Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001548.1

Orthogroup ID

OG0003288

Physical Location & Seq

Genomic Coordinates Forward (+)

89317 .. 90368

Gene Structure 1052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001548.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atgcgaagcgccaagtctcttcaaagtcgattttctgatcttaactattgcgtaagcaaatttcgtggttcacttcgccaggtggaaaatcggaatcaaagtggtgcttcagagaaagatatttatgcccagacaaaacaacatctactagatgatcctaactatacaaagaagaagtttcaattagatcatgtgtggcctattctcaaggatgctgaaaaatggaccaataatggtagaagttcaactaaaccacgacaaaaaaattactcaagtgaaggatatgaatcaacgtctcgcacatcacaatcgtcaggtacattaccagttgatgtcaatttgaatgcaaatgaagacgaacaagagctgtttagtgatgaacttgcctcacctcaccggcctattggtgtaaagaaagcaaagctgaaaaggaaagagttgaacgagaagactaagattgctcaacaagtgaaaaaatccaaccaagaactgaaggagttacttgaaaaaaacttgttggagagaaatgatttttcctctaagcatgaggaatatgcatctcaaaaattagctattcaacgtcaacgtaaggagaccaagatcatgcttactagtttggattcaattacagatccaaaaggacgtgagtacttacgaatgaaaaaaactgaaataatggagagaagagctcgtgagtcccaactacaacaatcacctgcaacatttggctatggtaattttggatatggacaacactatggaggaggaagtggtggatatggacaacattatggaggaacagctggatatggtgaaattcctcattatggaggaagtggtggatctggaacaattggtgcacatgcaggagtgcaacaattcggtggtagcaatagatccaatacacatggcggatatggaggaatgccagaacatggaggaagtaatgatagtctaccggaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

321

Amino Acids

35.83

Weight (kDa)

