Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00213

Orthogroup ID

OG0003288

Physical Location & Seq

Genomic Coordinates Forward (+)

25209 .. 26448

Gene Structure 1240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G005420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCAGATGTTAGGCATAAGAAAGTTGTCCATCGAAAAGGAAATTTTACTGTTCAAGAAGATCAACTCCTGTGTCATTTATATCTTTCAATTTCTCAGGATTCTATCGAAGGTGTTAATCAAAAGAAAGATAAAGTATGGGAAAGAATAACTGATTTGTGGAATAAGGATAAGGATGAACACCAGATGCGAAGCGCCAAGTCTCTTCAAAGTCGATTTTCTGATCTTAACTATTGTGTAAGCAAATTTCGTGGTTCACTTCGCCAGGTGGAAAATCGGAATCAAAGTGGTGCTTCAGAGAAAGATATTTATGCCCAGGCAAAACAACATCTACTAGAAGATCCTAACTATACAAAGAAGAAGCTTCAATTTGATCATGTGTGGCCTATTCTCAAGGATGCTGAAAAATGGACCGACAATGATGAAGACGAACAAGAGCTGTTTAGTGATGAACTTGCCTCACCTCACCGGCCTATTGGTAGAAATGCTTTTTCCTCTAAGCATGAGGAATATGTATCTCAAAAATTAGCTATTCAACGTCAACGTGAGGAGAGCAAGATCATGCTTACTAGAATGAAAAAAACTGAAATAATGGAGAGAAGAGCTCGTGAGTCCCAACTACAACAATCACCTACACCATTTGGCTATGGTAATTTTGGATATGGACAACACTATGGAGGAGGAAGTGGTGGATATGGACAACATTATGGAGGAACAGCTGGATATGGTGAAATTCCTCATTATGGAGGAAGTGGTGGATCTGGAACAAGTGGTGCACATGCAGGAGTGCAACAATTCGGTGGTAGCAGTAGATCCAATACACATGGTGGATATGGAGGAATGCCAGAACATGGAGGAAGTAATGATAGTCTACCGGAATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

294

Amino Acids

33.19

Weight (kDa)

