Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003288

Physical Location & Seq

Genomic Coordinates Reverse (-)

34191683 .. 34193344

Gene Structure 1662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024291

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCATTTCTCCTTCCTCCATGTTCATCTTCCACTTCCCAAACACCCTCACCTCTCTCATTCCATCCACCCATTACGTCCTCGTCAAATCTCTCTTCAACCCAAATTCCAACCAAATCCAGCAATGACTGGATTTCGAAATTCCGCTCCAAATCTTTAAATTTCGCGCTCTCCGGAGCTCTGACGCTCGGACTATCTCTCTCAGGTGTAGGAGTTGCTCATGCATTAGTTGGAGTGAACAAGCCAGATTTGCTTCCAAAAGAGTTTAGTCCAGTGATTGATGTAGCCGGCTTCCTCTCCGATGGCCAGGAGAAAAGACTAGCTCAGGAGATTGCTAATATAGAGAAGGATACTGGATTCAAGTTGAGGGTTCTAGCTCAGAACTATCCTGACACGCCAGGTTTGGCGATCAAAGATTTCTGGCAAGTGGATGATAGAACTATTGTCTTTGTTGCTGATCCCACTTTTGGGAATATACTAAACTTCAATGTGGGAGCTTTGGTTGATCTAGATGTTCCGCGCAGCTTTTGGAGTCGTCTGGCTGGGAAGTACGGGAATATGTTTTATTGGAAAGAGAAGGGGGAAGATGGATCGATTGAAGCTGCTGTAACGGCAATATCTAACTGCTTGAGAGAACCTGTAGGCTCTAATAATTGCTCCGAGTTATACTGTGTAGAGTTGAAGATAGATGAGCCATGGTTGTTCACTAAATATAAATTCATACTGGAGCCTCTGATTACAGAGTCTGCTTCGGAAGAATCTAAGCAGCCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0031977 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044436 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPM_phosphatase

Protein Analysis

259

Amino Acids

28.24

Weight (kDa)

