RLG00000018311

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003288
Physical Location & Seq
Reverse (-)
28201028 .. 28204752
3725 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018311

Sequence Viewer

Length: 1476 bp
ATGTTAGGTTTTCTTGGCAATGGCTTGGCAAACGGGGCATGTGGCGGTGCTTTGTTCACTGTCTCTGGCTGCTTGAGGGGAGATGACACGGACTGCTTGATCCGTTGGCGTGGACTTCAATCGATGTTAGTAGTGCTATGTGGTGGTGTTGAAGGTAATCTCTTGCTGTCTGGTAGGGGGATAGTGGAGGCAGTGGTTTTTGTGCCCAATCTAGGGACGGTGATGACAAAAGCTTTGGGGCCGATGCTTATAGGTCTTGGTCGCTGTAGTTGTGAGCGTTTTGTTGGAACTGATGGTGTGAGCGTAGTCTTCTATCCATTTTCGACTATGAATAATTCTCAAATATCATCATCATCTTTGTTTTCAAACGAAACCGATGATTATTATTATCGGATCATGGCTTCATTTGATGAGGAGCAAGATTTATTGCTTCGCATGTATACGAATAATAATCACCTCTTGGCGGAGTTGGATGATAATGAGGACGACGAGACCGAATCAAGGCGTAGAGGAGTAGTTCCTGGCCATATAGTTATTAATCGTCCTCGACAAGAGGCTGGATATAATCTATACATGGAATACTTTGCTGAGGTGGAAAATCGGAATCAAAGTGGTGCTTCAGAGAAAGATATTTATGCCCAGGCAAAACAACATCTACTAGATGATCCTAACTATACAAAGAAGAAGTTTCAATTTGATCATGTGTGGCATATTCTCAAGGATGCTGAAAAATGGATCGATAATGGTAGAAGTTCAACTAAACCACGACAAAAAAATTACTCAAGTGAAGGATATGAATCAACCTCTCACATATCACAATCGTCAGGTAAATTACCATTTGACGTCGATTTGAATGCAGATGAAGACGAACAAGAGCTGTTTAGTGATGAACTTGCCTCAACTTATCGGCCTATTGGTGTAAAGAAAGCAAAGCTGAAAAGGAAAGAGTTGAATGAGAAGACGAAGATTGCTCAACAAGTGAAAGAATCCAACCAAGAACTGAAGGAGTTACTTGAAAAAATCTTGTTGGAGAGAAATGCTTTTTCCGCTAAGCATGAGGAATATGCATCTAAAAAATTAGCTATTCAACGTCAACATGAGGAGAGCAAAATGATGCTTACTAGTTTGGATTCAATTATAGATCCAGAAGGACGTGAGTACCTACGAATGAAAAAAGTTGAAATAATAGAGAGAAGAGCTCGTGAGTCCCAATTGCAACTATCACTTGCAACATTTGGATATACTAATTTTGGATATGGACAACACTATGGAGGAGGAAGTGGTGGATATGGACAACACTATGGAGGAACACCTGGATATAGTGAAATTCTTCATTATGGAGAAAGTGGTGGATCTGGAACAAGTGGTGCACATGCAGGAGTGCAACAATTCGGTGGTAGCAGTGAATCCAATACAGGTGGATATGGAGGAATGCCAGAACATGGAGGAAGTAATGATAGTCTGCTGGAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

492

Amino Acids

54.55

Weight (kDa)

5.33

Isoelectric Point (pI)

