Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003288

Physical Location & Seq

Genomic Coordinates Forward (+)

15911040 .. 15914058

Gene Structure 3019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG180700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCATTTCTCCTTCCTCCATGTTCATCTTCCACTTCCCAAACACCCTCACCTCTCTCATTCCATCCACCCATTACGTCCTCGTCAAATCTCTCTTCAACCCAAATTCCAACCAAATCCAGCAATGACTGGATTTCGAAATTCCGCTCCAAATCTTTAAATTTCGCGCTTTCGGGGGCTCTCACGCTCGGATTATCTCTCTCAGGTGTAGGAGTTGCTCATGCATTAGTTGGGGTGAACAAGCCAGAATTGCTTCCAAAAGAGTTCAGTCCAGTGATTGATGTAGCCGGCTTCCTCTCCGATGGCCAGGAGAAAAGGCTAGCTCAGGAGATTGCTAATATAGAGAAGGATACTGGATTCAAGTTGAGGGTTCTTGCTCAGAACTATCCTGACACACCAGGCTTGGCGATTAAAGATTTCTGGCAAGTGGATGATAGAACTATTGTGTTTGTTGCTGATCCCACATTTGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0031977 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044436 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPM_phosphatase

Protein Analysis

158

Amino Acids

16.96

Weight (kDa)