5.06

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52970 AT5G52970
fragaria_vesca	FvH4_6g16320
malus_domestica	MD12G1113500.v1.1
prunus_persica	Prupe.6G232400_v2.0.a1 Prupe.6G232400_v2.0.a1
pyrus_communis	pycom12g11240
rosa_chinensis	RchiOBHm_Chr3g0470171 RchiOBHm_Chr6g0296991
rosa_laevigata	RLG00000002142 RLG00000013529 RLG00000013767 RLG00000014335 RLG00000018311 RLG00000023700 RLG00000024291 RLG00000036706
rosa_multiflora	Rmu_sc0001548.1_g000020 Rmu_sc0005600.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032810 Rroxscaffold_6G00411090 Rroxscaffold_6G00411120
rosa_rugosa	Rorug03G0107500 Rorug07G0274800
rosa_samantha	Rh2CG519300 Rh3AG156600 Rh3BG180700 Rh3CG171500 Rh3DG194200
rosa_wichuraiana	Rw0G005420 Rw0G008560 Rw3G014850 Rw3G014880 Rw4G006390 Rw6G009380 Rw7G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	147
AccII	CGCG	2 cut(s)	167, 520
AccIII	TCCGGA	1 cut(s)	173
AciI	CCGC	2 cut(s)	145, 518
AclWI	GGATC	2 cut(s)	452, 598
AcoI	YGGCCR	1 cut(s)	304
AcsI	RAATTY	4 cut(s)	105, 140, 160, 716
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	2 cut(s)	467, 468
AgsI	TTSAA	5 cut(s)	99, 361, 487, 599, 682
AjnI	CCWGG	2 cut(s)	306, 397
AluBI	AGCT	6 cut(s)	179, 323, 377, 497, 525, 602
AluI	AGCT	6 cut(s)	179, 323, 377, 497, 525, 602
Alw21I	GWGCWC	1 cut(s)	181
AlwI	GGATC	2 cut(s)	452, 598
AlwNI	CAGNNNCTG	1 cut(s)	746
Aor13HI	TCCGGA	1 cut(s)	173
AoxI	GGCC	1 cut(s)	304
ApeKI	GCWGC	3 cut(s)	522, 602, 766
ApoI	RAATTY	4 cut(s)	105, 140, 160, 716
AspLEI	GCGC	2 cut(s)	169, 522
AsuHPI	GGTGA	1 cut(s)	42
AsuII	TTCGAA	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	534, 589
BccI	CCATC	3 cut(s)	72, 296, 581
BceAI	ACGGC	1 cut(s)	627
BciT130I	CCWGG	2 cut(s)	308, 399
BciVI	GTATCC	1 cut(s)	343
BfaI	CTAG	3 cut(s)	320, 374, 509
BfmI	CTRYAG	1 cut(s)	639
BfuI	GTATCC	1 cut(s)	343
BisI	GCNGC	3 cut(s)	523, 603, 767
BlsI	GCNGC	3 cut(s)	524, 604, 768
Bme1390I	CCNGG	2 cut(s)	308, 399
BmiI	GGNNCC	1 cut(s)	729
BmrFI	CCNGG	2 cut(s)	308, 399
BpmI	CTGGAG	1 cut(s)	746
Bpu10I	CCTNAGC	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	649
Bsa29I	ATCGAT	1 cut(s)	593
BsaJI	CCNNGG	1 cut(s)	695
BsaWI	WCCGGW	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 468
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	4 cut(s)	134, 272, 358, 729
Bse3DI	GCAATG	1 cut(s)	130
BseAI	TCCGGA	1 cut(s)	173
BseBI	CCWGG	2 cut(s)	308, 399
BseCI	ATCGAT	1 cut(s)	593
BseDI	CCNNGG	1 cut(s)	695
BseGI	GGATG	2 cut(s)	64, 436
BseLI	CCNNNNNNNGG	2 cut(s)	467, 468
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	3 cut(s)	216, 338, 392
BseNI	ACTGG	4 cut(s)	134, 272, 358, 729
BseXI	GCAGC	2 cut(s)	534, 589
BseYI	CCCAGC	1 cut(s)	542
Bsh1236I	CGCG	2 cut(s)	167, 520
BshFI	GGCC	1 cut(s)	306
BshVI	ATCGAT	1 cut(s)	593
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	174, 288
BslI	CCNNNNNNNGG	2 cut(s)	467, 468
BsnI	GGCC	1 cut(s)	306
Bsp119I	TTCGAA	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp13I	TCCGGA	1 cut(s)	173
Bsp143I	GATC	4 cut(s)	408, 457, 505, 590
Bsp19I	CCATGG	1 cut(s)	695
BspACI	CCGC	2 cut(s)	145, 518
BspANI	GGCC	1 cut(s)	306
BspCNI	CTCAG	3 cut(s)	215, 337, 391
BspDI	ATCGAT	1 cut(s)	593
BspEI	TCCGGA	1 cut(s)	173
BspFNI	CGCG	2 cut(s)	167, 520
BspLI	GGNNCC	1 cut(s)	729
BspPI	GGATC	2 cut(s)	452, 598
BspT104I	TTCGAA	1 cut(s)	137
BsrBI	CCGCTC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	4 cut(s)	134, 272, 358, 729
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	695
BssMI	GATC	4 cut(s)	408, 457, 505, 590
BssT1I	CCWWGG	1 cut(s)	695
Bst2UI	CCWGG	2 cut(s)	308, 399
Bst4CI	ACNGT	1 cut(s)	671
Bst6I	CTCTTC	1 cut(s)	100
BstBI	TTCGAA	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	4 cut(s)	202, 324, 378, 762
BstDSI	CCRYGG	1 cut(s)	695
BstF5I	GGATG	2 cut(s)	64, 436
BstFNI	CGCG	2 cut(s)	167, 520
BstHHI	GCGC	2 cut(s)	169, 522
BstKTI	GATC	4 cut(s)	411, 460, 508, 593
BstMBI	GATC	4 cut(s)	408, 457, 505, 590
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 611
BstNI	CCWGG	2 cut(s)	308, 399
BstSCI	CCNGG	2 cut(s)	306, 397
BstSFI	CTRYAG	1 cut(s)	639
BstUI	CGCG	2 cut(s)	167, 520
BstV1I	GCAGC	2 cut(s)	534, 589
Bsu15I	ATCGAT	1 cut(s)	593
BsuI	GTATCC	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	306
BsuTUI	ATCGAT	1 cut(s)	593
BtgI	CCRYGG	1 cut(s)	695
BtsCI	GGATG	2 cut(s)	64, 436
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	289
CaiI	CAGNNNCTG	1 cut(s)	746
CfoI	GCGC	2 cut(s)	169, 522
Cfr10I	RCCGGY	1 cut(s)	287