7.26

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52970 AT5G52970
fragaria_vesca	FvH4_6g16320
malus_domestica	MD12G1113500.v1.1
prunus_persica	Prupe.6G232400_v2.0.a1 Prupe.6G232400_v2.0.a1
pyrus_communis	pycom12g11240
rosa_chinensis	RchiOBHm_Chr3g0470171 RchiOBHm_Chr6g0296991
rosa_laevigata	RLG00000002142 RLG00000013529 RLG00000013767 RLG00000014335 RLG00000018311 RLG00000023700 RLG00000024291 RLG00000036706
rosa_multiflora	Rmu_sc0001548.1_g000020 Rmu_sc0005600.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032810 Rroxscaffold_6G00411090 Rroxscaffold_6G00411120
rosa_rugosa	Rorug03G0107500 Rorug07G0274800
rosa_samantha	Rh2CG519300 Rh3AG156600 Rh3BG180700 Rh3CG171500 Rh3DG194200
rosa_wichuraiana	Rw0G005420 Rw0G008560 Rw3G014850 Rw3G014880 Rw4G006390 Rw6G009380 Rw7G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	851
AccI	GTMKAC	1 cut(s)	871
AclWI	GGATC	3 cut(s)	335, 766, 807
AcsI	RAATTY	3 cut(s)	43, 245, 732
AcuI	CTGAAG	1 cut(s)	279
AdeI	CACNNNGTG	1 cut(s)	827
AfiI	CCNNNNNNNGG	2 cut(s)	743, 851
AgsI	TTSAA	5 cut(s)	56, 90, 209, 368, 536
AjnI	CCWGG	2 cut(s)	264, 315
AluBI	AGCT	5 cut(s)	364, 439, 530, 605, 719
AluI	AGCT	5 cut(s)	364, 439, 530, 605, 719
Alw21I	GWGCWC	2 cut(s)	607, 778
Alw26I	GTCTC	1 cut(s)	207
Alw44I	GTGCAC	1 cut(s)	774
AlwI	GGATC	3 cut(s)	335, 766, 807
AoxI	GGCC	2 cut(s)	383, 470
ApaLI	GTGCAC	1 cut(s)	774
ApoI	RAATTY	3 cut(s)	43, 245, 732
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	411
AsuHPI	GGTGA	4 cut(s)	453, 458, 621, 740
AvaII	GGWCC	1 cut(s)	411
BaeGI	GKGCMC	1 cut(s)	778
BanII	GRGCYC	1 cut(s)	607
BauI	CACGAG	1 cut(s)	606
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	2 cut(s)	607, 778
BccI	CCATC	1 cut(s)	39
BciT130I	CCWGG	2 cut(s)	266, 317
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	2 cut(s)	335, 570
BfoI	RGCGCY	1 cut(s)	198
Bme1390I	CCNGG	2 cut(s)	266, 317
Bme18I	GGWCC	1 cut(s)	411
BmgT120I	GGNCC	1 cut(s)	411
BmrFI	CCNGG	2 cut(s)	266, 317
BmsI	GCATC	2 cut(s)	177, 388
BpiI	GAAGAC	1 cut(s)	432
BplI	GAGNNNNNCTC	2 cut(s)	589, 621
BpuEI	CTTGAG	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	874
Bsc4I	CCNNNNNNNGG	2 cut(s)	743, 851
Bse118I	RCCGGY	1 cut(s)	468
BseBI	CCWGG	2 cut(s)	266, 317
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	2 cut(s)	181, 403
BseLI	CCNNNNNNNGG	2 cut(s)	743, 851
BseMII	CTCAG	1 cut(s)	110
BseRI	GAGGAG	2 cut(s)	563, 693
BseSI	GKGCMC	1 cut(s)	778
BshFI	GGCC	2 cut(s)	385, 472
BsiHKAI	GWGCWC	2 cut(s)	607, 778
BsiSI	CCGG	2 cut(s)	469, 875
BslFI	GGGAC	1 cut(s)	598
BslI	CCNNNNNNNGG	2 cut(s)	743, 851
BsmAI	GTCTC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	598
BsmI	GAATGC	1 cut(s)	846
BsnI	GGCC	2 cut(s)	385, 472
Bsp1286I	GDGCHC	2 cut(s)	607, 778
Bsp143I	GATC	7 cut(s)	61, 223, 340, 373, 558, 758, 812
BspANI	GGCC	2 cut(s)	385, 472
BspCNI	CTCAG	1 cut(s)	109
BspPI	GGATC	3 cut(s)	335, 766, 807
BspQI	GCTCTTC	1 cut(s)	595
BsrFI	RCCGGY	1 cut(s)	468
BssAI	RCCGGY	1 cut(s)	468
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	7 cut(s)	61, 223, 340, 373, 558, 758, 812
BssSI	CACGAG	1 cut(s)	606
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	2 cut(s)	266, 317
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	2 cut(s)	210, 595
BstDEI	CTNAG	2 cut(s)	96, 498
BstF5I	GGATG	2 cut(s)	181, 403
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	7 cut(s)	64, 226, 343, 376, 561, 761, 815
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	7 cut(s)	61, 223, 340, 373, 558, 758, 812
BstNI	CCWGG	2 cut(s)	266, 317
BstNSI	RCATGY	1 cut(s)	782
BstSCI	CCNGG	2 cut(s)	264, 315
BstSLI	GKGCMC	1 cut(s)	778
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	3 cut(s)	340, 758, 812
BstYI	RGATCY	3 cut(s)	340, 758, 812
BsuRI	GGCC	2 cut(s)	385, 472
BtsCI	GGATG	2 cut(s)	181, 403
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	468
Cfr13I	GGNCC	1 cut(s)	411
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviAII	CATG	6 cut(s)	377, 503, 562, 779, 824, 851
