RLG00000013529

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003288
Physical Location & Seq
Forward (+)
32681767 .. 32682458
692 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013529

Sequence Viewer

Length: 555 bp
ATGGAGAGGAGAGTTCGCGAGTCCCAACTACAACAATCACCTGCAATATTTGACTATAGTAATTTTGGTAACATAAACCAATTTCAAGATGTTTCACAAGCAACTTTCAACTCTGGTAACTTTGCTAGTCCATTCCAATTTTCAACTACAATTGGAGGAAGTGGTGGATATGGACAACACTATGGAGGAACTGTTGGATATGGTGAAATTCCTCATTATGGAGGAAGTGGTGGATCCGGAACAAGTGGTGCACATGGAGGAGTGCAACAATTCAGTGATAGCGGTGGATTCAAAACAAATGGTGGATATGGAAGAATGCCAGAACATGGAGGAAGTGATGATATGGTGGATATGGACAACACTATGGACGAACCATTGGATATGGTGAAATTCCTCATTATGGAGGAAGTGGTGGATCCGGAACAAGTGATGCACATGGAGGAGTGCAACAATTCAATGATAGCGGTGGATCCAAAACAAATGGTGGATATGGAAGAATGCCAGAACATAGAGGAAATGATGATAGTCTACCGAAATACTAACTGTGGTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

185

Amino Acids

20.11

Weight (kDa)

