Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003288

Physical Location & Seq

Genomic Coordinates Reverse (-)

13471844 .. 13473964

Gene Structure 2121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g11240.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCATATCTCCATCCGCCATGTCCGTCGCCCACTTCCCACCCAACCTCACGTCCTGCATTCAAACCATCCATCACTGTCACTACGTCGTCTCGTCATCTCCCTTCAACCCAAAAGCCCACAGCCAATTCCAACAACTGGGTCTCGGAGTTCCGGTCCAAGTCTTTAAATTTAGTGCTTTCAGGGGCTCTCACTCTCGGACTCTCTCTCTCAGGAGCAGGAATTGCAGAGGCAAAAGTTGGAGTGAACAAACCAGAATTGCTTCCCAAAGAGTTTAGCCCTGTAATTGATGTAGCTGGCTTCCTCTCTGATGGCCAGGAGAAAAGACTAGCCGAAGAGATTGCTGATATAGAGAAGTATACTGGATACAAGCTGAGGGTTCTTGCCCAGAACTATCCTGACACACCAGGTTTAGCGATTAAAGATTTCTGGCGAGTGGATGATAGAACTATTGTCTTTGTTGCTGATCCGACCTTTGGCAATATACTAAACTTCAACGTGGGAGCTTCAGTTGATCTAGATGTTCCACGCAGCTTTTGGAGCCGCTTGGCAGGGAAGTATGGAAATATGTTTTACTGGAAAGAGAAGGGAGAAGATGGAGCGATTGAATCTGCGGTGATGGCAATATCTAGCTGCTTGAAAGAACCCGTAGACGCAAATAATTGCTCTGAGGTAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0031977 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044436 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPM_phosphatase

Protein Analysis

227

Amino Acids

24.62

Weight (kDa)

