Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003288

Physical Location & Seq

Genomic Coordinates Reverse (-)

33677568 .. 33680820

Gene Structure 3253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00411120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAGAAGTACTTTGGGAACGCTTACAGAGGAGACCCGGGGTCCCACACGCCGACCCGGAAAGTTTTGGATTGTTGGCATGACAAGGCAATGCTGTTTGAGCAGCATCACTGGAAAAGGGCACTGAAGAAAGGGCAGCCCTATCAATTTAAGTGGAATGAGTACATGGACAAGGACCTCAGAGATGCCTACTATATCAACTGGCCGGTGATACGGTTTATCATGCTTCTTTTGTACTGCAAGCTTAAATCAAATCTGCTCAATTTCAGGCTTTTCCTTATTGTTGTTGAATTTTGTGTCTGTGTAGGAGTTGCTAATGCATTAGTTGGGGTGAACAAGCCAGAATTGCTTCCAAAGGAGTTCAGTCCAGTGATTGATGTAGCCGGCTTCCTCTCCGATGGTCAGGAGAAAAGGCTAGCTCAGGAGATTGCTAATATAGAGAAGGATACTGGATTCAAGTTGAGGGTTCTTGCTCAGAACTATCCTGACACGCCAGTTACAATGTATCGATATTGTGTAGGCTTGGCGATTAAAGATTTTTGGCAAGTGGATGATAGAACTATTGTGTTTGTTGCTGATCCCACATTTGGCAATATACTAAACTTCAATGTGGGAGCTTTGGTTGATCTAGATGTTCCACGCAGCTTTTGGAGTCGTCTGGCTGGGAAGTGGGAAGGGGAAGATGGATCAATTGAAGCTGCTGTAACTGCAATATCTTACTGCTTGAGAGAACCTGTAGGCTCTAATAATTGCTCCGAGGTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0031977 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044436 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPM_phosphatase

Protein Analysis

255

Amino Acids

29.27

Weight (kDa)

6.44

Isoelectric Point (pI)

