Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003288

Physical Location & Seq

Genomic Coordinates Forward (+)

10251466 .. 10252607

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCATTTCTCCTTCCTCCGTGTTCATCTTCCACTTCCCAAACAACCTCAACCATTACATCCTCGTCAAATCTCTCTTCAACTCTAACTCCATCCAAATCCAGCAACGACTGGATTTCGAAATTTCGCTCCAAATCTTTGAGTTTCGCGCTCTCCGGAGCTCTCACACTCGGATTATCTCTCTCAGGCGTTGGAGCTGCTCATGCATTAGTCGGGGTAAACAAGCCAGAATTGCTTCCAAAAGAGTTCAGTCCTGTCATTGATGTAGCTGGCTTCCTCTCTGATGGCCAGGAGAAAAGGCTAGCTCAAGAGATTGCTAATATAGAGAAGGATACTGGATTCAAGTTGAGGGTTCTTGCTCAGAACTACCCTGACACACCAGGTTTGGCGATCAAAGATTTCTGGCAAGTGGATGATAGAACTATTGTCTTTGTTGCTGATCCCACTTTTGGCAATATACTAAACTTCAATGTGGGAGCTTTGATTGATCTAGATGTTCCACGTAGCTTTTGGAGTCGTCTGGCTGGGAAGTATGGGAATATGTTTTATTGGAAAGAGAAGGGGGAAGATGTATCAATTGAAGCAGCTGTAACAGCAATATCTAGCTGTTTGAGAGAACCTGTAGGCTCTGATAATTGCTCCGAGGTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0031977 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044436 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPM_phosphatase

Protein Analysis

218

Amino Acids

23.39

Weight (kDa)