ClaI	ATCGAT	1 cut(s)	593
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	3 cut(s)	21, 221, 696
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	4 cut(s)	202, 324, 378, 762
DpnI	GATC	4 cut(s)	410, 459, 507, 592
DpnII	GATC	4 cut(s)	408, 457, 505, 590
DraI	TTTAAA	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	695
Eco24I	GRGCYC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	179
EcoRII	CCWGG	2 cut(s)	306, 397
EcoT14I	CCWWGG	1 cut(s)	695
EcoT22I	ATGCAT	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	695
FaeI	CATG	3 cut(s)	24, 224, 699
FaiI	YATR	9 cut(s)	22, 222, 341, 476, 560, 667, 697, 714, 722
FatI	CATG	3 cut(s)	20, 220, 695
Fnu4HI	GCNGC	3 cut(s)	523, 603, 767
FokI	GGATG	2 cut(s)	51, 443
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	3 cut(s)	523, 603, 767
FspBI	CTAG	3 cut(s)	320, 374, 509
GlaI	GCGC	2 cut(s)	168, 521
GluI	GCNGC	3 cut(s)	523, 603, 767
GsaI	CCCAGC	1 cut(s)	546
GsuI	CTGGAG	1 cut(s)	746
HaeIII	GGCC	1 cut(s)	306
HapII	CCGG	2 cut(s)	174, 288
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	2 cut(s)	169, 522
Hin1II	CATG	3 cut(s)	24, 224, 699
Hin6I	GCGC	2 cut(s)	167, 520
HinP1I	GCGC	2 cut(s)	167, 520
HinfI	GANTC	4 cut(s)	357, 532, 743, 758
HpaII	CCGG	2 cut(s)	174, 288
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	2 cut(s)	238, 705
Hpy188I	TCNGA	8 cut(s)	183, 191, 301, 381, 661, 735, 754, 776
Hpy188III	TCNNGA	4 cut(s)	174, 326, 389, 509
Hpy8I	GTNNAC	2 cut(s)	238, 705
HpyAV	CCTTC	3 cut(s)	23, 340, 571
HpyCH4III	ACNGT	1 cut(s)	671
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 611
HpyF3I	CTNAG	4 cut(s)	202, 324, 378, 762
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	3 cut(s)	24, 224, 699
HspAI	GCGC	2 cut(s)	167, 520
Kpn2I	TCCGGA	1 cut(s)	173
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Kzo9I	GATC	4 cut(s)	408, 457, 505, 590
LmnI	GCTCC	5 cut(s)	152, 176, 494, 662, 727
Lsp1109I	GCAGC	2 cut(s)	534, 589
MaeI	CTAG	3 cut(s)	320, 374, 509
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	607
MalI	GATC	4 cut(s)	410, 459, 507, 592
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	4 cut(s)	408, 457, 505, 590
MboII	GAAGA	5 cut(s)	21, 87, 596, 694, 767
MhlI	GDGCHC	1 cut(s)	181
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	5 cut(s)	105, 140, 160, 652, 716
MluNI	TGGCCA	1 cut(s)	306
MlyI	GAGTC	2 cut(s)	541, 752
MmeI	TCCRAC	2 cut(s)	134, 211
MnlI	CCTC	7 cut(s)	27, 58, 63, 91, 305, 360, 741
Mox20I	TGGCCA	1 cut(s)	306
Mph1103I	ATGCAT	1 cut(s)	226
MroI	TCCGGA	1 cut(s)	173
MroNI	GCCGGC	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	306
MspI	CCGG	2 cut(s)	174, 288
MspR9I	CCNGG	2 cut(s)	308, 399
MvaI	CCWGG	2 cut(s)	308, 399
MvnI	CGCG	2 cut(s)	167, 520
MwoI	GCNNNNNNNGC	2 cut(s)	250, 611
NaeI	GCCGGC	1 cut(s)	289
NcoI	CCATGG	1 cut(s)	695
NdeII	GATC	4 cut(s)	408, 457, 505, 590
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	3 cut(s)	24, 224, 699
NlaIV	GGNNCC	1 cut(s)	729
NsiI	ATGCAT	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	137
PdiI	GCCGGC	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	357, 758
PkrI	GCNGC	3 cut(s)	524, 604, 768
PleI	GAGTC	2 cut(s)	540, 751
PpsI	GAGTC	2 cut(s)	540, 751
Psp124BI	GAGCTC	1 cut(s)	181
Psp6I	CCWGG	2 cut(s)	306, 397
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	2 cut(s)	306, 397
PspN4I	GGNNCC	1 cut(s)	729
PstNI	CAGNNNCTG	1 cut(s)	746
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
SacI	GAGCTC	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	3 cut(s)	523, 603, 767
Sau3AI	GATC	4 cut(s)	408, 457, 505, 590
SchI	GAGTC	2 cut(s)	541, 752
ScrFI	CCNGG	2 cut(s)	308, 399
SduI	GDGCHC	1 cut(s)	181
SfcI	CTRYAG	1 cut(s)	639
SfuI	TTCGAA	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	628
SmoI	CTYRAG	1 cut(s)	628
Sse9I	AATT	5 cut(s)	105, 140, 160, 652, 716
SsiI	CCGC	2 cut(s)	145, 518
SspMI	CTAG	3 cut(s)	320, 374, 509
SstI	GAGCTC	1 cut(s)	181
StyD4I	CCNGG	2 cut(s)	306, 397
StyI	CCWWGG	1 cut(s)	695
TaaI	ACNGT	1 cut(s)	671
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	2 cut(s)	137, 593
TasI	AATT	5 cut(s)	105, 140, 160, 652, 716
TfiI	GAWTC	2 cut(s)	357, 758
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	279
TseI	GCWGC	3 cut(s)	522, 602, 766
TspDTI	ATGAA	2 cut(s)	15, 709
TspRI	CASTG	1 cut(s)	279
XapI	RAATTY	4 cut(s)	105, 140, 160, 716
XbaI	TCTAGA	1 cut(s)	508
XspI	CTAG	3 cut(s)	320, 374, 509
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.