RLG00000036706

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003288
Physical Location & Seq
Reverse (-)
83656116 .. 83659313
3198 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036706

Sequence Viewer

Length: 1320 bp
ATGAGTAATTCCCAAATATCATCATCCTCTTTGTCTTCAAACGGAACCGATGATTATTATTATCGGGTCATGGCTTCATTTGATGAGGAGCAAGATTTATTGCTTCGCATGTACGCGAATAATAATCACCTCTTGGCAGAGTTGGATGACAATGGGGACGACGAGGCTGAATCGAGGCGTAGAGGAGCAGTTCCTGGCCATATAGTTATTAATCGTCCTCGACAAGAAGCTGGATATAATCTATACATGGACTACTTTGCTGAGGATTCTATCGAAGGTGTTAATCAAAAGAAAGATAAAGTATGGGAAAGAACAACTGATTTGTGGAATAAGGATAAGGATGGACACCAGATGCGAAGCGCCAAGTCTCTTCAAAGTCGATTTTCTGATCTTAACTATTGCGTAAGCAAATTTGGTGGTTCACTTCGCCAGGTGGAAAATCGAAATCAAAGTGGTTCTTCAGAGAAAGATATTTATGCCCAGGCAAAACAACATCTACTAGATGATCCTAACTATATAAAGAAGAAGCTTCAATTTGATCATGTGTGGCCTATTCTCAAGGATGCTGAAAAATGGACCGATAATGGTAGAAGTTCAACTAAACCACGACAAAAAAATTACTCAAGTGAAGGATATGAATCAACGTCTCGCACATCACAATCGTTAGGTACATTACCATTTGATGTCGATTTGAATGCAGATGAAGACGAACAAGAGCTGTTTAGTGATGAACTTGCCTCACCTCATCGGCCTATTGGTGTAAAGAAAGCAAAGCTGAAAAGGAAAGAGTTGGATGAGAAGACTAAGATTGCTCAACAAGTGAAAGAATCCAACCAAGAACTGAAAGAGTTACTTGAAAAAAGCCTGTTGGAGAGAAATGCTTTTTCCTCTAAGCATGAGGAATACGCATCTCAAAAATTAGCTATTCAACGTCAACGTGAGGAGAGCAAGATCATGCTTACTAGTTTGGATTCAATTACAGATCCAGAAGAATGTGAGTACTTACGAATGAAAAAAACTGAAATAATGGAGAGAAGAGCTCGTGAGTCCCGTCTACAACAATCACCTGCAACATTTGGCTATGGTAATTTTGGATATGGACAACACTATGGAGGAGGAAGTGGTGGATATGGACAACATTATGGAGGAACAACTGGATATGGTGAAATTCCTCATTATGGAGGAAGTGGTGGATCTGGAACAAGTGGTGCACATGCAGGAGTGCAGCAATTCGGTGGTAGCAATGGATCCAATACACATGGTGGATATGGAGGAATGCCAGAACATGGAGGAAGTAATGATAGTCTGCCGGAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

440

Amino Acids

49.35

Weight (kDa)

5.64

Isoelectric Point (pI)

