Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003288

Physical Location & Seq

Genomic Coordinates Forward (+)

21479382 .. 21481256

Gene Structure 1875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCGATGCTTTTTCGACCTCCTCCTTCACAATGTAGAAGCTTCTCTCCTTTTGTCTTCAACTACAGCTCCAGAGAAGTTTCTTCGTCGTCTCGTCTCTCCTTGAAAACCTCCGGCGACGAAGAAAACTGGGTTTCACGTTTCCGGTCGAAATCTCTCAGTTTGGTGTTCTCTGGAGCTCTTGCTCTCGGTTTATCTCTATCAGGCGTGGGGTTTGCAGATGCAAAAGTTGGTGTTAACAAACCAGAATTGCTTCCTAAAGAGTTCACTTCTGTTATAGATGTTGCTGATTTCCTCTCTAATGGTCAGGAGAAGAGAATTGCTCAAGAAATCGCTAATCTTGAGAAAGATACAGGATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTACCCCTGGACTAGCAATCAAAGATTTCTGGCAGGTGGATGATAGCACAATTGTGTTTGTCGCTGACCCGACTTTTGGGAACATATTGAATTTCAATGTTGGAGCTACGGTTGATTTAGACATACCTCGTAGTTTCTGGAGTCGACTGGCTGGGAAATACGGCAATATGTTTTACTGGAAAGAGAAGGGAGAAGATGCATCTATTGAAGCTGCAGTGATGGCGATATCAAGTTGCTTACGAGAACCAGTTGGTCGAAACAACTGTGCAGAGATCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0031977 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044436 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPM_phosphatase

Protein Analysis

223

Amino Acids

24.57

Weight (kDa)

