RLG00000014335

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003288
Physical Location & Seq
Forward (+)
51630755 .. 51633784
3030 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014335

Sequence Viewer

Length: 1014 bp
ATGATTATTATTATCGGGTCATGGCTTCATTTGATGAGGAGCAAGATTTATTGCTTCGCATGTATACGAATAAATCACCTCTTGGCGGAGTTGGATGACAATGAGGACGACGAGGCCGAATCGAGGCGTAAAGGAGCAGTTCCTGGCCATATAGTTATTAATCGTCCTCGACAAGAAGCTGGATATAATCTATACATGGACTACTTTGCTGAGGTGGAAAATCGGAATCAAAGTGATGCTTTAGAGAAAGATATTGATGTTAAAAAATGGACTGATAATGGTAGAAGTTCAACTAAACCACGAAAAAAAAATTACTCAAGTGAAGGATATGAATCAACCTCTCGCACATCACAATCGTCATGTACATTACCATTTGATGTCGATTTGAATGCATATGAAGACGAACAAGAGCTGTTTAGTGATGAACTTGCCTCACCTCATCGGCCTATTGGTGTAAAGAAAGCAAAGCTGGAAAGGAAAGAGTTGAATGAGAAGACCAAGATTGCTCAACAAGTGAAAGAATCCAACCACGAACTAAAGGAGTTACTTGAAAAAAGTTTGTTGGAAAGAAATGCTTTTTCCGCTAAGCATGAGGAATATGCATCTAAAAAATTAACTATTCAACGTCAAAGTGAGGAGAGCAAAATCATGCTTATTAGGTTGGATTCAATTACAGATCCAAAAGGACGTGAGTACATACGAATGAAAAAAACTAAAATAATGGAGAGAAGAGCTCGTGAGTTCCAATTACAACAATCACCTGCAACATTTGGCTATGGTAATTTTGGATATGGACAACACTATGGAGGAGGAAGTGGTGGATATGGACAACACTATGGAGGAACAGCTCGATATGGTGAAATTCCTTATTATGGAGGAAGTGGTGGATCTGGAACAAGTGGTGCACATGCAGGAGTGCAGCAATTTGGTGGTAGCAATGGATCCAATACAAATGGTGGATATAGAGGAATGCCAAAACATGGAGGAACTAATGATGGTCTGCCGGAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

338

Amino Acids

37.9

Weight (kDa)

7.7

Isoelectric Point (pI)

