Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003288

Physical Location & Seq

Genomic Coordinates Reverse (-)

15681133 .. 15682372

Gene Structure 1240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G009380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCAGATGTTAGGCATAAGATAGTTGTCTATCGAAAAGGAAATTTTACTGTCCAAGAAGATCAACTCCTGTGTCATTTATATCTTTCAATTTCTCAGGATTCTATCGAAGGTGTTAATCAAAAGAAAGATAAAGTATGGGAAAGAATAACTGATTTATGGAATAAGGATAAGGATGAACACCAGATGCGAAACGCCAAGTCTCTTCAAAGTCGATTTTCTGATCTTAACTATTGCGTAAGCAAATTTCGTGGTTCACTTCGCCAGGTGGAAAATCGGAATCAAAGTGGTGCTTCAGAGAAAGATATTTATGCCCAGGCAAAACAACATCTACTAGATGATTCTAACTATACAAAGAAGAAGCTTCAATTTGATCATGTTACATTACCATTTGATGTCAATTTGAATGCAGATGAAGACGAACAAGAGCTGCTTAGTGATGAACTTGCCTCACCTCACCGGCCTATTGGTAGAAATGCTTTTTCCTCTAAGCATGAGGAATATGCATCTCAAAAATTAGCTATTCAACGTCAACATGAGGAGAGCAAGACCATGCTTACTAGTTTGGATTCAATTACAGATCCAGAAGGACGTGAGTACTTACGAATGAAAAAAACTGAAATAATAGAGAGAAGAGCTCGTGAGTCCCAACTACAACAATCACCTGCAACATTTGGCTATGGTAATTTTGGATATGGACAACACTATGGAGCAGGAAGTGGAAGTGGTGGATCTGGAACAAGTGGTGCACATGCAGGAGTGCAACAATTCGGTGGTAGCAGTAGATCCAATACACATGGTGGATATGGAGGAATGCCAGAACATGGAGGAAGTAATGATAGTCTACCGGAATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

285

Amino Acids

32.12

Weight (kDa)

6.31

Isoelectric Point (pI)