5.66

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52970 AT5G52970
fragaria_vesca	FvH4_6g16320
malus_domestica	MD12G1113500.v1.1
prunus_persica	Prupe.6G232400_v2.0.a1 Prupe.6G232400_v2.0.a1
pyrus_communis	pycom12g11240
rosa_chinensis	RchiOBHm_Chr3g0470171 RchiOBHm_Chr6g0296991
rosa_laevigata	RLG00000002142 RLG00000013529 RLG00000013767 RLG00000014335 RLG00000018311 RLG00000023700 RLG00000024291 RLG00000036706
rosa_multiflora	Rmu_sc0001548.1_g000020 Rmu_sc0005600.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032810 Rroxscaffold_6G00411090 Rroxscaffold_6G00411120
rosa_rugosa	Rorug03G0107500 Rorug07G0274800
rosa_samantha	Rh2CG519300 Rh3AG156600 Rh3BG180700 Rh3CG171500 Rh3DG194200
rosa_wichuraiana	Rw0G005420 Rw0G008560 Rw3G014850 Rw3G014880 Rw4G006390 Rw6G009380 Rw7G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	415
Acc36I	ACCTGC	1 cut(s)	415
AccI	GTMKAC	1 cut(s)	535
AclWI	GGATC	1 cut(s)	658
AcsI	RAATTY	1 cut(s)	481
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	6 cut(s)	61, 106, 361, 481, 487, 599
AjnI	CCWGG	1 cut(s)	397
AleI	CACNNNNGTG	1 cut(s)	443
AluBI	AGCT	5 cut(s)	42, 69, 179, 497, 602
AluI	AGCT	5 cut(s)	42, 69, 179, 497, 602
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	2 cut(s)	96, 101
AlwI	GGATC	1 cut(s)	658
ApeKI	GCWGC	1 cut(s)	602
ApoI	RAATTY	1 cut(s)	481
ArsI	GACNNNNNNTTYG	2 cut(s)	449, 481
Asp700I	GAANNNNTTC	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	181
BbsI	GAAGAC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	1 cut(s)	589
BccI	CCATC	1 cut(s)	604
BceAI	ACGGC	1 cut(s)	568
BciT130I	CCWGG	1 cut(s)	399
BcoDI	GTCTC	2 cut(s)	96, 101
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	2 cut(s)	64, 603
BfuAI	ACCTGC	1 cut(s)	415
BisI	GCNGC	1 cut(s)	603
BlsI	GCNGC	1 cut(s)	604
Bme1390I	CCNGG	1 cut(s)	399
BmrFI	CCNGG	1 cut(s)	399
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	3 cut(s)	211, 577, 599
BmuI	ACTGGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	49
BplI	GAGNNNNNCTC	2 cut(s)	307, 339
BpmI	CTGGAG	3 cut(s)	55, 195, 550
BpuEI	CTTGAG	2 cut(s)	309, 362
BsaJI	CCNNGG	1 cut(s)	397
BsaWI	WCCGGW	1 cut(s)	144
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 486, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse1I	ACTGG	4 cut(s)	134, 543, 572, 638
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	4 cut(s)	134, 543, 572, 638
BseRI	GAGGAG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	589
BseYI	CCCAGC	1 cut(s)	542
Bsh1285I	CGRYCG	1 cut(s)	149
BsiEI	CGRYCG	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	114, 145
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	2 cut(s)	96, 101
BsmBI	CGTCTC	2 cut(s)	96, 101
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	663
BspCNI	CTCAG	1 cut(s)	171
BspMAI	CTGCAG	1 cut(s)	607
BspMI	ACCTGC	1 cut(s)	415
BspPI	GGATC	1 cut(s)	658
BsrI	ACTGG	4 cut(s)	134, 543, 572, 638
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	1 cut(s)	663
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	2 cut(s)	502, 656
Bst6I	CTCTTC	1 cut(s)	308
BstDEI	CTNAG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	436
BstKTI	GATC	1 cut(s)	666
BstMAI	GTCTC	2 cut(s)	96, 101
BstMBI	GATC	1 cut(s)	663
BstMCI	CGRYCG	1 cut(s)	149
BstMWI	GCNNNNNNNGC	1 cut(s)	611
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	397
BstSFI	CTRYAG	2 cut(s)	64, 603
BstV1I	GCAGC	1 cut(s)	589
BstV2I	GAAGAC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	663
BstYI	RGATCY	1 cut(s)	663
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	436
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	1 cut(s)	612
BveI	ACCTGC	1 cut(s)	415
CviJI	RGCY	7 cut(s)	42, 69, 179, 377, 497, 542, 602
CviKI_1	RGCY	7 cut(s)	42, 69, 179, 377, 497, 542, 602
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	1 cut(s)	665
DpnII	GATC	1 cut(s)	663
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Ecl136II	GAGCTC	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	181
Eco32I	GATATC	1 cut(s)	618
Eco53kI	GAGCTC	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	397
EcoRV	GATATC	1 cut(s)	618
EcoT22I	ATGCAT	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	181
Esp3I	CGTCTC	2 cut(s)	96, 101
FaiI	YATR	4 cut(s)	278, 476, 515, 560
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	1 cut(s)	603
FokI	GGATG	1 cut(s)	443
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	1 cut(s)	603
FspBI	CTAG	1 cut(s)	404
GluI	GCNGC	1 cut(s)	603
GsaI	CCCAGC	1 cut(s)	546
GsuI	CTGGAG	3 cut(s)	55, 195, 550
HapII	CCGG	2 cut(s)	114, 145
HincII	GTYRAC	2 cut(s)	238, 536
HindII	GTYRAC	2 cut(s)	238, 536
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	3 cut(s)	357, 369, 532
HpaI	GTTAAC	1 cut(s)	238
HpaII	CCGG	2 cut(s)	114, 145
Hpy166II	GTNNAC	3 cut(s)	238, 267, 536
Hpy188III	TCNNGA	6 cut(s)	72, 174, 308, 326, 341, 529
Hpy8I	GTNNAC	3 cut(s)	238, 267, 536
Hpy99I	CGWCG	2 cut(s)	91, 122
HpyAV	CCTTC	2 cut(s)	36, 571
HpyCH4III	ACNGT	2 cut(s)	502, 656
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	5 cut(s)	218, 224, 590, 605, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	611
HpyF3I	CTNAG	1 cut(s)	158
HpySE526I	ACGT	1 cut(s)	139
KspAI	GTTAAC	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	663
LmnI	GCTCC	3 cut(s)	74, 176, 494
Lsp1109I	GCAGC	1 cut(s)	589
LweI	GCATC	3 cut(s)	211, 577, 599
MaeI	CTAG	1 cut(s)	404
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	1 cut(s)	665
MboI	GATC	1 cut(s)	663
MboII	GAAGA	5 cut(s)	49, 75, 134, 325, 596
MfeI	CAATTG	1 cut(s)	441
MflI	RGATCY	1 cut(s)	663
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	4 cut(s)	248, 318, 441, 481
MlyI	GAGTC	2 cut(s)	378, 541
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	5 cut(s)	30, 33, 121, 305, 528
Mph1103I	ATGCAT	1 cut(s)	592
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	443
MspI	CCGG	2 cut(s)	114, 145
MspR9I	CCNGG	1 cut(s)	399
MunI	CAATTG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	1 cut(s)	611
NdeII	GATC	1 cut(s)	663
NsiI	ATGCAT	1 cut(s)	592
OliI	CACNNNNGTG	1 cut(s)	443
PaqCI	CACCTGC	1 cut(s)	415
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	357
PkrI	GCNGC	1 cut(s)	604
PleI	GAGTC	2 cut(s)	377, 540
PpsI	GAGTC	2 cut(s)	377, 540
Psp124BI	GAGCTC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	397
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	397
PstI	CTGCAG	1 cut(s)	607
PsuI	RGATCY	1 cut(s)	663
RseI	CAYNNNNRTG	1 cut(s)	443
SacI	GAGCTC	1 cut(s)	181
SalI	GTCGAC	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	1 cut(s)	603
Sau3AI	GATC	1 cut(s)	663
SchI	GAGTC	2 cut(s)	378, 541
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	181
SfaNI	GCATC	3 cut(s)	211, 577, 599
SfcI	CTRYAG	2 cut(s)	64, 603
SmiMI	CAYNNNNRTG	1 cut(s)	443
SmlI	CTYRAG	2 cut(s)	324, 341
SmoI	CTYRAG	2 cut(s)	324, 341
Sse9I	AATT	4 cut(s)	248, 318, 441, 481
SspMI	CTAG	1 cut(s)	404
SstI	GAGCTC	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	397
TaaI	ACNGT	2 cut(s)	502, 656
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	4 cut(s)	16, 149, 535, 646
TasI	AATT	4 cut(s)	248, 318, 441, 481
TfiI	GAWTC	1 cut(s)	357
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	612
TseI	GCWGC	1 cut(s)	602
TspRI	CASTG	1 cut(s)	612
XapI	RAATTY	1 cut(s)	481
XmiI	GTMKAC	1 cut(s)	535
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	1 cut(s)	404
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.