CviJI	RGCY	8 cut(s)	364, 385, 439, 472, 530, 605, 645, 719
CviKI_1	RGCY	8 cut(s)	364, 385, 439, 472, 530, 605, 645, 719
DdeI	CTNAG	2 cut(s)	96, 498
DpnI	GATC	7 cut(s)	63, 225, 342, 375, 560, 760, 814
DpnII	GATC	7 cut(s)	61, 223, 340, 373, 558, 758, 812
DraIII	CACNNNGTG	1 cut(s)	827
Eam1104I	CTCTTC	2 cut(s)	210, 595
EarI	CTCTTC	2 cut(s)	210, 595
Ecl136II	GAGCTC	1 cut(s)	605
Eco24I	GRGCYC	1 cut(s)	607
Eco47I	GGWCC	1 cut(s)	411
Eco53kI	GAGCTC	1 cut(s)	605
Eco57I	CTGAAG	1 cut(s)	279
EcoICRI	GAGCTC	1 cut(s)	605
EcoRII	CCWGG	2 cut(s)	264, 315
EcoT38I	GRGCYC	1 cut(s)	607
FaeI	CATG	6 cut(s)	380, 506, 565, 782, 827, 854
FalI	AAGNNNNNCTT	2 cut(s)	277, 309
FaqI	GGGAC	1 cut(s)	598
FatI	CATG	6 cut(s)	376, 502, 561, 778, 823, 850
FbaI	TGATCA	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	871
FokI	GGATG	2 cut(s)	188, 410
FriOI	GRGCYC	1 cut(s)	607
FspBI	CTAG	2 cut(s)	335, 570
GlaI	GCGC	1 cut(s)	196
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	385, 472
HapII	CCGG	2 cut(s)	469, 875
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	6 cut(s)	380, 506, 565, 782, 827, 854
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	542
HindII	GTYRAC	1 cut(s)	542
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	3 cut(s)	101, 280, 611
HpaII	CCGG	2 cut(s)	469, 875
HphI	GGTGA	4 cut(s)	453, 458, 621, 740
Hpy166II	GTNNAC	4 cut(s)	257, 542, 776, 872
Hpy188I	TCNGA	3 cut(s)	223, 279, 298
Hpy188III	TCNNGA	4 cut(s)	56, 98, 608, 762
Hpy8I	GTNNAC	4 cut(s)	257, 542, 776, 872
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	2 cut(s)	538, 544
HpyCH4V	TGCA	3 cut(s)	776, 782, 790
HpyF3I	CTNAG	2 cut(s)	96, 498
HpySE526I	ACGT	2 cut(s)	538, 544
Hsp92II	CATG	6 cut(s)	380, 506, 565, 782, 827, 854
HspAI	GCGC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	7 cut(s)	61, 223, 340, 373, 558, 758, 812
LguI	GCTCTTC	1 cut(s)	595
LweI	GCATC	2 cut(s)	177, 388
MaeI	CTAG	2 cut(s)	335, 570
MaeII	ACGT	2 cut(s)	538, 544
MalI	GATC	7 cut(s)	63, 225, 342, 375, 560, 760, 814
MboI	GATC	7 cut(s)	61, 223, 340, 373, 558, 758, 812
MboII	GAAGA	6 cut(s)	71, 197, 350, 370, 437, 612
MflI	RGATCY	3 cut(s)	340, 758, 812
MhlI	GDGCHC	2 cut(s)	607, 778
MluCI	AATT	8 cut(s)	43, 90, 245, 368, 524, 652, 732, 794
MlyI	GAGTC	1 cut(s)	620
MseI	TTAA	2 cut(s)	117, 228
MspA1I	CMGCKG	1 cut(s)	719
MspI	CCGG	2 cut(s)	469, 875
MspR9I	CCNGG	2 cut(s)	266, 317
Mva1269I	GAATGC	1 cut(s)	846
MvaI	CCWGG	2 cut(s)	266, 317
NdeII	GATC	7 cut(s)	61, 223, 340, 373, 558, 758, 812
NlaIII	CATG	6 cut(s)	380, 506, 565, 782, 827, 854
NspI	RCATGY	1 cut(s)	782
PciSI	GCTCTTC	1 cut(s)	595
PctI	GAATGC	1 cut(s)	846
PfeI	GAWTC	2 cut(s)	101, 280
PflMI	CCANNNNNTGG	1 cut(s)	851
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
Psp124BI	GAGCTC	1 cut(s)	607
Psp6I	CCWGG	2 cut(s)	264, 315
PspGI	CCWGG	2 cut(s)	264, 315
PspPI	GGNCC	1 cut(s)	411
PsuI	RGATCY	3 cut(s)	340, 758, 812
PvuII	CAGCTG	1 cut(s)	719
SacI	GAGCTC	1 cut(s)	607
SapI	GCTCTTC	1 cut(s)	595
SaqAI	TTAA	2 cut(s)	117, 228
Sau3AI	GATC	7 cut(s)	61, 223, 340, 373, 558, 758, 812
Sau96I	GGNCC	1 cut(s)	411
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	2 cut(s)	266, 317
SduI	GDGCHC	2 cut(s)	607, 778
SfaNI	GCATC	2 cut(s)	177, 388
SinI	GGWCC	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	8 cut(s)	43, 90, 245, 368, 524, 652, 732, 794
SspMI	CTAG	2 cut(s)	335, 570
SstI	GAGCTC	1 cut(s)	607
StyD4I	CCNGG	2 cut(s)	264, 315
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	2 cut(s)	541, 547
TaqI	TCGA	3 cut(s)	34, 108, 214
TaqII	GACCGA	1 cut(s)	428
TasI	AATT	8 cut(s)	43, 90, 245, 368, 524, 652, 732, 794
TfiI	GAWTC	2 cut(s)	101, 280
Tru1I	TTAA	2 cut(s)	117, 228
Tru9I	TTAA	2 cut(s)	117, 228
TspDTI	ATGAA	4 cut(s)	192, 438, 465, 590
Van91I	CCANNNNNTGG	1 cut(s)	851
VneI	GTGCAC	1 cut(s)	774
VpaK11BI	GGWCC	1 cut(s)	411
XapI	RAATTY	3 cut(s)	43, 245, 732
XceI	RCATGY	1 cut(s)	782
XmiI	GTMKAC	1 cut(s)	871
XspI	CTAG	2 cut(s)	335, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.