 cut(s)	834
SmoI	CTYRAG	1 cut(s)	834
SsiI	CCGC	3 cut(s)	4, 45, 575
SspMI	CTAG	2 cut(s)	191, 326
StyD4I	CCNGG	2 cut(s)	204, 400
StyI	CCWWGG	1 cut(s)	702
TaaI	ACNGT	3 cut(s)	480, 868, 887
TaqI	TCGA	1 cut(s)	99
TauI	GCSGC	1 cut(s)	578
TfiI	GAWTC	5 cut(s)	121, 127, 219, 371, 707
Tru1I	TTAA	5 cut(s)	200, 254, 416, 602, 797
Tru9I	TTAA	5 cut(s)	200, 254, 416, 602, 797
TscAI	CASTG	2 cut(s)	690, 873
TseI	GCWGC	2 cut(s)	462, 537
TspDTI	ATGAA	2 cut(s)	425, 588
TspRI	CASTG	2 cut(s)	690, 873
VpaK11BI	GGWCC	4 cut(s)	145, 227, 299, 346
VspI	ATTAAT	1 cut(s)	797
XapI	RAATTY	3 cut(s)	40, 595, 856
XceI	RCATGY	2 cut(s)	88, 364
XmiI	GTMKAC	1 cut(s)	79
XspI	CTAG	2 cut(s)	191, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.