9.36

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52970 AT5G52970
fragaria_vesca	FvH4_6g16320
malus_domestica	MD12G1113500.v1.1
prunus_persica	Prupe.6G232400_v2.0.a1 Prupe.6G232400_v2.0.a1
pyrus_communis	pycom12g11240
rosa_chinensis	RchiOBHm_Chr3g0470171 RchiOBHm_Chr6g0296991
rosa_laevigata	RLG00000002142 RLG00000013529 RLG00000013767 RLG00000014335 RLG00000018311 RLG00000023700 RLG00000024291 RLG00000036706
rosa_multiflora	Rmu_sc0001548.1_g000020 Rmu_sc0005600.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032810 Rroxscaffold_6G00411090 Rroxscaffold_6G00411120
rosa_rugosa	Rorug03G0107500 Rorug07G0274800
rosa_samantha	Rh2CG519300 Rh3AG156600 Rh3BG180700 Rh3CG171500 Rh3DG194200
rosa_wichuraiana	Rw0G005420 Rw0G008560 Rw3G014850 Rw3G014880 Rw4G006390 Rw6G009380 Rw7G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	724
Acc36I	ACCTGC	1 cut(s)	724
AccB7I	CCANNNNNTGG	1 cut(s)	935
AccI	GTMKAC	1 cut(s)	955
AciI	CCGC	1 cut(s)	912
AclWI	GGATC	4 cut(s)	149, 626, 850, 891
AcsI	RAATTY	2 cut(s)	59, 816
AcuI	CTGAAG	2 cut(s)	93, 512
AfaI	GTAC	2 cut(s)	319, 650
AfiI	CCNNNNNNNGG	2 cut(s)	827, 935
AgsI	TTSAA	8 cut(s)	23, 182, 246, 343, 442, 506, 578, 624
AhlI	ACTAGT	1 cut(s)	611
AjiI	CACGTC	1 cut(s)	644
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	5 cut(s)	367, 424, 572, 689, 803
AluI	AGCT	5 cut(s)	367, 424, 572, 689, 803
Alw21I	GWGCWC	2 cut(s)	691, 862
Alw26I	GTCTC	3 cut(s)	21, 300, 587
Alw44I	GTGCAC	1 cut(s)	858
AlwI	GGATC	4 cut(s)	149, 626, 850, 891
AoxI	GGCC	2 cut(s)	197, 398
ApaLI	GTGCAC	1 cut(s)	858
ApoI	RAATTY	2 cut(s)	59, 816
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	225
AsuHPI	GGTGA	4 cut(s)	381, 386, 705, 824
AvaII	GGWCC	1 cut(s)	225
BaeGI	GKGCMC	1 cut(s)	862
BanII	GRGCYC	1 cut(s)	691
BauI	CACGAG	1 cut(s)	690
BbsI	GAAGAC	2 cut(s)	360, 455
Bbv12I	GWGCWC	2 cut(s)	691, 862
BciT130I	CCWGG	1 cut(s)	80
BcoDI	GTCTC	3 cut(s)	21, 300, 587
BcuI	ACTAGT	1 cut(s)	611
BfaI	CTAG	2 cut(s)	149, 612
BfoI	RGCGCY	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	724
BmcAI	AGTACT	1 cut(s)	650
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	225
BmgBI	CACGTC	1 cut(s)	644
BmgT120I	GGNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	2 cut(s)	202, 566
BpiI	GAAGAC	2 cut(s)	360, 455
BplI	GAGNNNNNCTC	2 cut(s)	673, 705
BpuEI	CTTGAG	2 cut(s)	191, 256
BsaBI	GATNNNNATC	1 cut(s)	286
BsaI	GGTCTC	1 cut(s)	587
BsaWI	WCCGGW	1 cut(s)	958
Bsc4I	CCNNNNNNNGG	2 cut(s)	827, 935
Bse118I	RCCGGY	1 cut(s)	396
Bse1I	ACTGG	1 cut(s)	326
Bse8I	GATNNNNATC	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	217
BseJI	GATNNNNATC	1 cut(s)	286
BseLI	CCNNNNNNNGG	2 cut(s)	827, 935
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	777
BseSI	GKGCMC	1 cut(s)	862
BshFI	GGCC	2 cut(s)	199, 400
BsiHKAI	GWGCWC	2 cut(s)	691, 862
BsiSI	CCGG	2 cut(s)	397, 959
BslFI	GGGAC	1 cut(s)	682