49.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 228 - 395 1.2e-16 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 846
AccB7I CCANNNNNTGG 1 cut(s) 1442
AccI GTMKAC 1 cut(s) 440
AciI CCGC 3 cut(s) 45, 464, 1047
AclWI GGATC 6 cut(s) 94, 401, 659, 743, 1136, 1360
AcoI YGGCCR 1 cut(s) 523
AcsI RAATTY 1 cut(s) 1326
AcuI CTGAAG 2 cut(s) 603, 1022
AcyI GRCGYC 1 cut(s) 843
AfaI GTAC 1 cut(s) 1160
AfiI CCNNNNNNNGG 5 cut(s) 212, 213, 463, 501, 1442
AhlI ACTAGT 1 cut(s) 1121
AjiI CACGTC 1 cut(s) 1154
AjnI CCWGG 3 cut(s) 520, 639, 1312
AluBI AGCT 5 cut(s) 233, 877, 934, 1082, 1199
AluI AGCT 5 cut(s) 233, 877, 934, 1082, 1199
Alw21I GWGCWC 2 cut(s) 1201, 1372
Alw26I GTCTC 2 cut(s) 67, 485
Alw44I GTGCAC 1 cut(s) 1368
AlwI GGATC 6 cut(s) 94, 401, 659, 743, 1136, 1360
AoxI GGCC 3 cut(s) 239, 523, 908
ApaLI GTGCAC 1 cut(s) 1368
ApeKI GCWGC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 1326
ArsI GACNNNNNNTTYG 2 cut(s) 217, 249
AseI ATTAAT 1 cut(s) 537
Asp700I GAANNNNTTC 1 cut(s) 1329
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 2 cut(s) 232, 446
BaeGI GKGCMC 2 cut(s) 207, 1372
BaeI ACNNNNGTAYC 2 cut(s) 1142, 1175
BalI TGGCCA 1 cut(s) 525
BanII GRGCYC 1 cut(s) 1201
BauI CACGAG 1 cut(s) 1200
BbsI GAAGAC 3 cut(s) 301, 870, 965
Bbv12I GWGCWC 2 cut(s) 1201, 1372
BbvCI CCTCAGC 1 cut(s) 588
BbvI GCAGC 1 cut(s) 56
BccI CCATC 1 cut(s) 287
BcgI CGANNNNNNTGC 2 cut(s) 836, 870
BciT130I CCWGG 3 cut(s) 522, 641, 1314
BclI TGATCA 1 cut(s) 697
BcoDI GTCTC 2 cut(s) 67, 485
BcuI ACTAGT 1 cut(s) 1121
BfaI CTAG 3 cut(s) 212, 659, 1122
BfmI CTRYAG 1 cut(s) 265
BisI GCNGC 1 cut(s) 70
BlpI GCTNAGC 1 cut(s) 1050
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 3 cut(s) 522, 641, 1314
BmgBI CACGTC 1 cut(s) 1154
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 3 cut(s) 522, 641, 1314
BmsI GCATC 4 cut(s) 234, 712, 1076, 1104
BpiI GAAGAC 3 cut(s) 301, 870, 965
BplI GAGNNNNNCTC 2 cut(s) 1183, 1215
Bpu10I CCTNAGC 1 cut(s) 588
Bpu1102I GCTNAGC 1 cut(s) 1050
BpuEI CTTGAG 3 cut(s) 94, 701, 766
Bsa29I ATCGAT 2 cut(s) 122, 738
BsaBI GATNNNNATC 1 cut(s) 796
BsaHI GRCGYC 1 cut(s) 843
BsaI GGTCTC 1 cut(s) 485
BsaJI CCNNGG 1 cut(s) 639
Bsc4I CCNNNNNNNGG 5 cut(s) 212, 213, 463, 501, 1442
Bse3DI GCAATG 1 cut(s) 25
Bse8I GATNNNNATC 1 cut(s) 796
BseBI CCWGG 3 cut(s) 522, 641, 1314
BseCI ATCGAT 2 cut(s) 122, 738
BseDI CCNNGG 1 cut(s) 639
BseGI GGATG 2 cut(s) 478, 727
BseJI GATNNNNATC 1 cut(s) 796
