Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005600.1

Orthogroup ID

OG0003288

Physical Location & Seq

Genomic Coordinates Forward (+)

67865 .. 70934

Gene Structure 3070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005600.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atggagaagtactttgggaacgcttacagaggagacccgggggtcccacacgccgacccggaaaggtttgtgaacatatggatcggatccgctgccttctctgtgctgaccttgttcaatccctacatgtggcagctctccaatcagttcaattggcatgacaaggcaatgctgtttgagcagcatcactggaaaagggcactgaagaaagggcagccctatcaatttaagtggaatgagtacatggacaaggacctcagagatgcctactatatcaactggccggattcagctacttccattgctttacaagtgaatattagaaatcttggcaaatcgtgtggtcttgtgatcctcaagttaaagttttgtgttcctgacatagttttgcctgccggtgtaggagttgctcatgcattagttggggtgaacaagccagaattgcttccaaatgagttcagtccagtgattgatgtagccggcttcctctccgatggccaggagaaaagactagctcaggagattgctaatatagagaaggatactggattcaagttgagggttcttgctcagaactatcccgacacaccaggtttgcttattgttgataggagtttggtactgacaggttttgcttttgatattatggttttgggtgagatagttacaatgtatcgatattgtgtaggcttggcgattaaagatctctggcaagtggatgatagaactattgtctttgttgctgatcccacttttggcaatatactaaacttcaatgtgggagctttggttgatctagatgttccacgcagcttttggagtcgtctggctgggaagtatgggaatatgttttattggaaagagaaggtgaagttgcatcatcccttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0031977 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044436 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPM_phosphatase

Protein Analysis

296

Amino Acids

33.76

Weight (kDa)

7.05

Isoelectric Point (pI)