5.25

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52970 AT5G52970
fragaria_vesca	FvH4_6g16320
malus_domestica	MD12G1113500.v1.1
prunus_persica	Prupe.6G232400_v2.0.a1 Prupe.6G232400_v2.0.a1
pyrus_communis	pycom12g11240
rosa_chinensis	RchiOBHm_Chr3g0470171 RchiOBHm_Chr6g0296991
rosa_laevigata	RLG00000002142 RLG00000013529 RLG00000013767 RLG00000014335 RLG00000018311 RLG00000023700 RLG00000024291 RLG00000036706
rosa_multiflora	Rmu_sc0001548.1_g000020 Rmu_sc0005600.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032810 Rroxscaffold_6G00411090 Rroxscaffold_6G00411120
rosa_rugosa	Rorug03G0107500 Rorug07G0274800
rosa_samantha	Rh2CG519300 Rh3AG156600 Rh3BG180700 Rh3CG171500 Rh3DG194200
rosa_wichuraiana	Rw0G005420 Rw0G008560 Rw3G014850 Rw3G014880 Rw4G006390 Rw6G009380 Rw7G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	149
AccIII	TCCGGA	1 cut(s)	155
AclWI	GGATC	1 cut(s)	434
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgsI	TTSAA	4 cut(s)	81, 343, 469, 581
AjnI	CCWGG	2 cut(s)	288, 379
AluBI	AGCT	8 cut(s)	161, 197, 269, 305, 479, 507, 587, 606
AluI	AGCT	8 cut(s)	161, 197, 269, 305, 479, 507, 587, 606
Alw21I	GWGCWC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	434
Aor13HI	TCCGGA	1 cut(s)	155
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	2 cut(s)	197, 584
ApoI	RAATTY	1 cut(s)	122
Asp700I	GAANNNNTTC	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	151
AsuII	TTCGAA	1 cut(s)	119
AsuNHI	GCTAGC	1 cut(s)	301
BalI	TGGCCA	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	184, 596
BccI	CCATC	2 cut(s)	100, 278
BciT130I	CCWGG	2 cut(s)	290, 381
BciVI	GTATCC	1 cut(s)	325
BfaI	CTAG	3 cut(s)	302, 491, 603
BfmI	CTRYAG	1 cut(s)	621
BfuI	GTATCC	1 cut(s)	325
BisI	GCNGC	2 cut(s)	198, 585
BlsI	GCNGC	2 cut(s)	199, 586
Bme1390I	CCNGG	2 cut(s)	290, 381
BmrFI	CCNGG	2 cut(s)	290, 381
BmtI	GCTAGC	1 cut(s)	305
Bpu14I	TTCGAA	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	503
BsaJI	CCNNGG	1 cut(s)	642
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse1I	ACTGG	2 cut(s)	116, 340
BseAI	TCCGGA	1 cut(s)	155
BseBI	CCWGG	2 cut(s)	290, 381
BseDI	CCNNGG	1 cut(s)	642
BseGI	GGATG	3 cut(s)	59, 92, 418
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMII	CTCAG	2 cut(s)	198, 374
BseNI	ACTGG	2 cut(s)	116, 340
BseXI	GCAGC	2 cut(s)	184, 596
BseYI	CCCAGC	1 cut(s)	524
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	449
BsnI	GGCC	1 cut(s)	288
Bsp119I	TTCGAA	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp13I	TCCGGA	1 cut(s)	155
Bsp143I	GATC	3 cut(s)	390, 439, 487
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	2 cut(s)	197, 373
BspEI	TCCGGA	1 cut(s)	155
BspFNI	CGCG	1 cut(s)	149
BspOI	GCTAGC	1 cut(s)	305
BspPI	GGATC	1 cut(s)	434
BspT104I	TTCGAA	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	116, 340
BssECI	CCNNGG	1 cut(s)	642
BssMI	GATC	3 cut(s)	390, 439, 487
Bst2UI	CCWGG	2 cut(s)	290, 381
Bst6I	CTCTTC	1 cut(s)	82
BstBAI	YACGTR	1 cut(s)	503
BstBI	TTCGAA	1 cut(s)	119
BstC8I	GCNNGC	2 cut(s)	271, 303
BstDEI	CTNAG	2 cut(s)	184, 360
BstF5I	GGATG	3 cut(s)	59, 92, 418
BstFNI	CGCG	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	3 cut(s)	393, 442, 490
BstMBI	GATC	3 cut(s)	390, 439, 487
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 232, 593
BstNI	CCWGG	2 cut(s)	290, 381
BstSCI	CCNGG	2 cut(s)	288, 379
BstSFI	CTRYAG	1 cut(s)	621
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	2 cut(s)	184, 596
BsuI	GTATCC	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	288
BtsCI	GGATG	3 cut(s)	59, 92, 418
Cac8I	GCNNGC	2 cut(s)	271, 303
CfoI	GCGC	1 cut(s)	151
CsiI	ACCWGGT	1 cut(s)	379
CviAII	CATG	1 cut(s)	203
DdeI	CTNAG	2 cut(s)	184, 360
DpnI	GATC	3 cut(s)	392, 441, 489
DpnII	GATC	3 cut(s)	390, 439, 487
EaeI	YGGCCR	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	161
EcoRII	CCWGG	2 cut(s)	288, 379
EcoT22I	ATGCAT	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	163
FaeI	CATG	1 cut(s)	206
FaiI	YATR	5 cut(s)	204, 323, 458, 534, 542
FatI	CATG	1 cut(s)	202
Fnu4HI	GCNGC	2 cut(s)	198, 585
FokI	GGATG	3 cut(s)	46, 79, 425
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	2 cut(s)	198, 585
FspBI	CTAG	3 cut(s)	302, 491, 603
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	2 cut(s)	198, 585
GsaI	CCCAGC	1 cut(s)	528
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	1 cut(s)	156
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	2 cut(s)	339, 514
HpaII	CCGG	1 cut(s)	156
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	5 cut(s)	173, 283, 363, 631, 643
Hpy188III	TCNNGA	3 cut(s)	156, 308, 491
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	3 cut(s)	23, 322, 553
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 232, 593
HpyF3I	CTNAG	2 cut(s)	184, 360
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	1 cut(s)	149
Kpn2I	TCCGGA	1 cut(s)	155
Kzo9I	GATC	3 cut(s)	390, 439, 487
LmnI	GCTCC	5 cut(s)	134, 158, 194, 476, 644
Lsp1109I	GCAGC	2 cut(s)	184, 596
MabI	ACCWGGT	1 cut(s)	379
MaeI	CTAG	3 cut(s)	302, 491, 603
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	3 cut(s)	392, 441, 489
MboI	GATC	3 cut(s)	390, 439, 487
MboII	GAAGA	3 cut(s)	21, 69, 578
MfeI	CAATTG	1 cut(s)	576
MhlI	GDGCHC	1 cut(s)	163
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	4 cut(s)	122, 230, 576, 634
MluNI	TGGCCA	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	523
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	6 cut(s)	27, 58, 73, 287, 342, 637
Mox20I	TGGCCA	1 cut(s)	288
Mph1103I	ATGCAT	1 cut(s)	208
MroI	TCCGGA	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	234
MscI	TGGCCA	1 cut(s)	288
Msp20I	TGGCCA	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	2 cut(s)	290, 381
MunI	CAATTG	1 cut(s)	576
MvaI	CCWGG	2 cut(s)	290, 381
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	3 cut(s)	203, 232, 593
NdeII	GATC	3 cut(s)	390, 439, 487
NheI	GCTAGC	1 cut(s)	301
NlaIII	CATG	1 cut(s)	206
NsiI	ATGCAT	1 cut(s)	208
NspV	TTCGAA	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	339
PkrI	GCNGC	2 cut(s)	199, 586
PleI	GAGTC	1 cut(s)	522
PpsI	GAGTC	1 cut(s)	522
Ppu21I	YACGTR	1 cut(s)	503
Psp124BI	GAGCTC	1 cut(s)	163
Psp6I	CCWGG	2 cut(s)	288, 379
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	2 cut(s)	288, 379
PvuII	CAGCTG	1 cut(s)	587
SacI	GAGCTC	1 cut(s)	163
SatI	GCNGC	2 cut(s)	198, 585
Sau3AI	GATC	3 cut(s)	390, 439, 487
SchI	GAGTC	1 cut(s)	523
ScrFI	CCNGG	2 cut(s)	290, 381
SduI	GDGCHC	1 cut(s)	163
SexAI	ACCWGGT	1 cut(s)	379
SfcI	CTRYAG	1 cut(s)	621
SfuI	TTCGAA	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
Sse9I	AATT	4 cut(s)	122, 230, 576, 634
SspMI	CTAG	3 cut(s)	302, 491, 603
SstI	GAGCTC	1 cut(s)	163
StyD4I	CCNGG	2 cut(s)	288, 379
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	1 cut(s)	119
TasI	AATT	4 cut(s)	122, 230, 576, 634
TfiI	GAWTC	1 cut(s)	339
TseI	GCWGC	2 cut(s)	197, 584
TspDTI	ATGAA	1 cut(s)	15
TspGWI	ACGGA	1 cut(s)	9
XapI	RAATTY	1 cut(s)	122
XbaI	TCTAGA	1 cut(s)	490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	507
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	3 cut(s)	302, 491, 603
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.