57.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 175 - 342 3.1e-16 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1075
Acc36I ACCTGC 1 cut(s) 1075
AccB7I CCANNNNNTGG 1 cut(s) 1286
AccI GTMKAC 1 cut(s) 1054
AccII CGCG 1 cut(s) 116
AclWI GGATC 5 cut(s) 500, 977, 1201, 1242, 1255
AcoI YGGCCR 1 cut(s) 196
AcsI RAATTY 2 cut(s) 410, 1167
AcuI CTGAAG 1 cut(s) 444
AdeI CACNNNGTG 1 cut(s) 1262
AfaI GTAC 3 cut(s) 113, 670, 1001
AfiI CCNNNNNNNGG 2 cut(s) 1178, 1286
AgsI TTSAA 8 cut(s) 39, 374, 533, 597, 694, 857, 929, 975
AhlI ACTAGT 1 cut(s) 962
AjnI CCWGG 3 cut(s) 193, 429, 480
AluBI AGCT 6 cut(s) 230, 529, 718, 775, 923, 1040
AluI AGCT 6 cut(s) 230, 529, 718, 775, 923, 1040
Alw21I GWGCWC 2 cut(s) 1042, 1213
Alw26I GTCTC 2 cut(s) 372, 651
Alw44I GTGCAC 1 cut(s) 1209
AlwI GGATC 5 cut(s) 500, 977, 1201, 1242, 1255
AlwNI CAGNNNCTG 1 cut(s) 194
AoxI GGCC 3 cut(s) 196, 548, 749
ApaLI GTGCAC 1 cut(s) 1209
ApeKI GCWGC 1 cut(s) 1225
ApoI RAATTY 2 cut(s) 410, 1167
AseI ATTAAT 1 cut(s) 210
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 1 cut(s) 576
AsuHPI GGTGA 4 cut(s) 119, 732, 1056, 1175
AvaII GGWCC 1 cut(s) 576
BaeGI GKGCMC 1 cut(s) 1213
BalI TGGCCA 1 cut(s) 198
BamHI GGATCC 1 cut(s) 1247
BanII GRGCYC 1 cut(s) 1042
BauI CACGAG 1 cut(s) 1041
BbsI GAAGAC 3 cut(s) 27, 711, 806
Bbv12I GWGCWC 2 cut(s) 1042, 1213
BbvCI CCTCAGC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 1237
BccI CCATC 1 cut(s) 335
BcgI CGANNNNNNTGC 2 cut(s) 677, 711
BciT130I CCWGG 3 cut(s) 195, 431, 482
BclI TGATCA 1 cut(s) 538
BcoDI GTCTC 2 cut(s) 372, 651
BcuI ACTAGT 1 cut(s) 962
BfaI CTAG 2 cut(s) 500, 963
BfoI RGCGCY 1 cut(s) 363
BfuAI ACCTGC 1 cut(s) 1075
BisI GCNGC 1 cut(s) 1226
BlsI GCNGC 1 cut(s) 1227
BmcAI AGTACT 1 cut(s) 1001
Bme1390I CCNGG 3 cut(s) 195, 431, 482
Bme18I GGWCC 1 cut(s) 576
BmgT120I GGNCC 1 cut(s) 576
BmiI GGNNCC 2 cut(s) 46, 1249
BmrFI CCNGG 3 cut(s) 195, 431, 482
BmsI GCATC 3 cut(s) 342, 553, 917
BpiI GAAGAC 3 cut(s) 27, 711, 806
BplI GAGNNNNNCTC 2 cut(s) 1024, 1056
Bpu10I CCTNAGC 1 cut(s) 261
BpuEI CTTGAG 2 cut(s) 542, 607
BsaBI GATNNNNATC 1 cut(s) 637
BsaJI CCNNGG 1 cut(s) 480
Bsc4I CCNNNNNNNGG 2 cut(s) 1178, 1286
Bse1I ACTGG 1 cut(s) 1159
Bse3DI GCAATG 1 cut(s) 1249
Bse8I GATNNNNATC 1 cut(s) 637
BseBI CCWGG 3 cut(s) 195, 431, 482
BseDI CCNNGG 1 cut(s) 480
BseGI GGATG 5 cut(s) 23, 151, 346, 568, 799
BseJI GATNNNNATC 1 cut(s) 637