27.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52970 AT5G52970
fragaria_vesca	FvH4_6g16320
malus_domestica	MD12G1113500.v1.1
prunus_persica	Prupe.6G232400_v2.0.a1 Prupe.6G232400_v2.0.a1
pyrus_communis	pycom12g11240
rosa_chinensis	RchiOBHm_Chr3g0470171 RchiOBHm_Chr6g0296991
rosa_laevigata	RLG00000002142 RLG00000013529 RLG00000013767 RLG00000014335 RLG00000018311 RLG00000023700 RLG00000024291 RLG00000036706
rosa_multiflora	Rmu_sc0001548.1_g000020 Rmu_sc0005600.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032810 Rroxscaffold_6G00411090 Rroxscaffold_6G00411120
rosa_rugosa	Rorug03G0107500 Rorug07G0274800
rosa_samantha	Rh2CG519300 Rh3AG156600 Rh3BG180700 Rh3CG171500 Rh3DG194200
rosa_wichuraiana	Rw0G005420 Rw0G008560 Rw3G014850 Rw3G014880 Rw4G006390 Rw6G009380 Rw7G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	572, 694
AcoI	YGGCCR	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	146
AfaI	GTAC	3 cut(s)	11, 164, 236
AfiI	CCNNNNNNNGG	1 cut(s)	587
AgsI	TTSAA	4 cut(s)	290, 457, 607, 695
AhdI	GACNNNNNGTC	1 cut(s)	40
AluBI	AGCT	5 cut(s)	244, 419, 617, 645, 698
AluI	AGCT	5 cut(s)	244, 419, 617, 645, 698
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	2 cut(s)	572, 694
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	1 cut(s)	203
ApeKI	GCWGC	4 cut(s)	103, 136, 642, 698
ApoI	RAATTY	1 cut(s)	290
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	42, 175
AsuC2I	CCSGG	3 cut(s)	38, 39, 58
AsuHPI	GGTGA	2 cut(s)	220, 343
AsuNHI	GCTAGC	1 cut(s)	415
AvaI	CYCGRG	1 cut(s)	37
AvaII	GGWCC	2 cut(s)	42, 175
BaeGI	GKGCMC	1 cut(s)	124
BbvI	GCAGC	4 cut(s)	115, 148, 654, 685
BccI	CCATC	2 cut(s)	392, 677
BciVI	GTATCC	1 cut(s)	439
BcnI	CCSGG	3 cut(s)	38, 39, 58
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	2 cut(s)	416, 629
BfmI	CTRYAG	1 cut(s)	735
BfuI	GTATCC	1 cut(s)	439
BisI	GCNGC	4 cut(s)	104, 137, 643, 699
BlsI	GCNGC	4 cut(s)	105, 138, 644, 700
BmcAI	AGTACT	1 cut(s)	11
Bme1390I	CCNGG	3 cut(s)	38, 39, 58
Bme18I	GGWCC	2 cut(s)	42, 175
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	42, 175
BmiI	GGNNCC	2 cut(s)	43, 44
BmrFI	CCNGG	3 cut(s)	38, 39, 58
BmsI	GCATC	2 cut(s)	115, 175
BmtI	GCTAGC	1 cut(s)	419
Bpu10I	CCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	745
BpuMI	CCSGG	3 cut(s)	38, 39, 58
Bsa29I	ATCGAT	1 cut(s)	508
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	3 cut(s)	37, 38, 756
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
Bse118I	RCCGGY	2 cut(s)	205, 383
Bse1I	ACTGG	5 cut(s)	116, 206, 368, 454, 494
Bse3DI	GCAATG	1 cut(s)	96
BseCI	ATCGAT	1 cut(s)	508
BseDI	CCNNGG	3 cut(s)	37, 38, 756
BseGI	GGATG	1 cut(s)	556
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	3 cut(s)	193, 434, 488
BseNI	ACTGG	5 cut(s)	116, 206, 368, 454, 494
BseRI	GAGGAG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	124
BseXI	GCAGC	4 cut(s)	115, 148, 654, 685
BseYI	CCCAGC	1 cut(s)	662
BshFI	GGCC	1 cut(s)	205
BshVI	ATCGAT	1 cut(s)	508
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	4 cut(s)	38, 58, 206, 384
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	587
BsmAI	GTCTC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	205
Bso31I	GGTCTC	1 cut(s)	27
BsoBI	CYCGRG	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	3 cut(s)	577, 625, 686
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	3 cut(s)	192, 433, 487
BspDI	ATCGAT	1 cut(s)	508
BspLI	GGNNCC	2 cut(s)	43, 44
BspOI	GCTAGC	1 cut(s)	419
BspPI	GGATC	2 cut(s)	572, 694
BspTNI	GGTCTC	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	96
BsrFI	RCCGGY	2 cut(s)	205, 383
BsrI	ACTGG	5 cut(s)	116, 206, 368, 454, 494
BssAI	RCCGGY	2 cut(s)	205, 383
BssECI	CCNNGG	3 cut(s)	37, 38, 756
BssMI	GATC	3 cut(s)	577, 625, 686
Bst4CI	ACNGT	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	242, 385, 417
BstDEI	CTNAG	3 cut(s)	179, 420, 474
BstF5I	GGATG	1 cut(s)	556
BstKTI	GATC	3 cut(s)	580, 628, 689
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	3 cut(s)	577, 625, 686
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 346, 707
BstSCI	CCNGG	3 cut(s)	36, 37, 56
BstSFI	CTRYAG	1 cut(s)	735
BstSLI	GKGCMC	1 cut(s)	124
BstV1I	GCAGC	4 cut(s)	115, 148, 654, 685
Bsu15I	ATCGAT	1 cut(s)	508
BsuI	GTATCC	1 cut(s)	439
BsuRI	GGCC	1 cut(s)	205
BsuTUI	ATCGAT	1 cut(s)	508
BtsCI	GGATG	1 cut(s)	556
BtsIMutI	CAGTG	3 cut(s)	109, 122, 375
Cac8I	GCNNGC	3 cut(s)	242, 385, 417
Cfr10I	RCCGGY	2 cut(s)	205, 383
Cfr13I	GGNCC	2 cut(s)	42, 175