29.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52970 AT5G52970
fragaria_vesca	FvH4_6g16320
malus_domestica	MD12G1113500.v1.1
prunus_persica	Prupe.6G232400_v2.0.a1 Prupe.6G232400_v2.0.a1
pyrus_communis	pycom12g11240
rosa_chinensis	RchiOBHm_Chr3g0470171 RchiOBHm_Chr6g0296991
rosa_laevigata	RLG00000002142 RLG00000013529 RLG00000013767 RLG00000014335 RLG00000018311 RLG00000023700 RLG00000024291 RLG00000036706
rosa_multiflora	Rmu_sc0001548.1_g000020 Rmu_sc0005600.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032810 Rroxscaffold_6G00411090 Rroxscaffold_6G00411120
rosa_rugosa	Rorug03G0107500 Rorug07G0274800
rosa_samantha	Rh2CG519300 Rh3AG156600 Rh3BG180700 Rh3CG171500 Rh3DG194200
rosa_wichuraiana	Rw0G005420 Rw0G008560 Rw3G014850 Rw3G014880 Rw4G006390 Rw6G009380 Rw7G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AciI	CCGC	1 cut(s)	90
AclWI	GGATC	5 cut(s)	81, 89, 94, 346, 740
AcoI	YGGCCR	2 cut(s)	281, 496
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	3 cut(s)	11, 242, 621
AfiI	CCNNNNNNNGG	2 cut(s)	129, 755
AflIII	ACRYGT	1 cut(s)	126
AgsI	TTSAA	4 cut(s)	118, 151, 553, 775
AjnI	CCWGG	2 cut(s)	498, 589
AluBI	AGCT	5 cut(s)	136, 293, 515, 785, 813
AluI	AGCT	5 cut(s)	136, 293, 515, 785, 813
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	5 cut(s)	81, 89, 94, 346, 740
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	2 cut(s)	281, 496
ApeKI	GCWGC	5 cut(s)	92, 133, 181, 214, 810
Asp700I	GAANNNNTTC	1 cut(s)	444
AspS9I	GGNCC	2 cut(s)	43, 253
AsuC2I	CCSGG	3 cut(s)	38, 39, 59
AsuHPI	GGTGA	3 cut(s)	439, 668, 880
AvaI	CYCGRG	1 cut(s)	37
AvaII	GGWCC	2 cut(s)	43, 253
BaeGI	GKGCMC	1 cut(s)	202
BalI	TGGCCA	1 cut(s)	498
BamHI	GGATCC	1 cut(s)	86
BbvI	GCAGC	5 cut(s)	79, 145, 193, 226, 822
BccI	CCATC	1 cut(s)	488
BciT130I	CCWGG	2 cut(s)	500, 591
BciVI	GTATCC	1 cut(s)	535
BcnI	CCSGG	3 cut(s)	38, 39, 59
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	2 cut(s)	512, 797
BfuI	GTATCC	1 cut(s)	535
BglII	AGATCT	1 cut(s)	703
BisI	GCNGC	5 cut(s)	93, 134, 182, 215, 811
BlsI	GCNGC	5 cut(s)	94, 135, 183, 216, 812
BmcAI	AGTACT	1 cut(s)	11
Bme1390I	CCNGG	5 cut(s)	38, 39, 59, 500, 591
Bme18I	GGWCC	2 cut(s)	43, 253
BmeT110I	CYCGRG	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	43, 253
BmiI	GGNNCC	3 cut(s)	44, 45, 88
BmrFI	CCNGG	5 cut(s)	38, 39, 59, 500, 591
BmsI	GCATC	3 cut(s)	193, 253, 886
Bpu10I	CCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	341
BpuMI	CCSGG	3 cut(s)	38, 39, 59
Bsa29I	ATCGAT	1 cut(s)	676
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	37, 38
BsaXI	ACNNNNNCTCC	2 cut(s)	774, 804
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 755
Bse118I	RCCGGY	2 cut(s)	395, 479
Bse1I	ACTGG	4 cut(s)	194, 284, 464, 550
Bse3DI	GCAATG	2 cut(s)	174, 300
BseBI	CCWGG	2 cut(s)	500, 591
BseCI	ATCGAT	1 cut(s)	676
BseDI	CCNNGG	2 cut(s)	37, 38
BseGI	GGATG	2 cut(s)	724, 880
BseLI	CCNNNNNNNGG	2 cut(s)	129, 755
BseMI	GCAATG	2 cut(s)	174, 300
BseMII	CTCAG	3 cut(s)	271, 530, 584
BseNI	ACTGG	4 cut(s)	194, 284, 464, 550
BseRI	GAGGAG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	5 cut(s)	79, 145, 193, 226, 822
BseYI	CCCAGC	1 cut(s)	830
BshFI	GGCC	2 cut(s)	283, 498
BshVI	ATCGAT	1 cut(s)	676