6.32

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52970 AT5G52970
fragaria_vesca	FvH4_6g16320
malus_domestica	MD12G1113500.v1.1
prunus_persica	Prupe.6G232400_v2.0.a1 Prupe.6G232400_v2.0.a1
pyrus_communis	pycom12g11240
rosa_chinensis	RchiOBHm_Chr3g0470171 RchiOBHm_Chr6g0296991
rosa_laevigata	RLG00000002142 RLG00000013529 RLG00000013767 RLG00000014335 RLG00000018311 RLG00000023700 RLG00000024291 RLG00000036706
rosa_multiflora	Rmu_sc0001548.1_g000020 Rmu_sc0005600.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032810 Rroxscaffold_6G00411090 Rroxscaffold_6G00411120
rosa_rugosa	Rorug03G0107500 Rorug07G0274800
rosa_samantha	Rh2CG519300 Rh3AG156600 Rh3BG180700 Rh3CG171500 Rh3DG194200
rosa_wichuraiana	Rw0G005420 Rw0G008560 Rw3G014850 Rw3G014880 Rw4G006390 Rw6G009380 Rw7G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	138
AccI	GTMKAC	2 cut(s)	359, 651
AciI	CCGC	3 cut(s)	17, 544, 614
AclWI	GGATC	1 cut(s)	461
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	492
AfiI	CCNNNNNNNGG	2 cut(s)	138, 476
AgsI	TTSAA	5 cut(s)	64, 108, 496, 608, 640
AjiI	CACGTC	1 cut(s)	53
AjnI	CCWGG	2 cut(s)	315, 406
AluBI	AGCT	5 cut(s)	296, 373, 506, 534, 633
AluI	AGCT	5 cut(s)	296, 373, 506, 534, 633
Alw26I	GTCTC	2 cut(s)	96, 148
AlwI	GGATC	1 cut(s)	461
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	531, 633
ApoI	RAATTY	1 cut(s)	169
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	628
AvaII	GGWCC	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	190
BbvCI	CCTCAGC	1 cut(s)	374
BbvI	GCAGC	2 cut(s)	543, 620
BccI	CCATC	6 cut(s)	21, 76, 80, 305, 590, 613
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciT130I	CCWGG	2 cut(s)	317, 408
BciVI	GTATCC	1 cut(s)	359
BcoDI	GTCTC	2 cut(s)	96, 148
BfaI	CTAG	3 cut(s)	329, 518, 630
BfuI	GTATCC	1 cut(s)	359
BisI	GCNGC	3 cut(s)	532, 544, 634
BlsI	GCNGC	3 cut(s)	533, 545, 635
Bme1390I	CCNGG	2 cut(s)	317, 408
Bme18I	GGWCC	1 cut(s)	156
BmgBI	CACGTC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	542
BmrFI	CCNGG	2 cut(s)	317, 408
BmrI	ACTGGG	1 cut(s)	148
BmuI	ACTGGG	1 cut(s)	148
Bpu10I	CCTNAGC	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	148
BsaWI	WCCGGW	1 cut(s)	153
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 495, 525
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 476
Bse1I	ACTGG	3 cut(s)	143, 367, 581
BseBI	CCWGG	2 cut(s)	317, 408
BseGI	GGATG	3 cut(s)	13, 68, 445
BseLI	CCNNNNNNNGG	2 cut(s)	138, 476
BseMII	CTCAG	3 cut(s)	225, 365, 660
BseNI	ACTGG	3 cut(s)	143, 367, 581
BseXI	GCAGC	2 cut(s)	543, 620
BshFI	GGCC	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	154
BslI	CCNNNNNNNGG	2 cut(s)	138, 476
BsmAI	GTCTC	2 cut(s)	96, 148
BsmBI	CGTCTC	1 cut(s)	96
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	315
Bso31I	GGTCTC	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	466, 514
BspACI	CCGC	3 cut(s)	17, 544, 614
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	3 cut(s)	224, 366, 661
BspLI	GGNNCC	1 cut(s)	542
BspPI	GGATC	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	148
BsrI	ACTGG	3 cut(s)	143, 367, 581
BssMI	GATC	2 cut(s)	466, 514
BssNAI	GTATAC	1 cut(s)	360
Bst1107I	GTATAC	1 cut(s)	360
Bst2UI	CCWGG	2 cut(s)	317, 408
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	330
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	3 cut(s)	211, 374, 669
BstF5I	GGATG	3 cut(s)	13, 68, 445
BstKTI	GATC	2 cut(s)	469, 517
BstMAI	GTCTC	2 cut(s)	96, 148
BstMBI	GATC	2 cut(s)	466, 514
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 540, 620
BstNI	CCWGG	2 cut(s)	317, 408
BstSCI	CCNGG	2 cut(s)	315, 406
BstV1I	GCAGC	2 cut(s)	543, 620
BstZ17I	GTATAC	1 cut(s)	360
BsuI	GTATCC	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	315
BtrI	CACGTC	1 cut(s)	53
BtsCI	GGATG	3 cut(s)	13, 68, 445
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	298
Cfr13I	GGNCC	1 cut(s)	156
CseI	GACGC	1 cut(s)	662
CsiI	ACCWGGT	1 cut(s)	406
CviAII	CATG	1 cut(s)	21