Cfr9I	CCCGGG	1 cut(s)	37
ClaI	ATCGAT	1 cut(s)	508
Csp6I	GTAC	3 cut(s)	10, 163, 235
CspCI	CAANNNNNGTGG	2 cut(s)	134, 169
CviAII	CATG	3 cut(s)	80, 166, 223
CviQI	GTAC	3 cut(s)	10, 163, 235
DdeI	CTNAG	3 cut(s)	179, 420, 474
DpnI	GATC	3 cut(s)	579, 627, 688
DpnII	GATC	3 cut(s)	577, 625, 686
DriI	GACNNNNNGTC	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	203
Eam1105I	GACNNNNNGTC	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	42, 175
Eco57I	CTGAAG	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	37
EcoO109I	RGGNCCY	2 cut(s)	42, 175
EcoT22I	ATGCAT	1 cut(s)	322
FaeI	CATG	3 cut(s)	83, 169, 226
FaiI	YATR	6 cut(s)	81, 167, 195, 224, 437, 596
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	3 cut(s)	79, 165, 222
Fnu4HI	GCNGC	4 cut(s)	104, 137, 643, 699
FokI	GGATG	1 cut(s)	563
Fsp4HI	GCNGC	4 cut(s)	104, 137, 643, 699
FspBI	CTAG	2 cut(s)	416, 629
GluI	GCNGC	4 cut(s)	104, 137, 643, 699
GsaI	CCCAGC	1 cut(s)	666
HaeIII	GGCC	1 cut(s)	205
HapII	CCGG	4 cut(s)	38, 58, 206, 384
Hin1II	CATG	3 cut(s)	83, 169, 226
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	2 cut(s)	453, 652
HpaII	CCGG	4 cut(s)	38, 58, 206, 384
HphI	GGTGA	2 cut(s)	220, 343
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	4 cut(s)	182, 397, 477, 757
Hpy188III	TCNNGA	4 cut(s)	404, 422, 485, 629
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	2 cut(s)	436, 668
HpyCH4III	ACNGT	1 cut(s)	216
HpyCH4V	TGCA	3 cut(s)	240, 320, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 346, 707
HpyF3I	CTNAG	3 cut(s)	179, 420, 474
Hsp92II	CATG	3 cut(s)	83, 169, 226
KflI	GGGWCCC	1 cut(s)	42
KroI	GCCGGC	1 cut(s)	383
KroNI	GCCGGC	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	577, 625, 686
LmnI	GCTCC	2 cut(s)	614, 758
Lsp1109I	GCAGC	4 cut(s)	115, 148, 654, 685
LweI	GCATC	2 cut(s)	115, 175
MaeI	CTAG	2 cut(s)	416, 629
MaeIII	GTNAC	2 cut(s)	496, 703
MalI	GATC	3 cut(s)	579, 627, 688
MboI	GATC	3 cut(s)	577, 625, 686
MboII	GAAGA	2 cut(s)	139, 692
MfeI	CAATTG	1 cut(s)	690
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	7 cut(s)	146, 262, 290, 344, 690, 748, 763
MlyI	GAGTC	1 cut(s)	661
MnlI	CCTC	5 cut(s)	23, 188, 401, 456, 751
Mph1103I	ATGCAT	1 cut(s)	322
MroNI	GCCGGC	1 cut(s)	383
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	4 cut(s)	150, 246, 531, 766
MspI	CCGG	4 cut(s)	38, 58, 206, 384
MspR9I	CCNGG	3 cut(s)	38, 39, 58
MunI	CAATTG	1 cut(s)	690
MwoI	GCNNNNNNNGC	3 cut(s)	100, 346, 707
NaeI	GCCGGC	1 cut(s)	385
NciI	CCSGG	3 cut(s)	38, 39, 58
NdeII	GATC	3 cut(s)	577, 625, 686
NgoMIV	GCCGGC	1 cut(s)	383
NheI	GCTAGC	1 cut(s)	415
NlaIII	CATG	3 cut(s)	83, 169, 226
NlaIV	GGNNCC	2 cut(s)	43, 44
NsiI	ATGCAT	1 cut(s)	322
PdiI	GCCGGC	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	453
PkrI	GCNGC	4 cut(s)	105, 138, 644, 700
PleI	GAGTC	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	660
PpuMI	RGGWCCY	2 cut(s)	42, 175
Psp5II	RGGWCCY	2 cut(s)	42, 175
PspFI	CCCAGC	1 cut(s)	662
PspN4I	GGNNCC	2 cut(s)	43, 44
PspPI	GGNCC	2 cut(s)	42, 175
PspPPI	RGGWCCY	2 cut(s)	42, 175
RsaI	GTAC	3 cut(s)	11, 164, 236
RsaNI	GTAC	3 cut(s)	10, 163, 235
SaqAI	TTAA	4 cut(s)	150, 246, 531, 766
SatI	GCNGC	4 cut(s)	104, 137, 643, 699
Sau3AI	GATC	3 cut(s)	577, 625, 686
Sau96I	GGNCC	2 cut(s)	42, 175
ScaI	AGTACT	1 cut(s)	11
SchI	GAGTC	1 cut(s)	661
ScrFI	CCNGG	3 cut(s)	38, 39, 58
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	8 cut(s)	180, 246, 421, 619, 647, 700, 736, 762
SfaNI	GCATC	2 cut(s)	115, 175
SfcI	CTRYAG	1 cut(s)	735
SinI	GGWCC	2 cut(s)	42, 175
SmaI	CCCGGG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	724
SmoI	CTYRAG	1 cut(s)	724
Sse9I	AATT	7 cut(s)	146, 262, 290, 344, 690, 748, 763
SspMI	CTAG	2 cut(s)	416, 629
StyD4I	CCNGG	3 cut(s)	36, 37, 56
TaaI	ACNGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	508
TasI	AATT	7 cut(s)	146, 262, 290, 344, 690, 748, 763
TatI	WGTACW	3 cut(s)	9, 162, 234
TfiI	GAWTC	1 cut(s)	453
Tru1I	TTAA	4 cut(s)	150, 246, 531, 766
Tru9I	TTAA	4 cut(s)	150, 246, 531, 766
TscAI	CASTG	3 cut(s)	116, 129, 375
TseI	GCWGC	4 cut(s)	103, 136, 642, 698
TspMI	CCCGGG	1 cut(s)	37
TspRI	CASTG	3 cut(s)	116, 129, 375
VpaK11BI	GGWCC	2 cut(s)	42, 175
XapI	RAATTY	1 cut(s)	290
XbaI	TCTAGA	1 cut(s)	628
XcmI	CCANNNNNNNNNTGG	1 cut(s)	645
XmaI	CCCGGG	1 cut(s)	37
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	2 cut(s)	416, 629
ZrmI	AGTACT	1 cut(s)	11
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.