Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003288

Physical Location & Seq

Genomic Coordinates Forward (+)

15023066 .. 15024653

Gene Structure 1588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G014850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCATTTCTCCTTCCTCCATGTTCATCTTCCACTTCCCAAACACCCTCACCTCTCTCATTCCATCCACCCATTACGTCCTCGTCAAATCTCTCTTCAACCCAAATTCCAACCAAATCCAGCCATGACTGGATTTCGAAATTTCGCTCCAAATCTTTGAATTTCGCGCTCTCTGGAGCTCTCACGCTCGGATTATCTCTCTCAGGTGTAGGAGTTGCTCATGCATTAGTTGGCGTGAACAAGCCAGAATTGCTTCCAAAAGAGTTCAGTCCAGTGATTGATGTAGCCGGCTTCCTCTCCGTCTCCGATGGCCAGCTCAGGAGATTGCTATTTGCTAATATAGAGAAGGATACTGGATTCAAGTTGAGGGTTCTTGCTCAGAACTATCCCGACACACCAGGCTTGGCGATTAAAGATTTCTGGCAAGTGGATGATAGAACTATTGTCTTTGTTGCTGATCCCACTTTTGGCAATATACTAAACTTCAATGTGGGAGCTTTGGTTGATCTAGATGTTCCACGCAGCTTTTGGAGTCTCTTACAGTATGGGAATATGTTTTATTGGAAAGAGAAGGGGGAAGATGGATCAATTGAAGCTGCTGTAACGGCAATATCTAACTGCTTCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0031977 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044436 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPM_phosphatase

Protein Analysis

209

Amino Acids

22.76

Weight (kDa)

6.28

Isoelectric Point (pI)