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	5 cut(s)	38, 59, 284, 396, 480
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	2 cut(s)	129, 755
BsmAI	GTCTC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	283, 498
Bso31I	GGTCTC	1 cut(s)	27
BsoBI	CYCGRG	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	6 cut(s)	81, 86, 351, 703, 745, 793
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	2 cut(s)	283, 498
BspCNI	CTCAG	3 cut(s)	270, 529, 583
BspDI	ATCGAT	1 cut(s)	676
BspLI	GGNNCC	3 cut(s)	44, 45, 88
BspPI	GGATC	5 cut(s)	81, 89, 94, 346, 740
BspTNI	GGTCTC	1 cut(s)	27
BsrDI	GCAATG	2 cut(s)	174, 300
BsrFI	RCCGGY	2 cut(s)	395, 479
BsrI	ACTGG	4 cut(s)	194, 284, 464, 550
BssAI	RCCGGY	2 cut(s)	395, 479
BssECI	CCNNGG	2 cut(s)	37, 38
BssMI	GATC	6 cut(s)	81, 86, 351, 703, 745, 793
Bst2UI	CCWGG	2 cut(s)	500, 591
BstC8I	GCNNGC	2 cut(s)	393, 481
BstDEI	CTNAG	3 cut(s)	257, 516, 570
BstF5I	GGATG	2 cut(s)	724, 880
BstKTI	GATC	6 cut(s)	84, 89, 354, 706, 748, 796
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	6 cut(s)	81, 86, 351, 703, 745, 793
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 442
BstNI	CCWGG	2 cut(s)	500, 591
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	5 cut(s)	36, 37, 57, 498, 589
BstSLI	GKGCMC	1 cut(s)	202
BstV1I	GCAGC	5 cut(s)	79, 145, 193, 226, 822
BstX2I	RGATCY	2 cut(s)	86, 703
BstYI	RGATCY	2 cut(s)	86, 703
Bsu15I	ATCGAT	1 cut(s)	676
BsuI	GTATCC	1 cut(s)	535
BsuRI	GGCC	2 cut(s)	283, 498
BsuTUI	ATCGAT	1 cut(s)	676
BtsCI	GGATG	2 cut(s)	724, 880
BtsIMutI	CAGTG	3 cut(s)	187, 200, 471
Cac8I	GCNNGC	2 cut(s)	393, 481
Cfr10I	RCCGGY	2 cut(s)	395, 479
Cfr13I	GGNCC	2 cut(s)	43, 253
Cfr9I	CCCGGG	1 cut(s)	37
ClaI	ATCGAT	1 cut(s)	676
CsiI	ACCWGGT	1 cut(s)	589
Csp6I	GTAC	3 cut(s)	10, 241, 620
CspCI	CAANNNNNGTGG	4 cut(s)	212, 247, 322, 357
CviAII	CATG	4 cut(s)	127, 158, 244, 413
CviQI	GTAC	3 cut(s)	10, 241, 620
DdeI	CTNAG	3 cut(s)	257, 516, 570
DpnI	GATC	6 cut(s)	83, 88, 353, 705, 747, 795
DpnII	GATC	6 cut(s)	81, 86, 351, 703, 745, 793
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	2 cut(s)	281, 496
Eco31I	GGTCTC	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	43, 253
Eco57I	CTGAAG	1 cut(s)	224
Eco88I	CYCGRG	1 cut(s)	37
EcoO109I	RGGNCCY	2 cut(s)	43, 253
EcoRII	CCWGG	2 cut(s)	498, 589
EcoT22I	ATGCAT	1 cut(s)	418
FaeI	CATG	4 cut(s)	130, 161, 247, 416
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	4 cut(s)	126, 157, 243, 412
FauNDI	CATATG	1 cut(s)	77
Fnu4HI	GCNGC	5 cut(s)	93, 134, 182, 215, 811
FokI	GGATG	2 cut(s)	731, 867
Fsp4HI	GCNGC	5 cut(s)	93, 134, 182, 215, 811
FspBI	CTAG	2 cut(s)	512, 797
GluI	GCNGC	5 cut(s)	93, 134, 182, 215, 811
GsaI	CCCAGC	1 cut(s)	834
HaeIII	GGCC	2 cut(s)	283, 498
HapII	CCGG	5 cut(s)	38, 59, 284, 396, 480
Hin1II	CATG	4 cut(s)	130, 161, 247, 416
HinfI	GANTC	3 cut(s)	287, 549, 820
HpaII	CCGG	5 cut(s)	38, 59, 284, 396, 480
HphI	GGTGA	3 cut(s)	439, 668, 880
Hpy166II	GTNNAC	2 cut(s)	73, 430
Hpy188I	TCNGA	4 cut(s)	86, 260, 493, 573
Hpy188III	TCNNGA	4 cut(s)	377, 518, 581, 797
Hpy8I	GTNNAC	2 cut(s)	73, 430
HpyAV	CCTTC	3 cut(s)	106, 532, 859
HpyCH4V	TGCA	2 cut(s)	416, 877
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 442