56.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52970 AT5G52970
fragaria_vesca	FvH4_6g16320
malus_domestica	MD12G1113500.v1.1
prunus_persica	Prupe.6G232400_v2.0.a1 Prupe.6G232400_v2.0.a1
pyrus_communis	pycom12g11240
rosa_chinensis	RchiOBHm_Chr3g0470171 RchiOBHm_Chr6g0296991
rosa_laevigata	RLG00000002142 RLG00000013529 RLG00000013767 RLG00000014335 RLG00000018311 RLG00000023700 RLG00000024291 RLG00000036706
rosa_multiflora	Rmu_sc0001548.1_g000020 Rmu_sc0005600.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032810 Rroxscaffold_6G00411090 Rroxscaffold_6G00411120
rosa_rugosa	Rorug03G0107500 Rorug07G0274800
rosa_samantha	Rh2CG519300 Rh3AG156600 Rh3BG180700 Rh3CG171500 Rh3DG194200
rosa_wichuraiana	Rw0G005420 Rw0G008560 Rw3G014850 Rw3G014880 Rw4G006390 Rw6G009380 Rw7G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	673
Acc36I	ACCTGC	1 cut(s)	673
AccB7I	CCANNNNNTGG	1 cut(s)	824
AccI	GTMKAC	1 cut(s)	844
AclWI	GGATC	3 cut(s)	575, 739, 780
AcsI	RAATTY	2 cut(s)	43, 245
AcuI	CTGAAG	1 cut(s)	279
AdeI	CACNNNGTG	1 cut(s)	800
AfaI	GTAC	1 cut(s)	599
AfiI	CCNNNNNNNGG	1 cut(s)	824
AgsI	TTSAA	6 cut(s)	90, 209, 368, 406, 527, 573
AhlI	ACTAGT	1 cut(s)	560
AjiI	CACGTC	1 cut(s)	593
AjnI	CCWGG	2 cut(s)	264, 315
AluBI	AGCT	4 cut(s)	364, 430, 521, 638
AluI	AGCT	4 cut(s)	364, 430, 521, 638
Alw21I	GWGCWC	2 cut(s)	640, 751
Alw26I	GTCTC	1 cut(s)	207
Alw44I	GTGCAC	1 cut(s)	747
AlwI	GGATC	3 cut(s)	575, 739, 780
AoxI	GGCC	1 cut(s)	461
ApaLI	GTGCAC	1 cut(s)	747
ApeKI	GCWGC	1 cut(s)	430
ApoI	RAATTY	2 cut(s)	43, 245
AsuHPI	GGTGA	3 cut(s)	444, 449, 654
BaeGI	GKGCMC	1 cut(s)	751
BanII	GRGCYC	1 cut(s)	640
BauI	CACGAG	1 cut(s)	639
BbsI	GAAGAC	1 cut(s)	423
Bbv12I	GWGCWC	2 cut(s)	640, 751
BbvI	GCAGC	1 cut(s)	417
BciT130I	CCWGG	2 cut(s)	266, 317
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	207
BcuI	ACTAGT	1 cut(s)	560
BfaI	CTAG	2 cut(s)	335, 561
BfuAI	ACCTGC	1 cut(s)	673
BisI	GCNGC	1 cut(s)	431
BlsI	GCNGC	1 cut(s)	432
BmcAI	AGTACT	1 cut(s)	599
Bme1390I	CCNGG	2 cut(s)	266, 317
BmgBI	CACGTC	1 cut(s)	593
BmrFI	CCNGG	2 cut(s)	266, 317
BmsI	GCATC	2 cut(s)	177, 515
BpiI	GAAGAC	1 cut(s)	423
BplI	GAGNNNNNCTC	2 cut(s)	622, 654
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	847
Bsc4I	CCNNNNNNNGG	1 cut(s)	824
Bse118I	RCCGGY	1 cut(s)	459
BseBI	CCWGG	2 cut(s)	266, 317
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	824
BseMII	CTCAG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	554
BseSI	GKGCMC	1 cut(s)	751
BseXI	GCAGC	1 cut(s)	417
BshFI	GGCC	1 cut(s)	463
BsiHKAI	GWGCWC	2 cut(s)	640, 751
BsiSI	CCGG	2 cut(s)	460, 848
BslFI	GGGAC	1 cut(s)	631
BslI	CCNNNNNNNGG	1 cut(s)	824
BsmAI	GTCTC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	631
BsmI	GAATGC	2 cut(s)	412, 819
BsnI	GGCC	1 cut(s)	463
