RchiOBHm_Chr6g0296991

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003288
Physical Location & Seq
Forward (+)
58638887 .. 58640431
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26658

Sequence Viewer

Length: 855 bp
ATGGTATTGTATGCCCAGGCAAAACAACATCTACTAGATGATCCTAACTATACAAAGAAGAAGCTTCAATTTGATCATGTGTGGCCTATTCTCAAGGATGCTGAAAAATGGACCGATAATGGAAGAAGTTCAACTAAACCACGACAAAAAAATTATTCAAGTGAAGGATATGAATCAACGTCTCGCACATCACAATCGTCAGGTACATTACCATTTGATATCGATTTGAATGCAGATGAAGACGAACAAGAGCTGTTTAGTGATGAACTTGCCTCACCTCATCGGCCTATTGGTGTAAAGAAAGCAAATCTGAAAAGGAAAGAGTTGAATGAGAAGAGTAAGATTGCTCAACAAGTGAAAGAATCCAACCAAGAACTGAAGGAGTTACTTGAAAAAAGCTTGTTGGAGAGAAATGTTTTTTCCTCTAAGCATGAGGAATATGCATCTCAAACATTTGCTATTCAACGTCAACGTGAGGAGAGCAAGATCATGCTTACTAGTTTGGATTCAATTACAGATCCAGAAGGACGTGAGTACTTACGAATGAAAAAAAATGAAATAATGGAGAGAAGAGCTCGTGAATCCCAACTACAACAATCACCTGCAACATTTGGCTATGGTAATTTTGGATATGGACAACACTATGGAGGAGGAAGTGGTGGATATGGACAACATTATGGAGGAACAGCTGGATATGGTGAAATTCCTCATTATGGAGGAAGTGGTGGATCTGGAACAAGTGGTGCACATGCAGGAGTGCAGCAATTCGGTGGTAGCAGTGGATCCAATACACATGGTGGATATGGAGGAATGCCAGAACATGGAGGAAGTAATGATAGTCTACCGGAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

284

Amino Acids

31.49

Weight (kDa)

6.08

Isoelectric Point (pI)

