Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003288

Physical Location & Seq

Genomic Coordinates Forward (+)

27229585 .. 27229929

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023700

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGCTTACTAGTTTGGATTCAATTACAGATCCAGAAGAACGTGAGTACCTACGAATGAAAAAAGCTGAAATAATGGAGAAAGGAGCTCGTGAGTCCCAACTACAACAATCACCTGCAACATTTGGATATACTAATTTTGGATATGGACAACACTATGGAGGAACACCTGGATATGGCGAAATTCCTCATTATGGAGGAAGTGATGGATCTGAAACAAGTGGTGCACATGCAGGAGTGCAGCATTCGCTGGTGGCAGTGGATCCAATACAATTGGTGGATATGGAGGAATGCCAGAACATGGAGGAAGTAATGATAGTCTGCCGGAATACTAACTGTGGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

12.49

Weight (kDa)

4.56

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52970 AT5G52970
fragaria_vesca	FvH4_6g16320
malus_domestica	MD12G1113500.v1.1
prunus_persica	Prupe.6G232400_v2.0.a1 Prupe.6G232400_v2.0.a1
pyrus_communis	pycom12g11240
rosa_chinensis	RchiOBHm_Chr3g0470171 RchiOBHm_Chr6g0296991
rosa_laevigata	RLG00000002142 RLG00000013529 RLG00000013767 RLG00000014335 RLG00000018311 RLG00000023700 RLG00000024291 RLG00000036706
rosa_multiflora	Rmu_sc0001548.1_g000020 Rmu_sc0005600.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032810 Rroxscaffold_6G00411090 Rroxscaffold_6G00411120
rosa_rugosa	Rorug03G0107500 Rorug07G0274800
rosa_samantha	Rh2CG519300 Rh3AG156600 Rh3BG180700 Rh3CG171500 Rh3DG194200
rosa_wichuraiana	Rw0G005420 Rw0G008560 Rw3G014850 Rw3G014880 Rw4G006390 Rw6G009380 Rw7G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	121
Acc36I	ACCTGC	1 cut(s)	121
AccB7I	CCANNNNNTGG	1 cut(s)	298
AclWI	GGATC	4 cut(s)	23, 214, 254, 267
AcsI	RAATTY	1 cut(s)	180
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	3 cut(s)	173, 191, 298
AgsI	TTSAA	1 cut(s)	21
AhlI	ACTAGT	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	2 cut(s)	65, 86
AluI	AGCT	2 cut(s)	65, 86
Alw21I	GWGCWC	2 cut(s)	88, 226
Alw44I	GTGCAC	1 cut(s)	222
AlwI	GGATC	4 cut(s)	23, 214, 254, 267
ApaLI	GTGCAC	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	238
ApoI	RAATTY	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	102
BaeGI	GKGCMC	1 cut(s)	226
BaeI	ACNNNNGTAYC	2 cut(s)	29, 62
BamHI	GGATCC	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	88
BauI	CACGAG	1 cut(s)	87
Bbv12I	GWGCWC	2 cut(s)	88, 226
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	168
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 191, 298
BseBI	CCWGG	1 cut(s)	168
BseLI	CCNNNNNNNGG	3 cut(s)	173, 191, 298
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	257
BsiHKAI	GWGCWC	2 cut(s)	88, 226
BsiSI	CCGG	1 cut(s)	322
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	3 cut(s)	173, 191, 298
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	2 cut(s)	241, 293
Bsp1286I	GDGCHC	2 cut(s)	88, 226
Bsp143I	GATC	3 cut(s)	28, 206, 259
BspLI	GGNNCC	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	121
BspPI	GGATC	4 cut(s)	23, 214, 254, 267
BssMI	GATC	3 cut(s)	28, 206, 259
BssSI	CACGAG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	335
BstKTI	GATC	3 cut(s)	31, 209, 262
BstMBI	GATC	3 cut(s)	28, 206, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	244
BstNI	CCWGG	1 cut(s)	168
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	166
BstSLI	GKGCMC	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	250
BstX2I	RGATCY	3 cut(s)	28, 206, 259
BstYI	RGATCY	3 cut(s)	28, 206, 259
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	261
BveI	ACCTGC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	2 cut(s)	227, 298
CviJI	RGCY	2 cut(s)	65, 86
CviKI_1	RGCY	2 cut(s)	65, 86
CviQI	GTAC	1 cut(s)	46
DpnI	GATC	3 cut(s)	30, 208, 261
DpnII	GATC	3 cut(s)	28, 206, 259
Ecl136II	GAGCTC	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	88
FaeI	CATG	2 cut(s)	230, 301
FaiI	YATR	8 cut(s)	129, 144, 156, 174, 192, 228, 281, 299
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	2 cut(s)	226, 297
Fnu4HI	GCNGC	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	239
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	1 cut(s)	239
HapII	CCGG	1 cut(s)	322
Hin1II	CATG	2 cut(s)	230, 301
HinfI	GANTC	2 cut(s)	17, 92
HpaII	CCGG	1 cut(s)	322
HphI	GGTGA	1 cut(s)	102
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	2 cut(s)	32, 89
Hpy8I	GTNNAC	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	4 cut(s)	116, 224, 230, 238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	244
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	2 cut(s)	230, 301
Kzo9I	GATC	3 cut(s)	28, 206, 259
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	8 cut(s)	45, 126, 153, 180, 216, 233, 305, 335
Lsp1109I	GCAGC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	1 cut(s)	40
MalI	GATC	3 cut(s)	30, 208, 261
MboI	GATC	3 cut(s)	28, 206, 259
MboII	GAAGA	1 cut(s)	47
MfeI	CAATTG	1 cut(s)	269
MflI	RGATCY	3 cut(s)	28, 206, 259
MhlI	GDGCHC	2 cut(s)	88, 226
MluCI	AATT	4 cut(s)	21, 133, 180, 269
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	5 cut(s)	152, 188, 195, 277, 295
MseI	TTAA	1 cut(s)	343
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	1 cut(s)	168
MunI	CAATTG	1 cut(s)	269
Mva1269I	GAATGC	2 cut(s)	241, 293
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	244
NdeII	GATC	3 cut(s)	28, 206, 259
NlaIII	CATG	2 cut(s)	230, 301
NlaIV	GGNNCC	1 cut(s)	261
NspI	RCATGY	1 cut(s)	230
PaqCI	CACCTGC	1 cut(s)	121
PctI	GAATGC	2 cut(s)	241, 293
PfeI	GAWTC	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	298
PkrI	GCNGC	1 cut(s)	240
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp124BI	GAGCTC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	1 cut(s)	261
PsuI	RGATCY	3 cut(s)	28, 206, 259
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SacI	GAGCTC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	343
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	3 cut(s)	28, 206, 259
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	2 cut(s)	88, 226
SetI	ASST	6 cut(s)	43, 51, 67, 88, 115, 169
SpeI	ACTAGT	1 cut(s)	8
Sse9I	AATT	4 cut(s)	21, 133, 180, 269
SspMI	CTAG	1 cut(s)	9
SstI	GAGCTC	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	1 cut(s)	43
TasI	AATT	4 cut(s)	21, 133, 180, 269
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	343
Tru9I	TTAA	1 cut(s)	343
TscAI	CASTG	1 cut(s)	261
TseI	GCWGC	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	261
Van91I	CCANNNNNTGG	1 cut(s)	298
VneI	GTGCAC	1 cut(s)	222
XapI	RAATTY	1 cut(s)	180
XceI	RCATGY	1 cut(s)	230
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.