Bsp1286I	GDGCHC	2 cut(s)	640, 751
Bsp143I	GATC	6 cut(s)	61, 223, 373, 580, 731, 785
BspANI	GGCC	1 cut(s)	463
BspCNI	CTCAG	1 cut(s)	109
BspMI	ACCTGC	1 cut(s)	673
BspPI	GGATC	3 cut(s)	575, 739, 780
BspQI	GCTCTTC	1 cut(s)	628
BsrFI	RCCGGY	1 cut(s)	459
BssAI	RCCGGY	1 cut(s)	459
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	6 cut(s)	61, 223, 373, 580, 731, 785
BssSI	CACGAG	1 cut(s)	639
Bst2BI	CACGAG	1 cut(s)	639
Bst2UI	CCWGG	2 cut(s)	266, 317
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	2 cut(s)	210, 628
BstDEI	CTNAG	3 cut(s)	96, 434, 489
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	6 cut(s)	64, 226, 376, 583, 734, 788
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	6 cut(s)	61, 223, 373, 580, 731, 785
BstNI	CCWGG	2 cut(s)	266, 317
BstNSI	RCATGY	1 cut(s)	755
BstSCI	CCNGG	2 cut(s)	264, 315
BstSLI	GKGCMC	1 cut(s)	751
BstV1I	GCAGC	1 cut(s)	417
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	3 cut(s)	580, 731, 785
BstYI	RGATCY	3 cut(s)	580, 731, 785
BsuRI	GGCC	1 cut(s)	463
BtrI	CACGTC	1 cut(s)	593
BtsCI	GGATG	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	673
Cfr10I	RCCGGY	1 cut(s)	459
Csp6I	GTAC	1 cut(s)	598
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviAII	CATG	7 cut(s)	377, 494, 536, 553, 752, 797, 824
CviJI	RGCY	6 cut(s)	364, 430, 463, 521, 638, 678
CviKI_1	RGCY	6 cut(s)	364, 430, 463, 521, 638, 678
CviQI	GTAC	1 cut(s)	598
DdeI	CTNAG	3 cut(s)	96, 434, 489
DpnI	GATC	6 cut(s)	63, 225, 375, 582, 733, 787
DpnII	GATC	6 cut(s)	61, 223, 373, 580, 731, 785
DraIII	CACNNNGTG	1 cut(s)	800
Eam1104I	CTCTTC	2 cut(s)	210, 628
EarI	CTCTTC	2 cut(s)	210, 628
Ecl136II	GAGCTC	1 cut(s)	638
Eco24I	GRGCYC	1 cut(s)	640
Eco53kI	GAGCTC	1 cut(s)	638
Eco57I	CTGAAG	1 cut(s)	279
EcoICRI	GAGCTC	1 cut(s)	638
EcoRII	CCWGG	2 cut(s)	264, 315
EcoT22I	ATGCAT	1 cut(s)	508
EcoT38I	GRGCYC	1 cut(s)	640
FaeI	CATG	7 cut(s)	380, 497, 539, 556, 755, 800, 827
FalI	AAGNNNNNCTT	4 cut(s)	277, 309, 417, 449
FaqI	GGGAC	1 cut(s)	631
FatI	CATG	7 cut(s)	376, 493, 535, 552, 751, 796, 823
FbaI	TGATCA	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	844
Fnu4HI	GCNGC	1 cut(s)	431
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	1 cut(s)	640
Fsp4HI	GCNGC	1 cut(s)	431
FspBI	CTAG	2 cut(s)	335, 561
GluI	GCNGC	1 cut(s)	431
HaeIII	GGCC	1 cut(s)	463
HapII	CCGG	2 cut(s)	460, 848
Hin1II	CATG	7 cut(s)	380, 497, 539, 556, 755, 800, 827
HincII	GTYRAC	1 cut(s)	533
HindII	GTYRAC	1 cut(s)	533
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	5 cut(s)	101, 280, 341, 569, 644
HpaII	CCGG	2 cut(s)	460, 848
HphI	GGTGA	3 cut(s)	444, 449, 654
Hpy166II	GTNNAC	4 cut(s)	257, 533, 749, 845
Hpy188I	TCNGA	3 cut(s)	223, 279, 298
Hpy188III	TCNNGA	4 cut(s)	98, 584, 641, 735
Hpy8I	GTNNAC	4 cut(s)	257, 533, 749, 845