BseLI CCNNNNNNNGG 2 cut(s) 1178, 1286
BseMI GCAATG 1 cut(s) 1249
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 1159
BseRI GAGGAG 4 cut(s) 101, 198, 956, 1128
BseSI GKGCMC 1 cut(s) 1213
BseXI GCAGC 1 cut(s) 1237
BsgI GTGCAG 1 cut(s) 1244
Bsh1236I CGCG 1 cut(s) 116
BshFI GGCC 3 cut(s) 198, 550, 751
BsiHKAI GWGCWC 2 cut(s) 1042, 1213
BsiSI CCGG 1 cut(s) 1310
BslFI GGGAC 2 cut(s) 170, 1033
BslI CCNNNNNNNGG 2 cut(s) 1178, 1286
BsmAI GTCTC 2 cut(s) 372, 651
BsmBI CGTCTC 1 cut(s) 651
BsmFI GGGAC 2 cut(s) 170, 1033
BsmI GAATGC 2 cut(s) 700, 1281
BsnI GGCC 3 cut(s) 198, 550, 751
Bsp1286I GDGCHC 2 cut(s) 1042, 1213
Bsp143I GATC 7 cut(s) 388, 505, 538, 951, 982, 1193, 1247
BspANI GGCC 3 cut(s) 198, 550, 751
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 2 cut(s) 46, 1249
BspMI ACCTGC 1 cut(s) 1075
BspPI GGATC 5 cut(s) 500, 977, 1201, 1242, 1255
BspQI GCTCTTC 1 cut(s) 1030
BsrDI GCAATG 1 cut(s) 1249
BsrI ACTGG 1 cut(s) 1159
BssECI CCNNGG 1 cut(s) 480
BssMI GATC 7 cut(s) 388, 505, 538, 951, 982, 1193, 1247
BssSI CACGAG 1 cut(s) 1041
Bst2BI CACGAG 1 cut(s) 1041
Bst2UI CCWGG 3 cut(s) 195, 431, 482
Bst6I CTCTTC 2 cut(s) 375, 1030
BstDEI CTNAG 3 cut(s) 261, 804, 891
BstF5I GGATG 5 cut(s) 23, 151, 346, 568, 799
BstFNI CGCG 1 cut(s) 116
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 7 cut(s) 391, 508, 541, 954, 985, 1196, 1250
BstMAI GTCTC 2 cut(s) 372, 651
BstMBI GATC 7 cut(s) 388, 505, 538, 951, 982, 1193, 1247
BstNI CCWGG 3 cut(s) 195, 431, 482
BstNSI RCATGY 2 cut(s) 112, 1217
BstSCI CCNGG 3 cut(s) 193, 429, 480
BstSLI GKGCMC 1 cut(s) 1213
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 1237
BstV2I GAAGAC 3 cut(s) 27, 711, 806
BstX2I RGATCY 3 cut(s) 982, 1193, 1247
BstYI RGATCY 3 cut(s) 982, 1193, 1247
BsuRI GGCC 3 cut(s) 198, 550, 751
BtsCI GGATG 5 cut(s) 23, 151, 346, 568, 799
BveI ACCTGC 1 cut(s) 1075
CaiI CAGNNNCTG 1 cut(s) 194
CfoI GCGC 1 cut(s) 362
Cfr13I GGNCC 1 cut(s) 576
Csp6I GTAC 3 cut(s) 112, 669, 1000
CspCI CAANNNNNGTGG 2 cut(s) 397, 432
CviAII CATG 9 cut(s) 70, 109, 247, 542, 896, 955, 1214, 1259, 1286
CviQI GTAC 3 cut(s) 112, 669, 1000
DdeI CTNAG 3 cut(s) 261, 804, 891
DpnI GATC 7 cut(s) 390, 507, 540, 953, 984, 1195, 1249
DpnII GATC 7 cut(s) 388, 505, 538, 951, 982, 1193, 1247
DraIII CACNNNGTG 1 cut(s) 1262
EaeI YGGCCR 1 cut(s) 196
Eam1104I CTCTTC 2 cut(s) 375, 1030
EarI CTCTTC 2 cut(s) 375, 1030