BslI	CCNNNNNNNGG	2 cut(s)	827, 935
BsmAI	GTCTC	3 cut(s)	21, 300, 587
BsmBI	CGTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	682
BsmI	GAATGC	2 cut(s)	349, 930
BsnI	GGCC	2 cut(s)	199, 400
Bso31I	GGTCTC	1 cut(s)	587
Bsp1286I	GDGCHC	2 cut(s)	691, 862
Bsp143I	GATC	7 cut(s)	37, 154, 187, 600, 631, 842, 896
BspACI	CCGC	1 cut(s)	912
BspANI	GGCC	2 cut(s)	199, 400
BspMI	ACCTGC	1 cut(s)	724
BspPI	GGATC	4 cut(s)	149, 626, 850, 891
BspQI	GCTCTTC	1 cut(s)	679
BspTNI	GGTCTC	1 cut(s)	587
BsrFI	RCCGGY	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	396
BssMI	GATC	7 cut(s)	37, 154, 187, 600, 631, 842, 896
BssSI	CACGAG	1 cut(s)	690
Bst2BI	CACGAG	1 cut(s)	690
Bst2UI	CCWGG	1 cut(s)	80
Bst6I	CTCTTC	2 cut(s)	24, 679
BstDEI	CTNAG	2 cut(s)	453, 540
BstF5I	GGATG	1 cut(s)	217
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	7 cut(s)	40, 157, 190, 603, 634, 845, 899
BstMAI	GTCTC	3 cut(s)	21, 300, 587
BstMBI	GATC	7 cut(s)	37, 154, 187, 600, 631, 842, 896
BstNI	CCWGG	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	866
BstSCI	CCNGG	1 cut(s)	78
BstSLI	GKGCMC	1 cut(s)	862
BstV2I	GAAGAC	2 cut(s)	360, 455
BstX2I	RGATCY	3 cut(s)	631, 842, 896
BstYI	RGATCY	3 cut(s)	631, 842, 896
BsuRI	GGCC	2 cut(s)	199, 400
BtrI	CACGTC	1 cut(s)	644
BtsCI	GGATG	1 cut(s)	217
BveI	ACCTGC	1 cut(s)	724
CfoI	GCGC	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	396
Cfr13I	GGNCC	1 cut(s)	225
Csp6I	GTAC	2 cut(s)	318, 649
CspCI	CAANNNNNGTGG	2 cut(s)	46, 81
CviAII	CATG	6 cut(s)	191, 545, 604, 863, 908, 935
CviJI	RGCY	8 cut(s)	199, 367, 400, 424, 572, 689, 729, 803
CviKI_1	RGCY	8 cut(s)	199, 367, 400, 424, 572, 689, 729, 803
CviQI	GTAC	2 cut(s)	318, 649
DdeI	CTNAG	2 cut(s)	453, 540
DpnI	GATC	7 cut(s)	39, 156, 189, 602, 633, 844, 898
DpnII	GATC	7 cut(s)	37, 154, 187, 600, 631, 842, 896
Eam1104I	CTCTTC	2 cut(s)	24, 679
EarI	CTCTTC	2 cut(s)	24, 679
EciI	GGCGGA	1 cut(s)	927
Ecl136II	GAGCTC	1 cut(s)	689
Eco24I	GRGCYC	1 cut(s)	691
Eco31I	GGTCTC	1 cut(s)	587
Eco47I	GGWCC	1 cut(s)	225
Eco53kI	GAGCTC	1 cut(s)	689
Eco57I	CTGAAG	2 cut(s)	93, 512
EcoICRI	GAGCTC	1 cut(s)	689
EcoRII	CCWGG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	559
EcoT38I	GRGCYC	1 cut(s)	691
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	6 cut(s)	194, 548, 607, 866, 911, 938
FalI	AAGNNNNNCTT	2 cut(s)	91, 123
FaqI	GGGAC	1 cut(s)	682
FatI	CATG	6 cut(s)	190, 544, 603, 862, 907, 934
FblI	GTMKAC	1 cut(s)	955
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	691
FspBI	CTAG	2 cut(s)	149, 612
GlaI	GCGC	1 cut(s)	10
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	199, 400
HapII	CCGG	2 cut(s)	397, 959
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	6 cut(s)	194, 548, 607, 866, 911, 938
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	584
HindII	GTYRAC	1 cut(s)	584
HinfI	GANTC	4 cut(s)	94, 287, 620, 695
