Rh2CG519300

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0003288
Physical Location & Seq
Forward (+)
69372050 .. 69377627
5578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG519300.1

Sequence Viewer

Length: 789 bp
ATGGAGAACAGCGATATCGGCGTCTTTGAGCAGCCAAACTTCGATGGCAAGGCTGATTATCTTCTCGAACTTTTGTTAACAGCCTTCTGTTCCGCCAACTCTGATGAAGACGAACAAGAGTTGTTTAGTGATGAACTTGCCTCACCTCATCGGCCTATTGGTGTAAAGAAAGCAAAGCTGAAAAGGAAAGAGTTGAATGAGAAGACCAAGATTGCTCAACAAGTGAAAGAATCCAACAAAGAACTGAAGGAGTTACTTGAAAAAAGCTTGTTGGAGAGAAATGCTTTTTCCGCTAAGCATGAGGAATATGCATCTCAAAAATTAGCTATTCAACGTCAACGTGAGGAGAGCAAAATCATGCTTACTAGTTTGGATTCAATTACAGATTCAGAAGGACATGAGTACCTACGAATGAAAAAAACTGAAATAATGGAGAGAAGAGCACGTGAGTCCCAACTACAACAATCACCTGCAACATTTGGATATACTAATTTTGGATATGGACAACACTATGGAGGAGGAAGTGGTGGATATAGACAACACTATGGAGGAACACCTGGATATGGTGAAATTCCTCATTATGGAGGAAGTGGTGGATCTGGAACAAGTGGTGCACATGCAGGAGTGCAACAATTCGGTGGTAGCAGTGGATCCAATACAGGTGGATATGGAGGAATGCCAGAACATGGAGGAAGGAGGGACCCAATTCCATGGTCTAATAGAATGCAGATTGCCCTGGATTCAGCGAGAGGTCTTGAATACATTCACGAGCATACTAAACCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

262

Amino Acids

28.99

Weight (kDa)