Ecl136II GAGCTC 1 cut(s) 1040
Eco24I GRGCYC 1 cut(s) 1042
Eco47I GGWCC 1 cut(s) 576
Eco53kI GAGCTC 1 cut(s) 1040
Eco57I CTGAAG 1 cut(s) 444
EcoICRI GAGCTC 1 cut(s) 1040
EcoRII CCWGG 3 cut(s) 193, 429, 480
EcoT38I GRGCYC 1 cut(s) 1042
Esp3I CGTCTC 1 cut(s) 651
FaeI CATG 9 cut(s) 73, 112, 250, 545, 899, 958, 1217, 1262, 1289
FalI AAGNNNNNCTT 4 cut(s) 442, 474, 837, 869
FaqI GGGAC 2 cut(s) 170, 1033
FatI CATG 9 cut(s) 69, 108, 246, 541, 895, 954, 1213, 1258, 1285
FbaI TGATCA 1 cut(s) 538
FblI GTMKAC 1 cut(s) 1054
Fnu4HI GCNGC 1 cut(s) 1226
FokI GGATG 5 cut(s) 10, 158, 353, 575, 806
FriOI GRGCYC 1 cut(s) 1042
Fsp4HI GCNGC 1 cut(s) 1226
FspBI CTAG 2 cut(s) 500, 963
GlaI GCGC 1 cut(s) 361
GluI GCNGC 1 cut(s) 1226
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 3 cut(s) 198, 550, 751
HapII CCGG 1 cut(s) 1310
HhaI GCGC 1 cut(s) 362
Hin1II CATG 9 cut(s) 73, 112, 250, 545, 899, 958, 1217, 1262, 1289
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HincII GTYRAC 1 cut(s) 935
HindII GTYRAC 1 cut(s) 935
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 6 cut(s) 170, 266, 638, 827, 971, 1046
HpaII CCGG 1 cut(s) 1310
HphI GGTGA 4 cut(s) 119, 732, 1056, 1175
Hpy166II GTNNAC 4 cut(s) 422, 935, 1055, 1211
Hpy188I TCNGA 2 cut(s) 388, 463
Hpy188III TCNNGA 3 cut(s) 986, 1043, 1197
Hpy8I GTNNAC 4 cut(s) 422, 935, 1055, 1211
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 269, 623
HpyCH4IV ACGT 3 cut(s) 644, 931, 937
HpyCH4V TGCA 5 cut(s) 698, 1070, 1211, 1217, 1225
HpyF3I CTNAG 3 cut(s) 261, 804, 891
HpySE526I ACGT 3 cut(s) 644, 931, 937
Hsp92II CATG 9 cut(s) 73, 112, 250, 545, 899, 958, 1217, 1262, 1289
HspAI GCGC 1 cut(s) 360
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 7 cut(s) 388, 505, 538, 951, 982, 1193, 1247
LguI GCTCTTC 1 cut(s) 1030
LmnI GCTCC 2 cut(s) 88, 185
Lsp1109I GCAGC 1 cut(s) 1237
LweI GCATC 3 cut(s) 342, 553, 917
MaeI CTAG 2 cut(s) 500, 963
MaeII ACGT 3 cut(s) 644, 931, 937
MaeIII GTNAC 1 cut(s) 849
MalI GATC 7 cut(s) 390, 507, 540, 953, 984, 1195, 1249
MboI GATC 7 cut(s) 388, 505, 538, 951, 982, 1193, 1247
MboII GAAGA 8 cut(s) 27, 362, 450, 535, 716, 811, 1001, 1047
MflI RGATCY 3 cut(s) 982, 1193, 1247
MhlI GDGCHC 2 cut(s) 1042, 1213
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 9 cut(s) 7, 410, 533, 616, 917, 975, 1087, 1167, 1229
MluNI TGGCCA 1 cut(s) 198
MlyI GAGTC 1 cut(s) 1055
MmeI TCCRAC 4 cut(s) 123, 771, 849, 855