HpyAV	CCTTC	2 cut(s)	104, 581
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	2 cut(s)	529, 592
HpyCH4V	TGCA	6 cut(s)	410, 506, 668, 749, 755, 763
HpyF3I	CTNAG	3 cut(s)	96, 434, 489
HpySE526I	ACGT	2 cut(s)	529, 592
Hsp92II	CATG	7 cut(s)	380, 497, 539, 556, 755, 800, 827
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	6 cut(s)	61, 223, 373, 580, 731, 785
LguI	GCTCTTC	1 cut(s)	628
LmnI	GCTCC	1 cut(s)	710
Lsp1109I	GCAGC	1 cut(s)	417
LweI	GCATC	2 cut(s)	177, 515
MaeI	CTAG	2 cut(s)	335, 561
MaeII	ACGT	2 cut(s)	529, 592
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	6 cut(s)	63, 225, 375, 582, 733, 787
MboI	GATC	6 cut(s)	61, 223, 373, 580, 731, 785
MboII	GAAGA	5 cut(s)	71, 197, 370, 428, 645
MflI	RGATCY	3 cut(s)	580, 731, 785
MhlI	GDGCHC	2 cut(s)	640, 751
MluCI	AATT	9 cut(s)	43, 90, 245, 368, 400, 515, 573, 685, 767
MlyI	GAGTC	1 cut(s)	653
MnlI	CCTC	7 cut(s)	460, 465, 490, 496, 532, 803, 821
Mph1103I	ATGCAT	1 cut(s)	508
MseI	TTAA	2 cut(s)	117, 228
MspI	CCGG	2 cut(s)	460, 848
MspR9I	CCNGG	2 cut(s)	266, 317
Mva1269I	GAATGC	2 cut(s)	412, 819
MvaI	CCWGG	2 cut(s)	266, 317
NdeII	GATC	6 cut(s)	61, 223, 373, 580, 731, 785
NlaIII	CATG	7 cut(s)	380, 497, 539, 556, 755, 800, 827
NsiI	ATGCAT	1 cut(s)	508
NspI	RCATGY	1 cut(s)	755
PaqCI	CACCTGC	1 cut(s)	673
PciSI	GCTCTTC	1 cut(s)	628
PctI	GAATGC	2 cut(s)	412, 819
PfeI	GAWTC	4 cut(s)	101, 280, 341, 569
PflMI	CCANNNNNTGG	1 cut(s)	824
PkrI	GCNGC	1 cut(s)	432
PleI	GAGTC	1 cut(s)	652
PpsI	GAGTC	1 cut(s)	652
Psp124BI	GAGCTC	1 cut(s)	640
Psp6I	CCWGG	2 cut(s)	264, 315
PspGI	CCWGG	2 cut(s)	264, 315
PsuI	RGATCY	3 cut(s)	580, 731, 785
RsaI	GTAC	1 cut(s)	599
RsaNI	GTAC	1 cut(s)	598
SacI	GAGCTC	1 cut(s)	640
SapI	GCTCTTC	1 cut(s)	628
SaqAI	TTAA	2 cut(s)	117, 228
SatI	GCNGC	1 cut(s)	431
Sau3AI	GATC	6 cut(s)	61, 223, 373, 580, 731, 785
ScaI	AGTACT	1 cut(s)	599
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	2 cut(s)	266, 317
SduI	GDGCHC	2 cut(s)	640, 751
SfaNI	GCATC	2 cut(s)	177, 515
SpeI	ACTAGT	1 cut(s)	560
Sse9I	AATT	9 cut(s)	43, 90, 245, 368, 400, 515, 573, 685, 767
SspMI	CTAG	2 cut(s)	335, 561
SstI	GAGCTC	1 cut(s)	640
StyD4I	CCNGG	2 cut(s)	264, 315
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	2 cut(s)	532, 595
TaqI	TCGA	3 cut(s)	34, 108, 214
TasI	AATT	9 cut(s)	43, 90, 245, 368, 400, 515, 573, 685, 767
TatI	WGTACW	1 cut(s)	597
TfiI	GAWTC	4 cut(s)	101, 280, 341, 569
Tru1I	TTAA	2 cut(s)	117, 228
Tru9I	TTAA	2 cut(s)	117, 228
TseI	GCWGC	1 cut(s)	430
TspDTI	ATGAA	4 cut(s)	192, 429, 456, 623
Van91I	CCANNNNNTGG	1 cut(s)	824
VneI	GTGCAC	1 cut(s)	747
XapI	RAATTY	2 cut(s)	43, 245
XceI	RCATGY	1 cut(s)	755
XmiI	GTMKAC	1 cut(s)	844
XspI	CTAG	2 cut(s)	335, 561
ZrmI	AGTACT	1 cut(s)	599
Zsp2I	ATGCAT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.