45.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 88 - 240 2.9e-10 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 769
Acc36I ACCTGC 1 cut(s) 769
AccB7I CCANNNNNTGG 1 cut(s) 980
AccI GTMKAC 1 cut(s) 64
AciI CCGC 2 cut(s) 86, 582
AclWI GGATC 4 cut(s) 671, 895, 936, 949
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 1 cut(s) 861
AfaI GTAC 2 cut(s) 364, 695
AfiI CCNNNNNNNGG 4 cut(s) 85, 123, 872, 980
AgsI TTSAA 6 cut(s) 291, 388, 487, 551, 623, 669
AjiI CACGTC 1 cut(s) 689
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 5 cut(s) 179, 412, 469, 734, 848
AluI AGCT 5 cut(s) 179, 412, 469, 734, 848
Alw21I GWGCWC 2 cut(s) 736, 907
Alw44I GTGCAC 1 cut(s) 903
AlwI GGATC 4 cut(s) 671, 895, 936, 949
AlwNI CAGNNNCTG 1 cut(s) 143
AoxI GGCC 3 cut(s) 114, 145, 443
ApaLI GTGCAC 1 cut(s) 903
ApeKI GCWGC 1 cut(s) 919
ApoI RAATTY 1 cut(s) 861
AseI ATTAAT 1 cut(s) 159
AsuHPI GGTGA 4 cut(s) 68, 426, 750, 869
BaeGI GKGCMC 1 cut(s) 907
BalI TGGCCA 1 cut(s) 147
BamHI GGATCC 1 cut(s) 941
BanII GRGCYC 1 cut(s) 736
BauI CACGAG 1 cut(s) 735
BbsI GAAGAC 2 cut(s) 405, 500
Bbv12I GWGCWC 2 cut(s) 736, 907
BbvCI CCTCAGC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 931
BccI CCATC 1 cut(s) 989
BcgI CGANNNNNNTGC 2 cut(s) 371, 405
BciT130I CCWGG 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 769
BisI GCNGC 1 cut(s) 920
BlpI GCTNAGC 1 cut(s) 585
BlsI GCNGC 1 cut(s) 921
Bme1390I CCNGG 1 cut(s) 144
BmgBI CACGTC 1 cut(s) 689
BmiI GGNNCC 1 cut(s) 943
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 2 cut(s) 226, 611
BpiI GAAGAC 2 cut(s) 405, 500
BplI GAGNNNNNCTC 2 cut(s) 718, 750
Bpu10I CCTNAGC 1 cut(s) 210
Bpu1102I GCTNAGC 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 301
BsaBI GATNNNNATC 1 cut(s) 331
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 123, 872, 980
Bse3DI GCAATG 1 cut(s) 943
Bse8I GATNNNNATC 1 cut(s) 331
BseBI CCWGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 100
BseJI GATNNNNATC 1 cut(s) 331
BseLI CCNNNNNNNGG 4 cut(s) 85, 123, 872, 980
BseMI GCAATG 1 cut(s) 943
BseMII CTCAG 1 cut(s) 201
BseRI GAGGAG 3 cut(s) 52, 650, 822
BseSI GKGCMC 1 cut(s) 907
BseXI GCAGC 1 cut(s) 931
BsgI GTGCAG 1 cut(s) 938
BshFI GGCC 3 cut(s) 116, 147, 445
BsiHKAI GWGCWC 2 cut(s) 736, 907
BsiSI CCGG 1 cut(s) 1004
BslI CCNNNNNNNGG 4 cut(s) 85, 123, 872, 980
BsmI GAATGC 2 cut(s) 394, 975
BsnI GGCC 3 cut(s) 116, 147, 445
Bsp1286I GDGCHC 2 cut(s) 736, 907
Bsp1407I TGTACA 1 cut(s) 362
Bsp143I GATC 3 cut(s) 676, 887, 941
Bsp1720I GCTNAGC 1 cut(s) 585
BspACI CCGC 2 cut(s) 86, 582
BspANI GGCC 3 cut(s) 116, 147, 445
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 943
BspMI ACCTGC 1 cut(s) 769
BspPI GGATC 4 cut(s) 671, 895, 936, 949
BspQI GCTCTTC 1 cut(s) 724
BsrDI GCAATG 1 cut(s) 943
BsrGI TGTACA 1 cut(s) 362
BssMI GATC 3 cut(s) 676, 887, 941
BssNAI GTATAC 1 cut(s) 65
BssSI CACGAG 1 cut(s) 735
Bst1107I GTATAC 1 cut(s) 65
Bst2BI CACGAG 1 cut(s) 735
Bst2UI CCWGG 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 724
BstAUI TGTACA 1 cut(s) 362
BstDEI CTNAG 2 cut(s) 210, 585
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 3 cut(s) 679, 890, 944
BstMBI GATC 3 cut(s) 676, 887, 941
BstMWI GCNNNNNNNGC 1 cut(s) 581
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 2 cut(s) 63, 911
BstSCI CCNGG 1 cut(s) 142
BstSLI GKGCMC 1 cut(s) 907
BstV1I GCAGC 1 cut(s) 931
BstV2I GAAGAC 2 cut(s) 405, 500
BstX2I RGATCY 3 cut(s) 676, 887, 941
BstYI RGATCY 3 cut(s) 676, 887, 941
BstZ17I GTATAC 1 cut(s) 65
BsuRI GGCC 3 cut(s) 116, 147, 445
BtrI CACGTC 1 cut(s) 689
BtsCI GGATG 1 cut(s) 100
BveI ACCTGC 1 cut(s) 769
CaiI CAGNNNCTG 1 cut(s) 143
Csp6I GTAC 2 cut(s) 363, 694
CviAII CATG 8 cut(s) 21, 60, 196, 360, 590, 649, 908, 980
CviQI GTAC 2 cut(s) 363, 694
DdeI CTNAG 2 cut(s) 210, 585
DpnI GATC 3 cut(s) 678, 889, 943
DpnII GATC 3 cut(s) 676, 887, 941
EaeI YGGCCR 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 724