BseLI CCNNNNNNNGG 5 cut(s) 212, 213, 463, 501, 1442
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 579
BseRI GAGGAG 4 cut(s) 428, 525, 1115, 1287
BseSI GKGCMC 2 cut(s) 207, 1372
BseXI GCAGC 1 cut(s) 56
BshFI GGCC 3 cut(s) 241, 525, 910
BshVI ATCGAT 2 cut(s) 122, 738
BsiHKAI GWGCWC 2 cut(s) 1201, 1372
BslFI GGGAC 2 cut(s) 229, 1192
BslI CCNNNNNNNGG 5 cut(s) 212, 213, 463, 501, 1442
BsmAI GTCTC 2 cut(s) 67, 485
BsmFI GGGAC 2 cut(s) 229, 1192
BsmI GAATGC 2 cut(s) 859, 1437
BsnI GGCC 3 cut(s) 241, 525, 910
Bso31I GGTCTC 1 cut(s) 485
Bsp1286I GDGCHC 3 cut(s) 207, 1201, 1372
Bsp143I GATC 7 cut(s) 99, 393, 664, 697, 735, 1141, 1352
Bsp1720I GCTNAGC 1 cut(s) 1050
BspACI CCGC 3 cut(s) 45, 464, 1047
BspANI GGCC 3 cut(s) 241, 525, 910
BspCNI CTCAG 1 cut(s) 580
BspDI ATCGAT 2 cut(s) 122, 738
BspLI GGNNCC 1 cut(s) 240
BspPI GGATC 6 cut(s) 94, 401, 659, 743, 1136, 1360
BspQI GCTCTTC 1 cut(s) 1189
BspTNI GGTCTC 1 cut(s) 485
BsrDI GCAATG 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 639
BssMI GATC 7 cut(s) 99, 393, 664, 697, 735, 1141, 1352
BssNAI GTATAC 1 cut(s) 441
BssNI GRCGYC 1 cut(s) 843
BssSI CACGAG 1 cut(s) 1200
Bst1107I GTATAC 1 cut(s) 441
Bst2BI CACGAG 1 cut(s) 1200
Bst2UI CCWGG 3 cut(s) 522, 641, 1314
Bst4CI ACNGT 2 cut(s) 61, 220
Bst6I CTCTTC 1 cut(s) 1189
BstACI GRCGYC 1 cut(s) 843
BstDEI CTNAG 2 cut(s) 588, 1050
BstF5I GGATG 2 cut(s) 478, 727
BstKTI GATC 7 cut(s) 102, 396, 667, 700, 738, 1144, 1355
BstMAI GTCTC 2 cut(s) 67, 485
BstMBI GATC 7 cut(s) 99, 393, 664, 697, 735, 1141, 1352
BstMWI GCNNNNNNNGC 2 cut(s) 35, 1046
BstNI CCWGG 3 cut(s) 522, 641, 1314
BstNSI RCATGY 3 cut(s) 42, 439, 1376
BstSCI CCNGG 3 cut(s) 520, 639, 1312
BstSFI CTRYAG 1 cut(s) 265
BstSLI GKGCMC 2 cut(s) 207, 1372
BstV1I GCAGC 1 cut(s) 56
BstV2I GAAGAC 3 cut(s) 301, 870, 965
BstX2I RGATCY 2 cut(s) 1141, 1352
BstYI RGATCY 2 cut(s) 1141, 1352
BstZ17I GTATAC 1 cut(s) 441
Bsu15I ATCGAT 2 cut(s) 122, 738
BsuRI GGCC 3 cut(s) 241, 525, 910
BsuTUI ATCGAT 2 cut(s) 122, 738
BtrI CACGTC 1 cut(s) 1154
BtsCI GGATG 2 cut(s) 478, 727
BtsI GCAGTG 2 cut(s) 198, 1408
BtsIMutI CAGTG 3 cut(s) 57, 198, 1408
Cfr13I GGNCC 1 cut(s) 239
ClaI ATCGAT 2 cut(s) 122, 738
Csp6I GTAC 1 cut(s) 1159
CspCI CAANNNNNGTGG 2 cut(s) 1399, 1434
CviAII CATG 9 cut(s) 39, 397, 436, 574, 701, 1055, 1097, 1373, 1442
CviQI GTAC 1 cut(s) 1159
DdeI CTNAG 2 cut(s) 588, 1050
DpnI GATC 7 cut(s) 101, 395, 666, 699, 737, 1143, 1354