6.08

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 33 - 143 1.4e-09 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 478
Acc36I ACCTGC 1 cut(s) 478
AccB7I CCANNNNNTGG 1 cut(s) 686
AciI CCGC 2 cut(s) 93, 291
AclWI GGATC 3 cut(s) 604, 645, 658
AcsI RAATTY 1 cut(s) 570
AcuI CTGAAG 1 cut(s) 266
AcvI CACGTG 1 cut(s) 446
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 3 cut(s) 563, 581, 686
AgsI TTSAA 5 cut(s) 196, 260, 332, 378, 758
AhlI ACTAGT 1 cut(s) 365
AjnI CCWGG 2 cut(s) 556, 735
AluBI AGCT 3 cut(s) 178, 267, 326
AluI AGCT 3 cut(s) 178, 267, 326
Alw21I GWGCWC 2 cut(s) 445, 616
Alw44I GTGCAC 1 cut(s) 612
AlwI GGATC 3 cut(s) 604, 645, 658
AoxI GGCC 1 cut(s) 152
ApaLI GTGCAC 1 cut(s) 612
ApeKI GCWGC 1 cut(s) 31
ApoI RAATTY 1 cut(s) 570
Asp700I GAANNNNTTC 1 cut(s) 762
AspS9I GGNCC 1 cut(s) 700
AsuHPI GGTGA 3 cut(s) 135, 459, 578
AvaII GGWCC 1 cut(s) 700
BaeGI GKGCMC 1 cut(s) 616
BaeI ACNNNNGTAYC 2 cut(s) 386, 419
BamHI GGATCC 1 cut(s) 650
BauI CACGAG 1 cut(s) 767
BbrPI CACGTG 1 cut(s) 446
BbsI GAAGAC 2 cut(s) 114, 209
Bbv12I GWGCWC 2 cut(s) 445, 616
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 2 cut(s) 558, 737
BcuI ACTAGT 1 cut(s) 365
BfaI CTAG 1 cut(s) 366
BfuAI ACCTGC 1 cut(s) 478
BisI GCNGC 1 cut(s) 32
BlpI GCTNAGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 33
Bme1390I CCNGG 2 cut(s) 558, 737
Bme18I GGWCC 1 cut(s) 700
BmgT120I GGNCC 1 cut(s) 700
BmiI GGNNCC 3 cut(s) 652, 701, 702
BmrFI CCNGG 2 cut(s) 558, 737
BmsI GCATC 1 cut(s) 320
BpiI GAAGAC 2 cut(s) 114, 209
Bpu1102I GCTNAGC 1 cut(s) 294
BsaAI YACGTR 1 cut(s) 446
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 2 cut(s) 710, 735
Bsc4I CCNNNNNNNGG 3 cut(s) 563, 581, 686
BseBI CCWGG 2 cut(s) 558, 737
BseDI CCNNGG 2 cut(s) 710, 735
BseLI CCNNNNNNNGG 3 cut(s) 563, 581, 686
BseRI GAGGAG 2 cut(s) 359, 531
BseSI GKGCMC 1 cut(s) 616
BseXI GCAGC 1 cut(s) 43
BshFI GGCC 1 cut(s) 154
BsiHKAI GWGCWC 2 cut(s) 445, 616
BslFI GGGAC 2 cut(s) 436, 713
BslI CCNNNNNNNGG 3 cut(s) 563, 581, 686
BsmFI GGGAC 2 cut(s) 436, 713
BsmI GAATGC 2 cut(s) 681, 729
BsnI GGCC 1 cut(s) 154
Bsp1286I GDGCHC 2 cut(s) 445, 616
Bsp143I GATC 2 cut(s) 596, 650
Bsp1720I GCTNAGC 1 cut(s) 294
Bsp19I CCATGG 1 cut(s) 710
BspACI CCGC 2 cut(s) 93, 291
BspANI GGCC 1 cut(s) 154
BspLI GGNNCC 3 cut(s) 652, 701, 702
BspMI ACCTGC 1 cut(s) 478
BspPI GGATC 3 cut(s) 604, 645, 658
BspQI GCTCTTC 1 cut(s) 433
BssECI CCNNGG 2 cut(s) 710, 735
BssMI GATC 2 cut(s) 596, 650
BssNI GRCGYC 1 cut(s) 21
BssSI CACGAG 1 cut(s) 767
BssT1I CCWWGG 1 cut(s) 710
Bst2BI CACGAG 1 cut(s) 767
Bst2UI CCWGG 2 cut(s) 558, 737
Bst6I CTCTTC 1 cut(s) 433
BstACI GRCGYC 1 cut(s) 21
BstBAI YACGTR 1 cut(s) 446
BstDEI CTNAG 1 cut(s) 294
BstDSI CCRYGG 1 cut(s) 710
BstKTI GATC 2 cut(s) 599, 653
BstMBI GATC 2 cut(s) 596, 650
BstMWI GCNNNNNNNGC 2 cut(s) 18, 290
BstNI CCWGG 2 cut(s) 558, 737
BstNSI RCATGY 1 cut(s) 620
BstSCI CCNGG 2 cut(s) 556, 735
BstSLI GKGCMC 1 cut(s) 616
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 2 cut(s) 114, 209
BstX2I RGATCY 2 cut(s) 596, 650
BstXI CCANNNNNNTGG 1 cut(s) 711
BstYI RGATCY 2 cut(s) 596, 650
BsuRI GGCC 1 cut(s) 154
BtgI CCRYGG 1 cut(s) 710
BtsI GCAGTG 1 cut(s) 652
BtsIMutI CAGTG 1 cut(s) 652
BveI ACCTGC 1 cut(s) 478
Cfr13I GGNCC 1 cut(s) 700
CseI GACGC 1 cut(s) 10
Csp6I GTAC 1 cut(s) 403
CspCI CAANNNNNGTGG 2 cut(s) 643, 678
CviAII CATG 6 cut(s) 299, 358, 398, 617, 686, 711
CviJI RGCY 7 cut(s) 34, 53, 83, 154, 178, 267, 326
CviKI_1 RGCY 7 cut(s) 34, 53, 83, 154, 178, 267, 326
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 598, 652
DpnII GATC 2 cut(s) 596, 650
Eam1104I CTCTTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 433
EciI GGCGGA 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 710
Eco32I GATATC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 266
Eco72I CACGTG 1 cut(s) 446
EcoO109I RGGNCCY 1 cut(s) 700
EcoRII CCWGG 2 cut(s) 556, 735