HpyF3I	CTNAG	3 cut(s)	257, 516, 570
Hsp92II	CATG	4 cut(s)	130, 161, 247, 416
KflI	GGGWCCC	1 cut(s)	43
KroI	GCCGGC	1 cut(s)	479
KroNI	GCCGGC	1 cut(s)	481
Kzo9I	GATC	6 cut(s)	81, 86, 351, 703, 745, 793
LmnI	GCTCC	1 cut(s)	782
Lsp1109I	GCAGC	5 cut(s)	79, 145, 193, 226, 822
LweI	GCATC	3 cut(s)	193, 253, 886
MabI	ACCWGGT	1 cut(s)	589
MaeI	CTAG	2 cut(s)	512, 797
MaeIII	GTNAC	1 cut(s)	664
MalI	GATC	6 cut(s)	83, 88, 353, 705, 747, 795
MboI	GATC	6 cut(s)	81, 86, 351, 703, 745, 793
MboII	GAAGA	1 cut(s)	217
MfeI	CAATTG	1 cut(s)	151
MflI	RGATCY	2 cut(s)	86, 703
MhlI	GDGCHC	1 cut(s)	202
MlsI	TGGCCA	1 cut(s)	498
MluCI	AATT	3 cut(s)	151, 224, 440
MluNI	TGGCCA	1 cut(s)	498
MlyI	GAGTC	1 cut(s)	829
MnlI	CCTC	5 cut(s)	23, 266, 365, 497, 552
Mox20I	TGGCCA	1 cut(s)	498
Mph1103I	ATGCAT	1 cut(s)	418
MroNI	GCCGGC	1 cut(s)	479
MroXI	GAANNNNTTC	1 cut(s)	444
MscI	TGGCCA	1 cut(s)	498
MseI	TTAA	3 cut(s)	228, 362, 699
Msp20I	TGGCCA	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	5 cut(s)	38, 59, 284, 396, 480
MspR9I	CCNGG	5 cut(s)	38, 39, 59, 500, 591
MunI	CAATTG	1 cut(s)	151
MvaI	CCWGG	2 cut(s)	500, 591
MwoI	GCNNNNNNNGC	2 cut(s)	178, 442
NaeI	GCCGGC	1 cut(s)	481
NciI	CCSGG	3 cut(s)	38, 39, 59
NdeI	CATATG	1 cut(s)	77
NdeII	GATC	6 cut(s)	81, 86, 351, 703, 745, 793
NgoMIV	GCCGGC	1 cut(s)	479
NlaIII	CATG	4 cut(s)	130, 161, 247, 416
NlaIV	GGNNCC	3 cut(s)	44, 45, 88
NsiI	ATGCAT	1 cut(s)	418
NspI	RCATGY	1 cut(s)	130
PciI	ACATGT	1 cut(s)	126
PdiI	GCCGGC	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	287, 549
PkrI	GCNGC	5 cut(s)	94, 135, 183, 216, 812
PleI	GAGTC	1 cut(s)	828
PpsI	GAGTC	1 cut(s)	828
PpuMI	RGGWCCY	2 cut(s)	43, 253
PscI	ACATGT	1 cut(s)	126
Psp5II	RGGWCCY	2 cut(s)	43, 253
Psp6I	CCWGG	2 cut(s)	498, 589
PspFI	CCCAGC	1 cut(s)	830
PspGI	CCWGG	2 cut(s)	498, 589
PspN4I	GGNNCC	3 cut(s)	44, 45, 88
PspPI	GGNCC	2 cut(s)	43, 253
PspPPI	RGGWCCY	2 cut(s)	43, 253
PsuI	RGATCY	2 cut(s)	86, 703
RsaI	GTAC	3 cut(s)	11, 242, 621
RsaNI	GTAC	3 cut(s)	10, 241, 620
SaqAI	TTAA	3 cut(s)	228, 362, 699
SatI	GCNGC	5 cut(s)	93, 134, 182, 215, 811
Sau3AI	GATC	6 cut(s)	81, 86, 351, 703, 745, 793
Sau96I	GGNCC	2 cut(s)	43, 253
ScaI	AGTACT	1 cut(s)	11
SchI	GAGTC	1 cut(s)	829
ScrFI	CCNGG	5 cut(s)	38, 39, 59, 500, 591
SduI	GDGCHC	1 cut(s)	202
SexAI	ACCWGGT	1 cut(s)	589
SfaNI	GCATC	3 cut(s)	193, 253, 886
SinI	GGWCC	2 cut(s)	43, 253
SmaI	CCCGGG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	3 cut(s)	151, 224, 440
SsiI	CCGC	1 cut(s)	90
SspI	AATATT	1 cut(s)	319
SspMI	CTAG	2 cut(s)	512, 797
StyD4I	CCNGG	5 cut(s)	36, 37, 57, 498, 589
TaqI	TCGA	1 cut(s)	676
TasI	AATT	3 cut(s)	151, 224, 440
TatI	WGTACW	2 cut(s)	9, 240
TfiI	GAWTC	2 cut(s)	287, 549
Tru1I	TTAA	3 cut(s)	228, 362, 699
Tru9I	TTAA	3 cut(s)	228, 362, 699
TscAI	CASTG	3 cut(s)	194, 207, 471
TseI	GCWGC	5 cut(s)	92, 133, 181, 214, 810
TspMI	CCCGGG	1 cut(s)	37
TspRI	CASTG	3 cut(s)	194, 207, 471
VpaK11BI	GGWCC	2 cut(s)	43, 253
XbaI	TCTAGA	1 cut(s)	796
XceI	RCATGY	1 cut(s)	130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	813
XmaI	CCCGGG	1 cut(s)	37
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	2 cut(s)	512, 797
ZrmI	AGTACT	1 cut(s)	11
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.