6.72

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52970 AT5G52970
fragaria_vesca	FvH4_6g16320
malus_domestica	MD12G1113500.v1.1
prunus_persica	Prupe.6G232400_v2.0.a1 Prupe.6G232400_v2.0.a1
pyrus_communis	pycom12g11240
rosa_chinensis	RchiOBHm_Chr3g0470171 RchiOBHm_Chr6g0296991
rosa_laevigata	RLG00000002142 RLG00000013529 RLG00000013767 RLG00000014335 RLG00000018311 RLG00000023700 RLG00000024291 RLG00000036706
rosa_multiflora	Rmu_sc0001548.1_g000020 Rmu_sc0005600.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032810 Rroxscaffold_6G00411090 Rroxscaffold_6G00411120
rosa_rugosa	Rorug03G0107500 Rorug07G0274800
rosa_samantha	Rh2CG519300 Rh3AG156600 Rh3BG180700 Rh3CG171500 Rh3DG194200
rosa_wichuraiana	Rw0G005420 Rw0G008560 Rw3G014850 Rw3G014880 Rw4G006390 Rw6G009380 Rw7G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	147
AccII	CGCG	1 cut(s)	167
AciI	CCGC	1 cut(s)	145
AclWI	GGATC	1 cut(s)	452
AcoI	YGGCCR	1 cut(s)	304
AcsI	RAATTY	3 cut(s)	105, 140, 160
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	2 cut(s)	99, 361
AjnI	CCWGG	2 cut(s)	306, 397
AluBI	AGCT	1 cut(s)	323
AluI	AGCT	1 cut(s)	323
AlwI	GGATC	1 cut(s)	452
AoxI	GGCC	1 cut(s)	304
ApoI	RAATTY	3 cut(s)	105, 140, 160
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	169
AsuHPI	GGTGA	2 cut(s)	42, 247
AsuII	TTCGAA	1 cut(s)	137
AsuNHI	GCTAGC	1 cut(s)	319
BalI	TGGCCA	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	181
BccI	CCATC	2 cut(s)	72, 296
BciT130I	CCWGG	2 cut(s)	308, 399
BciVI	GTATCC	1 cut(s)	343
BfaI	CTAG	1 cut(s)	320
BfuI	GTATCC	1 cut(s)	343
Bme1390I	CCNGG	2 cut(s)	308, 399
BmrFI	CCNGG	2 cut(s)	308, 399
BmtI	GCTAGC	1 cut(s)	323
Bpu10I	CCTNAGC	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	3 cut(s)	134, 272, 358
Bse3DI	GCAATG	1 cut(s)	130
BseBI	CCWGG	2 cut(s)	308, 399
BseGI	GGATG	2 cut(s)	64, 436
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	3 cut(s)	216, 338, 392
BseNI	ACTGG	3 cut(s)	134, 272, 358
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	1 cut(s)	467
BsnI	GGCC	1 cut(s)	306
Bsp119I	TTCGAA	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	457
BspACI	CCGC	1 cut(s)	145
BspANI	GGCC	1 cut(s)	306
BspCNI	CTCAG	3 cut(s)	215, 337, 391
BspFNI	CGCG	1 cut(s)	167
BspOI	GCTAGC	1 cut(s)	323
BspPI	GGATC	1 cut(s)	452
BspT104I	TTCGAA	1 cut(s)	137
BsrBI	CCGCTC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	3 cut(s)	134, 272, 358
BssAI	RCCGGY	1 cut(s)	287
BssMI	GATC	1 cut(s)	457
Bst2UI	CCWGG	2 cut(s)	308, 399
Bst6I	CTCTTC	1 cut(s)	100
BstBI	TTCGAA	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	289, 321
BstDEI	CTNAG	3 cut(s)	202, 324, 378
BstF5I	GGATG	2 cut(s)	64, 436
BstFNI	CGCG	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	1 cut(s)	460
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstNI	CCWGG	2 cut(s)	308, 399
BstSCI	CCNGG	2 cut(s)	306, 397
BstUI	CGCG	1 cut(s)	167
BsuI	GTATCC	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	306
BtsCI	GGATG	2 cut(s)	64, 436
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	289, 321
CfoI	GCGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	287
CviAII	CATG	2 cut(s)	21, 221
CviJI	RGCY	8 cut(s)	179, 244, 287, 291, 306, 319, 323, 402
CviKI_1	RGCY	8 cut(s)	179, 244, 287, 291, 306, 319, 323, 402
DdeI	CTNAG	3 cut(s)	202, 324, 378
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
DraI	TTTAAA	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	181
EcoRII	CCWGG	2 cut(s)	306, 397
EcoT22I	ATGCAT	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	181
FaeI	CATG	2 cut(s)	24, 224
FaiI	YATR	3 cut(s)	22, 222, 341
FatI	CATG	2 cut(s)	20, 220
FokI	GGATG	2 cut(s)	51, 443
FriOI	GRGCYC	1 cut(s)	181
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	306
HapII	CCGG	1 cut(s)	288
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	2 cut(s)	24, 224
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HinfI	GANTC	1 cut(s)	357
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	2 cut(s)	42, 247
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	3 cut(s)	191, 301, 381
Hpy188III	TCNNGA	2 cut(s)	326, 389
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	2 cut(s)	23, 340
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
HpyF3I	CTNAG	3 cut(s)	202, 324, 378
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	2 cut(s)	24, 224
HspAI	GCGC	1 cut(s)	167
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	457
LmnI	GCTCC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	1 cut(s)	77
MalI	GATC	1 cut(s)	459
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	1 cut(s)	457
MboII	GAAGA	2 cut(s)	21, 87
MhlI	GDGCHC	1 cut(s)	181
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	4 cut(s)	105, 140, 160, 248
MluNI	TGGCCA	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	6 cut(s)	27, 58, 63, 91, 305, 360
Mox20I	TGGCCA	1 cut(s)	306
Mph1103I	ATGCAT	1 cut(s)	226
MroNI	GCCGGC	1 cut(s)	287
MroXI	GAANNNNTTC	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	2 cut(s)	158, 411
Msp20I	TGGCCA	1 cut(s)	306
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	2 cut(s)	308, 399
MvaI	CCWGG	2 cut(s)	308, 399
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	250
NaeI	GCCGGC	1 cut(s)	289
NdeII	GATC	1 cut(s)	457
NgoMIV	GCCGGC	1 cut(s)	287
NheI	GCTAGC	1 cut(s)	319
NlaIII	CATG	2 cut(s)	24, 224
NsiI	ATGCAT	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	137
PdiI	GCCGGC	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	357
Psp6I	CCWGG	2 cut(s)	306, 397
PspGI	CCWGG	2 cut(s)	306, 397
SaqAI	TTAA	2 cut(s)	158, 411
Sau3AI	GATC	1 cut(s)	457
ScrFI	CCNGG	2 cut(s)	308, 399
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	4 cut(s)	55, 80, 208, 325
SfuI	TTCGAA	1 cut(s)	137
Sse9I	AATT	4 cut(s)	105, 140, 160, 248
SsiI	CCGC	1 cut(s)	145
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	2 cut(s)	306, 397
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	1 cut(s)	137
TasI	AATT	4 cut(s)	105, 140, 160, 248
TfiI	GAWTC	1 cut(s)	357
Tru1I	TTAA	2 cut(s)	158, 411
Tru9I	TTAA	2 cut(s)	158, 411
TscAI	CASTG	1 cut(s)	279
TspDTI	ATGAA	1 cut(s)	15
TspRI	CASTG	1 cut(s)	279
XapI	RAATTY	3 cut(s)	105, 140, 160
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.