DpnII GATC 7 cut(s) 99, 393, 664, 697, 735, 1141, 1352
EaeI YGGCCR 1 cut(s) 523
Eam1104I CTCTTC 1 cut(s) 1189
EarI CTCTTC 1 cut(s) 1189
EciI GGCGGA 1 cut(s) 479
Ecl136II GAGCTC 1 cut(s) 1199
Eco24I GRGCYC 1 cut(s) 1201
Eco31I GGTCTC 1 cut(s) 485
Eco53kI GAGCTC 1 cut(s) 1199
Eco57I CTGAAG 2 cut(s) 603, 1022
EcoICRI GAGCTC 1 cut(s) 1199
EcoRII CCWGG 3 cut(s) 520, 639, 1312
EcoT22I ATGCAT 1 cut(s) 1069
EcoT38I GRGCYC 1 cut(s) 1201
FaeI CATG 9 cut(s) 42, 400, 439, 577, 704, 1058, 1100, 1376, 1445
FalI AAGNNNNNCTT 2 cut(s) 601, 633
FaqI GGGAC 2 cut(s) 229, 1192
FatI CATG 9 cut(s) 38, 396, 435, 573, 700, 1054, 1096, 1372, 1441
FbaI TGATCA 1 cut(s) 697
FblI GTMKAC 1 cut(s) 440
Fnu4HI GCNGC 1 cut(s) 70
FokI GGATG 2 cut(s) 485, 734
FriOI GRGCYC 1 cut(s) 1201
Fsp4HI GCNGC 1 cut(s) 70
FspBI CTAG 3 cut(s) 212, 659, 1122
GluI GCNGC 1 cut(s) 70
HaeIII GGCC 3 cut(s) 241, 525, 910
Hin1I GRCGYC 1 cut(s) 843
Hin1II CATG 9 cut(s) 42, 400, 439, 577, 704, 1058, 1100, 1376, 1445
HincII GTYRAC 1 cut(s) 1094
HindII GTYRAC 1 cut(s) 1094
HindIII AAGCTT 1 cut(s) 231
HinfI GANTC 7 cut(s) 497, 604, 797, 986, 1130, 1205, 1406
HphI GGTGA 2 cut(s) 232, 446
Hpy166II GTNNAC 5 cut(s) 57, 113, 441, 1094, 1370
Hpy188I TCNGA 3 cut(s) 393, 603, 622
Hpy188III TCNNGA 3 cut(s) 1145, 1202, 1356
Hpy8I GTNNAC 5 cut(s) 57, 113, 441, 1094, 1370
Hpy99I CGWCG 2 cut(s) 491, 848
HpyAV CCTTC 4 cut(s) 146, 782, 997, 1142
HpyCH4III ACNGT 2 cut(s) 61, 220
HpyCH4IV ACGT 3 cut(s) 843, 1090, 1153
HpyCH4V TGCA 7 cut(s) 857, 1067, 1216, 1229, 1370, 1376, 1384
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 1046
HpyF3I CTNAG 2 cut(s) 588, 1050
HpySE526I ACGT 3 cut(s) 843, 1090, 1153
Hsp92I GRCGYC 1 cut(s) 843
Hsp92II CATG 9 cut(s) 42, 400, 439, 577, 704, 1058, 1100, 1376, 1445
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 7 cut(s) 99, 393, 664, 697, 735, 1141, 1352
LguI GCTCTTC 1 cut(s) 1189
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 1 cut(s) 56
LweI GCATC 4 cut(s) 234, 712, 1076, 1104
MaeI CTAG 3 cut(s) 212, 659, 1122
MaeII ACGT 3 cut(s) 843, 1090, 1153
MaeIII GTNAC 1 cut(s) 1008
MalI GATC 7 cut(s) 101, 395, 666, 699, 737, 1143, 1354
MboI GATC 7 cut(s) 99, 393, 664, 697, 735, 1141, 1352
MboII GAAGA 7 cut(s) 301, 694, 875, 970, 976, 1206, 1322
MfeI CAATTG 1 cut(s) 1211
MflI RGATCY 2 cut(s) 1141, 1352
MhlI GDGCHC 3 cut(s) 207, 1201, 1372
MlsI TGGCCA 1 cut(s) 525
MluNI TGGCCA 1 cut(s) 525
MlyI GAGTC 1 cut(s) 1214
MmeI TCCRAC 4 cut(s) 265, 450, 1008, 1014