4.34

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 49
Acc36I ACCTGC 1 cut(s) 49
AccB7I CCANNNNNTGG 1 cut(s) 326
AccI GTMKAC 1 cut(s) 528
AccII CGCG 1 cut(s) 18
AccIII TCCGGA 2 cut(s) 236, 418
AciI CCGC 2 cut(s) 282, 464
AclWI GGATC 6 cut(s) 228, 241, 410, 423, 464, 477
AcsI RAATTY 2 cut(s) 207, 389
AfiI CCNNNNNNNGG 3 cut(s) 218, 326, 400
AgsI TTSAA 5 cut(s) 86, 109, 144, 292, 456
Alw21I GWGCWC 1 cut(s) 253
Alw44I GTGCAC 1 cut(s) 249
AlwI GGATC 6 cut(s) 228, 241, 410, 423, 464, 477
Aor13HI TCCGGA 2 cut(s) 236, 418
ApaLI GTGCAC 1 cut(s) 249
ApoI RAATTY 2 cut(s) 207, 389
AsuHPI GGTGA 3 cut(s) 30, 215, 397
BaeGI GKGCMC 1 cut(s) 253
BamHI GGATCC 3 cut(s) 233, 415, 469
Bbv12I GWGCWC 1 cut(s) 253
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 55
BfuAI ACCTGC 1 cut(s) 49
BmiI GGNNCC 3 cut(s) 235, 417, 471
BmsI GCATC 1 cut(s) 420
BsaWI WCCGGW 2 cut(s) 236, 418
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bsc4I CCNNNNNNNGG 3 cut(s) 218, 326, 400
BseAI TCCGGA 2 cut(s) 236, 418
BseLI CCNNNNNNNGG 3 cut(s) 218, 326, 400
BseRI GAGGAG 3 cut(s) 22, 273, 455
BseSI GKGCMC 1 cut(s) 253
Bsh1236I CGCG 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 253
BsiSI CCGG 2 cut(s) 237, 419
BslFI GGGAC 1 cut(s) 7
BslI CCNNNNNNNGG 3 cut(s) 218, 326, 400
BsmFI GGGAC 1 cut(s) 7
BsmI GAATGC 2 cut(s) 321, 503
Bsp1286I GDGCHC 1 cut(s) 253
Bsp13I TCCGGA 2 cut(s) 236, 418
Bsp143I GATC 3 cut(s) 233, 415, 469
Bsp68I TCGCGA 1 cut(s) 18
BspACI CCGC 2 cut(s) 282, 464
BspEI TCCGGA 2 cut(s) 236, 418
BspFNI CGCG 1 cut(s) 18
BspLI GGNNCC 3 cut(s) 235, 417, 471
BspMI ACCTGC 1 cut(s) 49
BspPI GGATC 6 cut(s) 228, 241, 410, 423, 464, 477
BssMI GATC 3 cut(s) 233, 415, 469
Bst4CI ACNGT 2 cut(s) 193, 545
BstFNI CGCG 1 cut(s) 18
BstKTI GATC 3 cut(s) 236, 418, 472
BstMBI GATC 3 cut(s) 233, 415, 469
BstSFI CTRYAG 1 cut(s) 55
BstSLI GKGCMC 1 cut(s) 253
BstUI CGCG 1 cut(s) 18
BstX2I RGATCY 3 cut(s) 233, 415, 469
BstYI RGATCY 3 cut(s) 233, 415, 469
BtsIMutI CAGTG 1 cut(s) 280
BtuMI TCGCGA 1 cut(s) 18
BveI ACCTGC 1 cut(s) 49
CviAII CATG 3 cut(s) 254, 326, 436
DpnI GATC 3 cut(s) 235, 417, 471
DpnII GATC 3 cut(s) 233, 415, 469
FaeI CATG 3 cut(s) 257, 329, 439
FaqI GGGAC 1 cut(s) 7
FatI CATG 3 cut(s) 253, 325, 435
FblI GTMKAC 1 cut(s) 528
FspBI CTAG 1 cut(s) 126
HapII CCGG 2 cut(s) 237, 419
Hin1II CATG 3 cut(s) 257, 329, 439
HinfI GANTC 2 cut(s) 20, 288
HpaII CCGG 2 cut(s) 237, 419
HphI GGTGA 3 cut(s) 30, 215, 397
Hpy166II GTNNAC 2 cut(s) 251, 529
Hpy188III TCNNGA 4 cut(s) 17, 86, 237, 419
Hpy8I GTNNAC 2 cut(s) 251, 529
HpyCH4III ACNGT 2 cut(s) 193, 545
HpyCH4V TGCA 5 cut(s) 44, 251, 265, 433, 447
Hsp92II CATG 3 cut(s) 257, 329, 439
Kpn2I TCCGGA 2 cut(s) 236, 418
Kzo9I GATC 3 cut(s) 233, 415, 469
LpnPI CCDG 6 cut(s) 54, 99, 250, 333, 432, 515
LweI GCATC 1 cut(s) 420
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 68, 116
MalI GATC 3 cut(s) 235, 417, 471
MboI GATC 3 cut(s) 233, 415, 469
MboII GAAGA 2 cut(s) 324, 506
MfeI CAATTG 1 cut(s) 150
MflI RGATCY 3 cut(s) 233, 415, 469
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 8 cut(s) 61, 80, 137, 150, 207, 269, 389, 451
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 175
MroI TCCGGA 2 cut(s) 236, 418
MspI CCGG 2 cut(s) 237, 419
MunI CAATTG 1 cut(s) 150
Mva1269I GAATGC 2 cut(s) 321, 503
MvnI CGCG 1 cut(s) 18
NdeII GATC 3 cut(s) 233, 415, 469
NlaIII CATG 3 cut(s) 257, 329, 439
NlaIV GGNNCC 3 cut(s) 235, 417, 471
NruI TCGCGA 1 cut(s) 18
PaqCI CACCTGC 1 cut(s) 49
PctI GAATGC 2 cut(s) 321, 503
PfeI GAWTC 1 cut(s) 288
PflMI CCANNNNNTGG 1 cut(s) 326
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PspN4I GGNNCC 3 cut(s) 235, 417, 471
PsuI RGATCY 3 cut(s) 233, 415, 469
RruI TCGCGA 1 cut(s) 18
Sau3AI GATC 3 cut(s) 233, 415, 469
SchI GAGTC 1 cut(s) 29
SduI GDGCHC 1 cut(s) 253
SetI ASST 1 cut(s) 43
SfaNI GCATC 1 cut(s) 420
SfcI CTRYAG 1 cut(s) 55
Sse9I AATT 8 cut(s) 61, 80, 137, 150, 207, 269, 389, 451
SsiI CCGC 2 cut(s) 282, 464
SspI AATATT 1 cut(s) 48
SspMI CTAG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 193, 545
TasI AATT 8 cut(s) 61, 80, 137, 150, 207, 269, 389, 451
TfiI GAWTC 1 cut(s) 288
TscAI CASTG 1 cut(s) 280
TspRI CASTG 1 cut(s) 280
Van91I CCANNNNNTGG 1 cut(s) 326
VneI GTGCAC 1 cut(s) 249
XapI RAATTY 2 cut(s) 207, 389
XmiI GTMKAC 1 cut(s) 528
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.