DdeI	CTNAG	3 cut(s)	211, 374, 669
DpnI	GATC	2 cut(s)	468, 516
DpnII	GATC	2 cut(s)	466, 514
DraI	TTTAAA	1 cut(s)	168
EaeI	YGGCCR	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
EciI	GGCGGA	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	190
Eco31I	GGTCTC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	492
EcoRII	CCWGG	2 cut(s)	315, 406
EcoT38I	GRGCYC	1 cut(s)	190
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	1 cut(s)	24
FaiI	YATR	7 cut(s)	7, 22, 350, 360, 485, 561, 569
FatI	CATG	1 cut(s)	20
FblI	GTMKAC	2 cut(s)	359, 651
Fnu4HI	GCNGC	3 cut(s)	532, 544, 634
FokI	GGATG	2 cut(s)	55, 452
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	3 cut(s)	532, 544, 634
FspBI	CTAG	3 cut(s)	329, 518, 630
GluI	GCNGC	3 cut(s)	532, 544, 634
HaeIII	GGCC	1 cut(s)	315
HapII	CCGG	1 cut(s)	154
HgaI	GACGC	1 cut(s)	662
Hin1II	CATG	1 cut(s)	24
HinfI	GANTC	2 cut(s)	201, 608
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	1 cut(s)	628
Hpy166II	GTNNAC	3 cut(s)	247, 360, 652
Hpy188I	TCNGA	5 cut(s)	148, 200, 310, 471, 670
Hpy188III	TCNNGA	3 cut(s)	213, 398, 518
Hpy8I	GTNNAC	3 cut(s)	247, 360, 652
Hpy99I	CGWCG	2 cut(s)	31, 91
HpyAV	CCTTC	2 cut(s)	114, 580
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	3 cut(s)	52, 86, 498
HpyCH4V	TGCA	2 cut(s)	59, 227
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 540, 620
HpyF3I	CTNAG	3 cut(s)	211, 374, 669
HpySE526I	ACGT	3 cut(s)	52, 86, 498
Hsp92II	CATG	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	466, 514
LmnI	GCTCC	4 cut(s)	215, 503, 540, 599
Lsp1109I	GCAGC	2 cut(s)	543, 620
MabI	ACCWGGT	1 cut(s)	406
MaeI	CTAG	3 cut(s)	329, 518, 630
MaeII	ACGT	3 cut(s)	52, 86, 498
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	2 cut(s)	468, 516
MboI	GATC	2 cut(s)	466, 514
MboII	GAAGA	2 cut(s)	347, 605
MhlI	GDGCHC	1 cut(s)	190
MlsI	TGGCCA	1 cut(s)	315
MluCI	AATT	6 cut(s)	127, 169, 222, 257, 285, 661
MluNI	TGGCCA	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	195
MmeI	TCCRAC	3 cut(s)	156, 220, 494
MnlI	CCTC	5 cut(s)	58, 223, 314, 369, 664
Mox20I	TGGCCA	1 cut(s)	315
MroXI	GAANNNNTTC	1 cut(s)	261
MscI	TGGCCA	1 cut(s)	315
MseI	TTAA	2 cut(s)	167, 420
Msp20I	TGGCCA	1 cut(s)	315
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	2 cut(s)	317, 408
Mva1269I	GAATGC	1 cut(s)	59
MvaI	CCWGG	2 cut(s)	317, 408
MwoI	GCNNNNNNNGC	3 cut(s)	224, 540, 620
NdeII	GATC	2 cut(s)	466, 514
NlaIII	CATG	1 cut(s)	24
NlaIV	GGNNCC	1 cut(s)	542
NmuCI	GTSAC	1 cut(s)	79
PctI	GAATGC	1 cut(s)	59
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	608
PflMI	CCANNNNNTGG	1 cut(s)	138
PkrI	GCNGC	3 cut(s)	533, 545, 635
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
Psp6I	CCWGG	2 cut(s)	315, 406
PspGI	CCWGG	2 cut(s)	315, 406
PspN4I	GGNNCC	1 cut(s)	542
PspPI	GGNCC	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	167, 420
SatI	GCNGC	3 cut(s)	532, 544, 634
Sau3AI	GATC	2 cut(s)	466, 514
Sau96I	GGNCC	1 cut(s)	156
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	2 cut(s)	317, 408
SduI	GDGCHC	1 cut(s)	190
SexAI	ACCWGGT	1 cut(s)	406
SinI	GGWCC	1 cut(s)	156
Sse9I	AATT	6 cut(s)	127, 169, 222, 257, 285, 661
SsiI	CCGC	3 cut(s)	17, 544, 614
SspMI	CTAG	3 cut(s)	329, 518, 630
StyD4I	CCNGG	2 cut(s)	315, 406
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	3 cut(s)	55, 89, 501
TasI	AATT	6 cut(s)	127, 169, 222, 257, 285, 661
TauI	GCSGC	1 cut(s)	546
TfiI	GAWTC	1 cut(s)	608
Tru1I	TTAA	2 cut(s)	167, 420
Tru9I	TTAA	2 cut(s)	167, 420
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	2 cut(s)	531, 633
Tsp45I	GTSAC	1 cut(s)	79
TspGWI	ACGGA	1 cut(s)	15
TspRI	CASTG	1 cut(s)	82
Van91I	CCANNNNNTGG	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	156
XapI	RAATTY	1 cut(s)	169
XbaI	TCTAGA	1 cut(s)	517
XcmI	CCANNNNNNNNNTGG	1 cut(s)	534
XmiI	GTMKAC	2 cut(s)	359, 651
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	3 cut(s)	329, 518, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.