Mox20I TGGCCA 1 cut(s) 525
Mph1103I ATGCAT 1 cut(s) 1069
MroXI GAANNNNTTC 1 cut(s) 1329
MscI TGGCCA 1 cut(s) 525
MseI TTAA 1 cut(s) 537
Msp20I TGGCCA 1 cut(s) 525
MspR9I CCNGG 3 cut(s) 522, 641, 1314
MunI CAATTG 1 cut(s) 1211
Mva1269I GAATGC 2 cut(s) 859, 1437
MvaI CCWGG 3 cut(s) 522, 641, 1314
MwoI GCNNNNNNNGC 2 cut(s) 35, 1046
NdeII GATC 7 cut(s) 99, 393, 664, 697, 735, 1141, 1352
NlaIII CATG 9 cut(s) 42, 400, 439, 577, 704, 1058, 1100, 1376, 1445
NlaIV GGNNCC 1 cut(s) 240
NsiI ATGCAT 1 cut(s) 1069
NspI RCATGY 3 cut(s) 42, 439, 1376
PciSI GCTCTTC 1 cut(s) 1189
PcsI WCGNNNNNNNCGW 1 cut(s) 492
PctI GAATGC 2 cut(s) 859, 1437
PdmI GAANNNNTTC 1 cut(s) 1329
PfeI GAWTC 6 cut(s) 497, 604, 797, 986, 1130, 1406
PflMI CCANNNNNTGG 1 cut(s) 1442
PkrI GCNGC 1 cut(s) 71
PleI GAGTC 1 cut(s) 1213
PpsI GAGTC 1 cut(s) 1213
PshBI ATTAAT 1 cut(s) 537
Psp124BI GAGCTC 1 cut(s) 1201
Psp6I CCWGG 3 cut(s) 520, 639, 1312
PspGI CCWGG 3 cut(s) 520, 639, 1312
PspN4I GGNNCC 1 cut(s) 240
PspPI GGNCC 1 cut(s) 239
PsuI RGATCY 2 cut(s) 1141, 1352
RsaI GTAC 1 cut(s) 1160
RsaNI GTAC 1 cut(s) 1159
SacI GAGCTC 1 cut(s) 1201
SapI GCTCTTC 1 cut(s) 1189
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 7 cut(s) 99, 393, 664, 697, 735, 1141, 1352
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 1 cut(s) 1214
ScrFI CCNGG 3 cut(s) 522, 641, 1314
SduI GDGCHC 3 cut(s) 207, 1201, 1372
SfaNI GCATC 4 cut(s) 234, 712, 1076, 1104
SfcI CTRYAG 1 cut(s) 265
SmlI CTYRAG 3 cut(s) 73, 716, 781
SmoI CTYRAG 3 cut(s) 73, 716, 781
SpeI ACTAGT 1 cut(s) 1121
SsiI CCGC 3 cut(s) 45, 464, 1047
SspMI CTAG 3 cut(s) 212, 659, 1122
SstI GAGCTC 1 cut(s) 1201
StyD4I CCNGG 3 cut(s) 520, 639, 1312
TaaI ACNGT 2 cut(s) 61, 220
TaiI ACGT 3 cut(s) 846, 1093, 1156
TaqI TCGA 5 cut(s) 122, 323, 547, 738, 846
TaqII GACCGA 1 cut(s) 509
TfiI GAWTC 6 cut(s) 497, 604, 797, 986, 1130, 1406
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 3 cut(s) 64, 198, 1408
TseI GCWGC 1 cut(s) 69
TspDTI ATGAA 7 cut(s) 344, 393, 810, 876, 903, 1184, 1322
TspGWI ACGGA 2 cut(s) 92, 104
TspRI CASTG 3 cut(s) 64, 198, 1408
Van91I CCANNNNNTGG 1 cut(s) 1442
VneI GTGCAC 1 cut(s) 1368
VspI ATTAAT 1 cut(s) 537
XapI RAATTY 1 cut(s) 1326
XceI RCATGY 3 cut(s) 42, 439, 1376
XmiI GTMKAC 1 cut(s) 440
XmnI GAANNNNTTC 1 cut(s) 1329
XspI CTAG 3 cut(s) 212, 659, 1122
ZraI GACGTC 1 cut(s) 844
Zsp2I ATGCAT 1 cut(s) 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.