Mox20I TGGCCA 1 cut(s) 198
MscI TGGCCA 1 cut(s) 198
MseI TTAA 3 cut(s) 210, 282, 393
Msp20I TGGCCA 1 cut(s) 198
MspI CCGG 1 cut(s) 1310
MspR9I CCNGG 3 cut(s) 195, 431, 482
Mva1269I GAATGC 2 cut(s) 700, 1281
MvaI CCWGG 3 cut(s) 195, 431, 482
MvnI CGCG 1 cut(s) 116
NdeII GATC 7 cut(s) 388, 505, 538, 951, 982, 1193, 1247
NlaIII CATG 9 cut(s) 73, 112, 250, 545, 899, 958, 1217, 1262, 1289
NlaIV GGNNCC 2 cut(s) 46, 1249
NspI RCATGY 2 cut(s) 112, 1217
PaqCI CACCTGC 1 cut(s) 1075
PciSI GCTCTTC 1 cut(s) 1030
PcsI WCGNNNNNNNCGW 1 cut(s) 1048
PctI GAATGC 2 cut(s) 700, 1281
PfeI GAWTC 5 cut(s) 170, 266, 638, 827, 971
PflMI CCANNNNNTGG 1 cut(s) 1286
PkrI GCNGC 1 cut(s) 1227
PleI GAGTC 1 cut(s) 1054
PpsI GAGTC 1 cut(s) 1054
PshBI ATTAAT 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 1042
Psp6I CCWGG 3 cut(s) 193, 429, 480
PspGI CCWGG 3 cut(s) 193, 429, 480
PspN4I GGNNCC 2 cut(s) 46, 1249
PspPI GGNCC 1 cut(s) 576
PstNI CAGNNNCTG 1 cut(s) 194
PsuI RGATCY 3 cut(s) 982, 1193, 1247
RsaI GTAC 3 cut(s) 113, 670, 1001
RsaNI GTAC 3 cut(s) 112, 669, 1000
SacI GAGCTC 1 cut(s) 1042
SapI GCTCTTC 1 cut(s) 1030
SaqAI TTAA 3 cut(s) 210, 282, 393
SatI GCNGC 1 cut(s) 1226
Sau3AI GATC 7 cut(s) 388, 505, 538, 951, 982, 1193, 1247
Sau96I GGNCC 1 cut(s) 576
ScaI AGTACT 1 cut(s) 1001
SchI GAGTC 1 cut(s) 1055
ScrFI CCNGG 3 cut(s) 195, 431, 482
SduI GDGCHC 2 cut(s) 1042, 1213
SfaNI GCATC 3 cut(s) 342, 553, 917
SinI GGWCC 1 cut(s) 576
SmlI CTYRAG 2 cut(s) 557, 622
SmoI CTYRAG 2 cut(s) 557, 622
SpeI ACTAGT 1 cut(s) 962
Sse9I AATT 9 cut(s) 7, 410, 533, 616, 917, 975, 1087, 1167, 1229
SspMI CTAG 2 cut(s) 500, 963
SstI GAGCTC 1 cut(s) 1042
StyD4I CCNGG 3 cut(s) 193, 429, 480
TaiI ACGT 3 cut(s) 647, 934, 940
TaqI TCGA 6 cut(s) 173, 220, 273, 379, 442, 687
TaqII GACCGA 1 cut(s) 593
TasI AATT 9 cut(s) 7, 410, 533, 616, 917, 975, 1087, 1167, 1229
TatI WGTACW 1 cut(s) 999
TfiI GAWTC 5 cut(s) 170, 266, 638, 827, 971
Tru1I TTAA 3 cut(s) 210, 282, 393
Tru9I TTAA 3 cut(s) 210, 282, 393
TseI GCWGC 1 cut(s) 1225
TspDTI ATGAA 5 cut(s) 66, 651, 717, 744, 1025
TspGWI ACGGA 1 cut(s) 57
Van91I CCANNNNNTGG 1 cut(s) 1286
VneI GTGCAC 1 cut(s) 1209
VpaK11BI GGWCC 1 cut(s) 576
VspI ATTAAT 1 cut(s) 210
XapI RAATTY 2 cut(s) 410, 1167
XceI RCATGY 2 cut(s) 112, 1217
XmiI GTMKAC 1 cut(s) 1054
XspI CTAG 2 cut(s) 500, 963
ZrmI AGTACT 1 cut(s) 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.