EarI CTCTTC 1 cut(s) 724
EciI GGCGGA 1 cut(s) 101
Ecl136II GAGCTC 1 cut(s) 734
Eco24I GRGCYC 1 cut(s) 736
Eco53kI GAGCTC 1 cut(s) 734
EcoICRI GAGCTC 1 cut(s) 734
EcoRII CCWGG 1 cut(s) 142
EcoT22I ATGCAT 2 cut(s) 394, 604
EcoT38I GRGCYC 1 cut(s) 736
FaeI CATG 8 cut(s) 24, 63, 199, 363, 593, 652, 911, 983
FalI AAGNNNNNCTT 4 cut(s) 223, 255, 559, 591
FatI CATG 8 cut(s) 20, 59, 195, 359, 589, 648, 907, 979
FauNDI CATATG 1 cut(s) 394
FblI GTMKAC 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 920
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 1 cut(s) 736
Fsp4HI GCNGC 1 cut(s) 920
GluI GCNGC 1 cut(s) 920
HaeIII GGCC 3 cut(s) 116, 147, 445
HapII CCGG 1 cut(s) 1004
Hin1II CATG 8 cut(s) 24, 63, 199, 363, 593, 652, 911, 983
HinfI GANTC 5 cut(s) 119, 226, 332, 521, 665
HpaII CCGG 1 cut(s) 1004
HphI GGTGA 4 cut(s) 68, 426, 750, 869
Hpy166II GTNNAC 2 cut(s) 65, 905
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 2 cut(s) 737, 891
Hpy8I GTNNAC 2 cut(s) 65, 905
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 317
HpyCH4IV ACGT 2 cut(s) 625, 688
HpyCH4V TGCA 6 cut(s) 392, 602, 764, 905, 911, 919
HpyF10VI GCNNNNNNNGC 1 cut(s) 581
HpyF3I CTNAG 2 cut(s) 210, 585
HpySE526I ACGT 2 cut(s) 625, 688
Hsp92II CATG 8 cut(s) 24, 63, 199, 363, 593, 652, 911, 983
Kzo9I GATC 3 cut(s) 676, 887, 941
LguI GCTCTTC 1 cut(s) 724
LmnI GCTCC 2 cut(s) 39, 134
LpnPI CCDG 7 cut(s) 129, 156, 165, 455, 774, 876, 897
Lsp1109I GCAGC 1 cut(s) 931
LweI GCATC 2 cut(s) 226, 611
MaeII ACGT 2 cut(s) 625, 688
MaeIII GTNAC 1 cut(s) 543
MalI GATC 3 cut(s) 678, 889, 943
MboI GATC 3 cut(s) 676, 887, 941
MboII GAAGA 3 cut(s) 410, 505, 741
MflI RGATCY 3 cut(s) 676, 887, 941
MhlI GDGCHC 2 cut(s) 736, 907
MlsI TGGCCA 1 cut(s) 147
MluCI AATT 7 cut(s) 310, 611, 669, 746, 781, 861, 923
MluNI TGGCCA 1 cut(s) 147
MmeI TCCRAC 4 cut(s) 72, 543, 549, 642
Mox20I TGGCCA 1 cut(s) 147
Mph1103I ATGCAT 2 cut(s) 394, 604
MscI TGGCCA 1 cut(s) 147
MseI TTAA 3 cut(s) 159, 261, 614
MslI CAYNNNNRTG 1 cut(s) 701
Msp20I TGGCCA 1 cut(s) 147
MspI CCGG 1 cut(s) 1004
MspR9I CCNGG 1 cut(s) 144
Mva1269I GAATGC 2 cut(s) 394, 975
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 581
NdeI CATATG 1 cut(s) 394
NdeII GATC 3 cut(s) 676, 887, 941
NlaIII CATG 8 cut(s) 24, 63, 199, 363, 593, 652, 911, 983
NlaIV GGNNCC 1 cut(s) 943
NsiI ATGCAT 2 cut(s) 394, 604
NspI RCATGY 2 cut(s) 63, 911
PaqCI CACCTGC 1 cut(s) 769
PciSI GCTCTTC 1 cut(s) 724
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PctI GAATGC 2 cut(s) 394, 975
PfeI GAWTC 5 cut(s) 119, 226, 332, 521, 665
PflMI CCANNNNNTGG 1 cut(s) 980
PkrI GCNGC 1 cut(s) 921
PshBI ATTAAT 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 736
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 943
PstNI CAGNNNCTG 1 cut(s) 143
PsuI RGATCY 3 cut(s) 676, 887, 941
RsaI GTAC 2 cut(s) 364, 695
RsaNI GTAC 2 cut(s) 363, 694
RseI CAYNNNNRTG 1 cut(s) 701
SacI GAGCTC 1 cut(s) 736
SapI GCTCTTC 1 cut(s) 724
SaqAI TTAA 3 cut(s) 159, 261, 614
SatI GCNGC 1 cut(s) 920
Sau3AI GATC 3 cut(s) 676, 887, 941
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 2 cut(s) 736, 907
SfaNI GCATC 2 cut(s) 226, 611
SmiMI CAYNNNNRTG 1 cut(s) 701
SmlI CTYRAG 1 cut(s) 316
SmoI CTYRAG 1 cut(s) 316
Sse9I AATT 7 cut(s) 310, 611, 669, 746, 781, 861, 923
SsiI CCGC 2 cut(s) 86, 582
SstI GAGCTC 1 cut(s) 736
StyD4I CCNGG 1 cut(s) 142
TaiI ACGT 2 cut(s) 628, 691
TaqI TCGA 4 cut(s) 122, 169, 381, 850
TasI AATT 7 cut(s) 310, 611, 669, 746, 781, 861, 923
TatI WGTACW 2 cut(s) 362, 693
TfiI GAWTC 5 cut(s) 119, 226, 332, 521, 665
Tru1I TTAA 3 cut(s) 159, 261, 614
Tru9I TTAA 3 cut(s) 159, 261, 614
TseI GCWGC 1 cut(s) 919
TspDTI ATGAA 5 cut(s) 17, 345, 411, 438, 719
Van91I CCANNNNNTGG 1 cut(s) 980
VneI GTGCAC 1 cut(s) 903
VspI ATTAAT 1 cut(s) 159
XapI RAATTY 1 cut(s) 861
XceI RCATGY 2 cut(s) 63, 911
XmiI GTMKAC 1 cut(s) 64
Zsp2I ATGCAT 2 cut(s) 394, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.