EcoRV GATATC 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 710
EcoT22I ATGCAT 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 710
FaeI CATG 6 cut(s) 302, 361, 401, 620, 689, 714
FaqI GGGAC 2 cut(s) 436, 713
FatI CATG 6 cut(s) 298, 357, 397, 616, 685, 710
Fnu4HI GCNGC 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 32
FspBI CTAG 1 cut(s) 366
GluI GCNGC 1 cut(s) 32
HaeIII GGCC 1 cut(s) 154
HgaI GACGC 1 cut(s) 10
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 6 cut(s) 302, 361, 401, 620, 689, 714
HincII GTYRAC 2 cut(s) 78, 338
HindII GTYRAC 2 cut(s) 78, 338
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 5 cut(s) 230, 374, 386, 449, 740
HpaI GTTAAC 1 cut(s) 78
HphI GGTGA 3 cut(s) 135, 459, 578
Hpy166II GTNNAC 3 cut(s) 78, 338, 614
Hpy188I TCNGA 2 cut(s) 103, 391
Hpy188III TCNNGA 4 cut(s) 65, 600, 755, 767
Hpy8I GTNNAC 3 cut(s) 78, 338, 614
HpyAV CCTTC 4 cut(s) 94, 241, 386, 687
HpyCH4IV ACGT 3 cut(s) 334, 340, 445
HpyCH4V TGCA 6 cut(s) 311, 473, 614, 620, 628, 727
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 290
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 3 cut(s) 334, 340, 445
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 6 cut(s) 302, 361, 401, 620, 689, 714
KflI GGGWCCC 1 cut(s) 700
KspAI GTTAAC 1 cut(s) 78
Kzo9I GATC 2 cut(s) 596, 650
LguI GCTCTTC 1 cut(s) 433
LpnPI CCDG 9 cut(s) 483, 543, 570, 585, 606, 645, 693, 722, 749
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 320
MaeI CTAG 1 cut(s) 366
MaeII ACGT 3 cut(s) 334, 340, 445
MaeIII GTNAC 1 cut(s) 252
MalI GATC 2 cut(s) 598, 652
MboI GATC 2 cut(s) 596, 650
MboII GAAGA 4 cut(s) 53, 119, 214, 450
MflI RGATCY 2 cut(s) 596, 650
MhlI GDGCHC 2 cut(s) 445, 616
MluCI AATT 6 cut(s) 320, 378, 490, 570, 632, 705
MlyI GAGTC 1 cut(s) 458
MmeI TCCRAC 2 cut(s) 252, 258
Mph1103I ATGCAT 1 cut(s) 313
MroXI GAANNNNTTC 1 cut(s) 762
MseI TTAA 2 cut(s) 77, 787
MspR9I CCNGG 2 cut(s) 558, 737
Mva1269I GAATGC 2 cut(s) 681, 729
MvaI CCWGG 2 cut(s) 558, 737
MwoI GCNNNNNNNGC 2 cut(s) 18, 290
NcoI CCATGG 1 cut(s) 710
NdeII GATC 2 cut(s) 596, 650
NlaIII CATG 6 cut(s) 302, 361, 401, 620, 689, 714
NlaIV GGNNCC 3 cut(s) 652, 701, 702
NsiI ATGCAT 1 cut(s) 313
NspI RCATGY 1 cut(s) 620
PaqCI CACCTGC 1 cut(s) 478
PciSI GCTCTTC 1 cut(s) 433
PctI GAATGC 2 cut(s) 681, 729
PdmI GAANNNNTTC 1 cut(s) 762
PfeI GAWTC 4 cut(s) 230, 374, 386, 740
PflMI CCANNNNNTGG 1 cut(s) 686
PkrI GCNGC 1 cut(s) 33
PleI GAGTC 1 cut(s) 457
PmaCI CACGTG 1 cut(s) 446
PmlI CACGTG 1 cut(s) 446
PpsI GAGTC 1 cut(s) 457
Ppu21I YACGTR 1 cut(s) 446
PpuMI RGGWCCY 1 cut(s) 700
Psp5II RGGWCCY 1 cut(s) 700
Psp6I CCWGG 2 cut(s) 556, 735
PspCI CACGTG 1 cut(s) 446
PspGI CCWGG 2 cut(s) 556, 735
PspN4I GGNNCC 3 cut(s) 652, 701, 702
PspPI GGNCC 1 cut(s) 700
PspPPI RGGWCCY 1 cut(s) 700
PsuI RGATCY 2 cut(s) 596, 650
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SapI GCTCTTC 1 cut(s) 433
SaqAI TTAA 2 cut(s) 77, 787
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 2 cut(s) 596, 650
Sau96I GGNCC 1 cut(s) 700
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 2 cut(s) 558, 737
SduI GDGCHC 2 cut(s) 445, 616
SfaNI GCATC 1 cut(s) 320
SinI GGWCC 1 cut(s) 700
SpeI ACTAGT 1 cut(s) 365
Sse9I AATT 6 cut(s) 320, 378, 490, 570, 632, 705
SsiI CCGC 2 cut(s) 93, 291
SspMI CTAG 1 cut(s) 366
StyD4I CCNGG 2 cut(s) 556, 735
StyI CCWWGG 1 cut(s) 710
TaiI ACGT 3 cut(s) 337, 343, 448
TaqI TCGA 2 cut(s) 42, 66
TasI AATT 6 cut(s) 320, 378, 490, 570, 632, 705
TfiI GAWTC 4 cut(s) 230, 374, 386, 740
Tru1I TTAA 2 cut(s) 77, 787
Tru9I TTAA 2 cut(s) 77, 787
TscAI CASTG 1 cut(s) 652
TseI GCWGC 1 cut(s) 31
TspDTI ATGAA 3 cut(s) 120, 147, 428
TspRI CASTG 1 cut(s) 652
Van91I CCANNNNNTGG 1 cut(s) 686
VneI GTGCAC 1 cut(s) 612
VpaK11BI GGWCC 1 cut(s) 700
XapI RAATTY 1 cut(s) 570
XceI RCATGY 1 cut(s) 620
XmnI GAANNNNTTC 1 cut(s) 762
XspI CTAG 1 cut(s) 366
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.