HpaII	CCGG	2 cut(s)	397, 959
HphI	GGTGA	4 cut(s)	381, 386, 705, 824
Hpy166II	GTNNAC	4 cut(s)	71, 584, 860, 956
Hpy188I	TCNGA	3 cut(s)	37, 93, 112
Hpy188III	TCNNGA	2 cut(s)	692, 846
Hpy8I	GTNNAC	4 cut(s)	71, 584, 860, 956
HpyAV	CCTTC	2 cut(s)	272, 487
HpyCH4IV	ACGT	4 cut(s)	293, 580, 586, 643
HpyCH4V	TGCA	6 cut(s)	347, 557, 719, 860, 866, 874
HpyF3I	CTNAG	2 cut(s)	453, 540
HpySE526I	ACGT	4 cut(s)	293, 580, 586, 643
Hsp92II	CATG	6 cut(s)	194, 548, 607, 866, 911, 938
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	7 cut(s)	37, 154, 187, 600, 631, 842, 896
LguI	GCTCTTC	1 cut(s)	679
LweI	GCATC	2 cut(s)	202, 566
MaeI	CTAG	2 cut(s)	149, 612
MaeII	ACGT	4 cut(s)	293, 580, 586, 643
MaeIII	GTNAC	1 cut(s)	498
MalI	GATC	7 cut(s)	39, 156, 189, 602, 633, 844, 898
MboI	GATC	7 cut(s)	37, 154, 187, 600, 631, 842, 896
MboII	GAAGA	5 cut(s)	11, 184, 365, 460, 696
MfeI	CAATTG	1 cut(s)	852
MflI	RGATCY	3 cut(s)	631, 842, 896
MhlI	GDGCHC	2 cut(s)	691, 862
MlyI	GAGTC	1 cut(s)	704
MmeI	TCCRAC	2 cut(s)	498, 504
Mph1103I	ATGCAT	1 cut(s)	559
MseI	TTAA	1 cut(s)	42
MspA1I	CMGCKG	1 cut(s)	803
MspI	CCGG	2 cut(s)	397, 959
MspR9I	CCNGG	1 cut(s)	80
MunI	CAATTG	1 cut(s)	852
Mva1269I	GAATGC	2 cut(s)	349, 930
MvaI	CCWGG	1 cut(s)	80
NdeII	GATC	7 cut(s)	37, 154, 187, 600, 631, 842, 896
NlaIII	CATG	6 cut(s)	194, 548, 607, 866, 911, 938
NsiI	ATGCAT	1 cut(s)	559
NspI	RCATGY	1 cut(s)	866
PaqCI	CACCTGC	1 cut(s)	724
PciSI	GCTCTTC	1 cut(s)	679
PctI	GAATGC	2 cut(s)	349, 930
PfeI	GAWTC	3 cut(s)	94, 287, 620
PflMI	CCANNNNNTGG	1 cut(s)	935
PleI	GAGTC	1 cut(s)	703
PpsI	GAGTC	1 cut(s)	703
Psp124BI	GAGCTC	1 cut(s)	691
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	225
PsuI	RGATCY	3 cut(s)	631, 842, 896
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	2 cut(s)	319, 650
RsaNI	GTAC	2 cut(s)	318, 649
SacI	GAGCTC	1 cut(s)	691
SapI	GCTCTTC	1 cut(s)	679
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	7 cut(s)	37, 154, 187, 600, 631, 842, 896
Sau96I	GGNCC	1 cut(s)	225
ScaI	AGTACT	1 cut(s)	650
SchI	GAGTC	1 cut(s)	704
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	2 cut(s)	691, 862
SfaNI	GCATC	2 cut(s)	202, 566
SinI	GGWCC	1 cut(s)	225
SmlI	CTYRAG	2 cut(s)	206, 271
SmoI	CTYRAG	2 cut(s)	206, 271
SpeI	ACTAGT	1 cut(s)	611
SsiI	CCGC	1 cut(s)	912
SspMI	CTAG	2 cut(s)	149, 612
SstI	GAGCTC	1 cut(s)	691
StyD4I	CCNGG	1 cut(s)	78
TaiI	ACGT	4 cut(s)	296, 583, 589, 646
TaqI	TCGA	1 cut(s)	28
TatI	WGTACW	1 cut(s)	648
TfiI	GAWTC	3 cut(s)	94, 287, 620
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TspDTI	ATGAA	4 cut(s)	300, 366, 393, 674
Van91I	CCANNNNNTGG	1 cut(s)	935
VneI	GTGCAC	1 cut(s)	858
VpaK11BI	GGWCC	1 cut(s)	225
XapI	RAATTY	2 cut(s)	59, 816
XceI	RCATGY	1 cut(s)	866
XmiI	GTMKAC	1 cut(s)	955
XspI	CTAG	2 cut(s)	149, 612
ZrmI	AGTACT	1 cut(s)	650
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.