51.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 20 - 187 1e-16 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 610
Acc36I ACCTGC 1 cut(s) 610
AccB7I CCANNNNNTGG 1 cut(s) 821
AccI GTMKAC 1 cut(s) 841
AclWI GGATC 5 cut(s) 35, 512, 736, 777, 790
AcsI RAATTY 1 cut(s) 702
AcuI CTGAAG 1 cut(s) 398
AdeI CACNNNGTG 1 cut(s) 797
AfaI GTAC 2 cut(s) 205, 536
AfiI CCNNNNNNNGG 2 cut(s) 713, 821
AgsI TTSAA 8 cut(s) 68, 132, 159, 229, 328, 392, 464, 510
AhlI ACTAGT 1 cut(s) 497
AjiI CACGTC 1 cut(s) 530
AjnI CCWGG 1 cut(s) 15
AluBI AGCT 5 cut(s) 64, 253, 399, 575, 689
AluI AGCT 5 cut(s) 64, 253, 399, 575, 689
Alw21I GWGCWC 2 cut(s) 577, 748
Alw26I GTCTC 1 cut(s) 186
Alw44I GTGCAC 1 cut(s) 744
AlwI GGATC 5 cut(s) 35, 512, 736, 777, 790
AoxI GGCC 2 cut(s) 83, 284
ApaLI GTGCAC 1 cut(s) 744
ApeKI GCWGC 1 cut(s) 760
ApoI RAATTY 1 cut(s) 702
Asp700I GAANNNNTTC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 111
AsuHPI GGTGA 3 cut(s) 267, 591, 710
AvaII GGWCC 1 cut(s) 111
BaeGI GKGCMC 1 cut(s) 748
BamHI GGATCC 1 cut(s) 782
BanII GRGCYC 1 cut(s) 577
BauI CACGAG 1 cut(s) 576
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 2 cut(s) 577, 748
BbvI GCAGC 1 cut(s) 772
BcgI CGANNNNNNTGC 2 cut(s) 212, 246
BciT130I CCWGG 1 cut(s) 17
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 186
BcuI ACTAGT 1 cut(s) 497
BfaI CTAG 2 cut(s) 35, 498
BfuAI ACCTGC 1 cut(s) 610
BisI GCNGC 1 cut(s) 761
BlsI GCNGC 1 cut(s) 762
BmcAI AGTACT 1 cut(s) 536
Bme1390I CCNGG 1 cut(s) 17
Bme18I GGWCC 1 cut(s) 111
BmgBI CACGTC 1 cut(s) 530
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 784
BmrFI CCNGG 1 cut(s) 17
BmsI GCATC 2 cut(s) 88, 452
BpiI GAAGAC 1 cut(s) 246
BplI GAGNNNNNCTC 2 cut(s) 559, 591
BpuEI CTTGAG 1 cut(s) 77
Bsa29I ATCGAT 1 cut(s) 222
BsaBI GATNNNNATC 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 15
BsaWI WCCGGW 1 cut(s) 844
Bsc4I CCNNNNNNNGG 2 cut(s) 713, 821
Bse8I GATNNNNATC 1 cut(s) 172
BseBI CCWGG 1 cut(s) 17
BseCI ATCGAT 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 103
BseJI GATNNNNATC 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 713, 821
BseRI GAGGAG 2 cut(s) 491, 663
BseSI GKGCMC 1 cut(s) 748
BseXI GCAGC 1 cut(s) 772
BsgI GTGCAG 1 cut(s) 779
BshFI GGCC 2 cut(s) 85, 286
BshVI ATCGAT 1 cut(s) 222
BsiHKAI GWGCWC 2 cut(s) 577, 748
BsiSI CCGG 1 cut(s) 845
BslI CCNNNNNNNGG 2 cut(s) 713, 821
BsmAI GTCTC 1 cut(s) 186
BsmBI CGTCTC 1 cut(s) 186
BsmI GAATGC 2 cut(s) 235, 816
BsnI GGCC 2 cut(s) 85, 286
Bsp1286I GDGCHC 2 cut(s) 577, 748
Bsp143I GATC 6 cut(s) 40, 73, 486, 517, 728, 782
BspANI GGCC 2 cut(s) 85, 286
BspDI ATCGAT 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 784
BspMI ACCTGC 1 cut(s) 610
BspPI GGATC 5 cut(s) 35, 512, 736, 777, 790
BspQI GCTCTTC 1 cut(s) 565
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 6 cut(s) 40, 73, 486, 517, 728, 782
BssSI CACGAG 1 cut(s) 576
Bst2BI CACGAG 1 cut(s) 576
Bst2UI CCWGG 1 cut(s) 17
Bst6I CTCTTC 2 cut(s) 329, 565
BstDEI CTNAG 1 cut(s) 426
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 6 cut(s) 43, 76, 489, 520, 731, 785
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 6 cut(s) 40, 73, 486, 517, 728, 782
BstNI CCWGG 1 cut(s) 17
BstNSI RCATGY 1 cut(s) 752
BstSCI CCNGG 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 748
BstV1I GCAGC 1 cut(s) 772
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 3 cut(s) 517, 728, 782
BstYI RGATCY 3 cut(s) 517, 728, 782
Bsu15I ATCGAT 1 cut(s) 222
BsuRI GGCC 2 cut(s) 85, 286
BsuTUI ATCGAT 1 cut(s) 222
BtrI CACGTC 1 cut(s) 530
BtsCI GGATG 1 cut(s) 103
BtsI GCAGTG 1 cut(s) 784
BtsIMutI CAGTG 1 cut(s) 784
BveI ACCTGC 1 cut(s) 610
Cfr13I GGNCC 1 cut(s) 111
ClaI ATCGAT 1 cut(s) 222
Csp6I GTAC 2 cut(s) 204, 535
CviAII CATG 6 cut(s) 77, 431, 490, 749, 794, 821
CviJI RGCY 8 cut(s) 64, 85, 253, 286, 399, 575, 615, 689
CviKI_1 RGCY 8 cut(s) 64, 85, 253, 286, 399, 575, 615, 689
CviQI GTAC 2 cut(s) 204, 535
DdeI CTNAG 1 cut(s) 426
DpnI GATC 6 cut(s) 42, 75, 488, 519, 730, 784