36.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52970 AT5G52970
fragaria_vesca	FvH4_6g16320
malus_domestica	MD12G1113500.v1.1
prunus_persica	Prupe.6G232400_v2.0.a1 Prupe.6G232400_v2.0.a1
pyrus_communis	pycom12g11240
rosa_chinensis	RchiOBHm_Chr3g0470171 RchiOBHm_Chr6g0296991
rosa_laevigata	RLG00000002142 RLG00000013529 RLG00000013767 RLG00000014335 RLG00000018311 RLG00000023700 RLG00000024291 RLG00000036706
rosa_multiflora	Rmu_sc0001548.1_g000020 Rmu_sc0005600.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032810 Rroxscaffold_6G00411090 Rroxscaffold_6G00411120
rosa_rugosa	Rorug03G0107500 Rorug07G0274800
rosa_samantha	Rh2CG519300 Rh3AG156600 Rh3BG180700 Rh3CG171500 Rh3DG194200
rosa_wichuraiana	Rw0G005420 Rw0G008560 Rw3G014850 Rw3G014880 Rw4G006390 Rw6G009380 Rw7G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	167
AclWI	GGATC	2 cut(s)	452, 592
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	3 cut(s)	105, 140, 160
AcuI	CTGAAG	1 cut(s)	607
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	5 cut(s)	99, 160, 361, 487, 593
AjnI	CCWGG	1 cut(s)	397
AluBI	AGCT	5 cut(s)	179, 316, 497, 525, 596
AluI	AGCT	5 cut(s)	179, 316, 497, 525, 596
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	2 cut(s)	307, 539
AlwI	GGATC	2 cut(s)	452, 592
AoxI	GGCC	1 cut(s)	310
ApeKI	GCWGC	2 cut(s)	522, 596
ApoI	RAATTY	3 cut(s)	105, 140, 160
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	42
AsuII	TTCGAA	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	312
BanII	GRGCYC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	534, 583
BccI	CCATC	3 cut(s)	72, 302, 575
BceAI	ACGGC	1 cut(s)	621
BciT130I	CCWGG	1 cut(s)	399
BciVI	GTATCC	1 cut(s)	343
BcoDI	GTCTC	2 cut(s)	307, 539
BfaI	CTAG	1 cut(s)	509
BfuI	GTATCC	1 cut(s)	343
BisI	GCNGC	2 cut(s)	523, 597
BlsI	GCNGC	2 cut(s)	524, 598
Bme1390I	CCNGG	1 cut(s)	399
BmrFI	CCNGG	1 cut(s)	399
BpmI	CTGGAG	1 cut(s)	195
Bpu10I	CCTNAGC	1 cut(s)	317
Bpu14I	TTCGAA	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	3 cut(s)	134, 272, 358
BseBI	CCWGG	1 cut(s)	399
BseGI	GGATG	2 cut(s)	64, 436
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMII	CTCAG	3 cut(s)	216, 331, 392
BseNI	ACTGG	3 cut(s)	134, 272, 358
BseXI	GCAGC	2 cut(s)	534, 583
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	2 cut(s)	307, 539
BsmBI	CGTCTC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	312
Bsp119I	TTCGAA	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	3 cut(s)	457, 505, 584
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	3 cut(s)	215, 330, 391
BspFNI	CGCG	1 cut(s)	167
BspPI	GGATC	2 cut(s)	452, 592
BspT104I	TTCGAA	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	3 cut(s)	134, 272, 358
BssAI	RCCGGY	1 cut(s)	287
BssMI	GATC	3 cut(s)	457, 505, 584
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	1 cut(s)	543
Bst6I	CTCTTC	1 cut(s)	100
BstBI	TTCGAA	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	289, 314
BstDEI	CTNAG	3 cut(s)	202, 317, 378
BstF5I	GGATG	2 cut(s)	64, 436
BstFNI	CGCG	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	3 cut(s)	460, 508, 587
BstMAI	GTCTC	2 cut(s)	307, 539
BstMBI	GATC	3 cut(s)	457, 505, 584
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 605
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	397
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	2 cut(s)	534, 583
BsuI	GTATCC	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	64, 436
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	289, 314
CfoI	GCGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	287
CviAII	CATG	3 cut(s)	21, 125, 221
DdeI	CTNAG	3 cut(s)	202, 317, 378
DpnI	GATC	3 cut(s)	459, 507, 586
DpnII	GATC	3 cut(s)	457, 505, 584
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	607
EcoICRI	GAGCTC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	397
EcoT22I	ATGCAT	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	181
Esp3I	CGTCTC	1 cut(s)	307
FaeI	CATG	3 cut(s)	24, 128, 224
FaiI	YATR	7 cut(s)	22, 126, 222, 341, 476, 546, 554
FatI	CATG	3 cut(s)	20, 124, 220
Fnu4HI	GCNGC	2 cut(s)	523, 597
FokI	GGATG	2 cut(s)	51, 443
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	2 cut(s)	523, 597
FspBI	CTAG	1 cut(s)	509
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	2 cut(s)	523, 597
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	312
HapII	CCGG	1 cut(s)	288
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	3 cut(s)	24, 128, 224
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HinfI	GANTC	2 cut(s)	357, 532
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	4 cut(s)	191, 307, 381, 626
Hpy188III	TCNNGA	4 cut(s)	174, 319, 389, 509
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	3 cut(s)	23, 340, 565
HpyCH4III	ACNGT	1 cut(s)	543
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 605
HpyF3I	CTNAG	3 cut(s)	202, 317, 378
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	3 cut(s)	24, 128, 224
HspAI	GCGC	1 cut(s)	167
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	457, 505, 584
LmnI	GCTCC	3 cut(s)	152, 176, 494
Lsp1109I	GCAGC	2 cut(s)	534, 583
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	3 cut(s)	459, 507, 586
MboI	GATC	3 cut(s)	457, 505, 584
MboII	GAAGA	3 cut(s)	21, 87, 590
MfeI	CAATTG	1 cut(s)	588
MhlI	GDGCHC	1 cut(s)	181
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	5 cut(s)	105, 140, 160, 248, 588
MluNI	TGGCCA	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	6 cut(s)	27, 58, 63, 91, 305, 360
Mox20I	TGGCCA	1 cut(s)	312
Mph1103I	ATGCAT	1 cut(s)	226
MroNI	GCCGGC	1 cut(s)	287
MroXI	GAANNNNTTC	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	1 cut(s)	411
Msp20I	TGGCCA	1 cut(s)	312
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	399
MunI	CAATTG	1 cut(s)	588
MvaI	CCWGG	1 cut(s)	399
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	2 cut(s)	250, 605
NaeI	GCCGGC	1 cut(s)	289
NdeII	GATC	3 cut(s)	457, 505, 584
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	3 cut(s)	24, 128, 224
NsiI	ATGCAT	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	137
PdiI	GCCGGC	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	357
PkrI	GCNGC	2 cut(s)	524, 598
PleI	GAGTC	1 cut(s)	540
PpsI	GAGTC	1 cut(s)	540
Psp124BI	GAGCTC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
SacI	GAGCTC	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	523, 597
Sau3AI	GATC	3 cut(s)	457, 505, 584
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	8 cut(s)	55, 80, 181, 208, 318, 499, 527, 598
SfuI	TTCGAA	1 cut(s)	137
Sse9I	AATT	5 cut(s)	105, 140, 160, 248, 588
SspMI	CTAG	1 cut(s)	509
SstI	GAGCTC	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	397
TaaI	ACNGT	1 cut(s)	543
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	1 cut(s)	137
TasI	AATT	5 cut(s)	105, 140, 160, 248, 588
TfiI	GAWTC	1 cut(s)	357
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	1 cut(s)	279
TseI	GCWGC	2 cut(s)	522, 596
TspDTI	ATGAA	1 cut(s)	15
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	1 cut(s)	279
XapI	RAATTY	3 cut(s)	105, 140, 160
XbaI	TCTAGA	1 cut(s)	508
XcmI	CCANNNNNNNNNTGG	1 cut(s)	525
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	1 cut(s)	509
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.