DpnII GATC 6 cut(s) 40, 73, 486, 517, 728, 782
DraIII CACNNNGTG 1 cut(s) 797
Eam1104I CTCTTC 2 cut(s) 329, 565
EarI CTCTTC 2 cut(s) 329, 565
Ecl136II GAGCTC 1 cut(s) 575
Eco24I GRGCYC 1 cut(s) 577
Eco32I GATATC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 575
Eco57I CTGAAG 1 cut(s) 398
EcoICRI GAGCTC 1 cut(s) 575
EcoRII CCWGG 1 cut(s) 15
EcoRV GATATC 1 cut(s) 220
EcoT22I ATGCAT 1 cut(s) 445
EcoT38I GRGCYC 1 cut(s) 577
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 6 cut(s) 80, 434, 493, 752, 797, 824
FatI CATG 6 cut(s) 76, 430, 489, 748, 793, 820
FbaI TGATCA 1 cut(s) 73
FblI GTMKAC 1 cut(s) 841
Fnu4HI GCNGC 1 cut(s) 761
FokI GGATG 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 1 cut(s) 761
FspBI CTAG 2 cut(s) 35, 498
GluI GCNGC 1 cut(s) 761
HaeIII GGCC 2 cut(s) 85, 286
HapII CCGG 1 cut(s) 845
Hin1II CATG 6 cut(s) 80, 434, 493, 752, 797, 824
HincII GTYRAC 1 cut(s) 470
HindII GTYRAC 1 cut(s) 470
HindIII AAGCTT 2 cut(s) 62, 397
HinfI GANTC 4 cut(s) 173, 362, 506, 581
HpaII CCGG 1 cut(s) 845
HphI GGTGA 3 cut(s) 267, 591, 710
Hpy166II GTNNAC 3 cut(s) 470, 746, 842
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 3 cut(s) 521, 578, 732
Hpy8I GTNNAC 3 cut(s) 470, 746, 842
HpyAV CCTTC 3 cut(s) 158, 373, 518
HpyCH4IV ACGT 4 cut(s) 179, 466, 472, 529
HpyCH4V TGCA 6 cut(s) 233, 443, 605, 746, 752, 760
HpyF3I CTNAG 1 cut(s) 426
HpySE526I ACGT 4 cut(s) 179, 466, 472, 529
Hsp92II CATG 6 cut(s) 80, 434, 493, 752, 797, 824
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 6 cut(s) 40, 73, 486, 517, 728, 782
LguI GCTCTTC 1 cut(s) 565
LpnPI CCDG 9 cut(s) 2, 29, 186, 534, 615, 675, 717, 738, 828
Lsp1109I GCAGC 1 cut(s) 772
LweI GCATC 2 cut(s) 88, 452
MaeI CTAG 2 cut(s) 35, 498
MaeII ACGT 4 cut(s) 179, 466, 472, 529
MaeIII GTNAC 1 cut(s) 384
MalI GATC 6 cut(s) 42, 75, 488, 519, 730, 784
MboI GATC 6 cut(s) 40, 73, 486, 517, 728, 782
MboII GAAGA 5 cut(s) 70, 135, 251, 346, 582
MflI RGATCY 3 cut(s) 517, 728, 782
MhlI GDGCHC 2 cut(s) 577, 748
MluCI AATT 6 cut(s) 68, 151, 510, 622, 702, 764
MmeI TCCRAC 2 cut(s) 384, 390
Mph1103I ATGCAT 1 cut(s) 445
MroXI GAANNNNTTC 1 cut(s) 127
MspA1I CMGCKG 1 cut(s) 689
MspI CCGG 1 cut(s) 845
MspR9I CCNGG 1 cut(s) 17
Mva1269I GAATGC 2 cut(s) 235, 816
MvaI CCWGG 1 cut(s) 17
NdeII GATC 6 cut(s) 40, 73, 486, 517, 728, 782
NlaIII CATG 6 cut(s) 80, 434, 493, 752, 797, 824
NlaIV GGNNCC 1 cut(s) 784
NsiI ATGCAT 1 cut(s) 445
NspI RCATGY 1 cut(s) 752
PaqCI CACCTGC 1 cut(s) 610
PciSI GCTCTTC 1 cut(s) 565
PctI GAATGC 2 cut(s) 235, 816
PdmI GAANNNNTTC 1 cut(s) 127
PfeI GAWTC 4 cut(s) 173, 362, 506, 581
PflMI CCANNNNNTGG 1 cut(s) 821
PkrI GCNGC 1 cut(s) 762
Psp124BI GAGCTC 1 cut(s) 577
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 784
PspPI GGNCC 1 cut(s) 111
PsuI RGATCY 3 cut(s) 517, 728, 782
PvuII CAGCTG 1 cut(s) 689
RsaI GTAC 2 cut(s) 205, 536
RsaNI GTAC 2 cut(s) 204, 535
SacI GAGCTC 1 cut(s) 577
SapI GCTCTTC 1 cut(s) 565
SatI GCNGC 1 cut(s) 761
Sau3AI GATC 6 cut(s) 40, 73, 486, 517, 728, 782
Sau96I GGNCC 1 cut(s) 111
ScaI AGTACT 1 cut(s) 536
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 2 cut(s) 577, 748
SfaNI GCATC 2 cut(s) 88, 452
SinI GGWCC 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SpeI ACTAGT 1 cut(s) 497
Sse9I AATT 6 cut(s) 68, 151, 510, 622, 702, 764
SspMI CTAG 2 cut(s) 35, 498
SstI GAGCTC 1 cut(s) 577
StyD4I CCNGG 1 cut(s) 15
TaiI ACGT 4 cut(s) 182, 469, 475, 532
TaqI TCGA 1 cut(s) 222
TaqII GACCGA 1 cut(s) 128
TasI AATT 6 cut(s) 68, 151, 510, 622, 702, 764
TatI WGTACW 1 cut(s) 534
TfiI GAWTC 4 cut(s) 173, 362, 506, 581
TscAI CASTG 1 cut(s) 784
TseI GCWGC 1 cut(s) 760
TspDTI ATGAA 5 cut(s) 186, 252, 279, 560, 570
TspRI CASTG 1 cut(s) 784
Van91I CCANNNNNTGG 1 cut(s) 821
VneI GTGCAC 1 cut(s) 744
VpaK11BI GGWCC 1 cut(s) 111
XapI RAATTY 1 cut(s) 702
XceI RCATGY 1 cut(s) 752
XmiI GTMKAC 1 cut(s) 841
XmnI GAANNNNTTC 1 cut(s) 127
XspI CTAG 2 cut(s) 35, 498
ZrmI AGTACT 1 cut(s) 536
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.