RLG00000013767

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003288
Physical Location & Seq
Forward (+)
40550173 .. 40552889
2717 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013767

Sequence Viewer

Length: 900 bp
ATGAATAATTCTCAAATATCATCATCATCTTTGTCTTCAAACGGAACCGATGATTATTATTATCGGGTCATGTCTTCATTTGATGAGGACAAAGATTTATTGCTTCGCATGTATGAGAATAATAATCACCTCTTGGCGGAGTTGGATGACAATGAGGACGACGAGGCTGAATCGAGGCGTAGAGGAGCAGTTCCTAGCCATATAGTTATTAATCGTCCTCGGCAAAAAGCTGCATATAATCTATACATGGACTACTTTGCTGAGGATTCTATCGAAGGTGTTAATCAAAAGAAAGATAAAGTATGGGAAAGGATAACTGATTTGTGGAATAAGGATAAGGATGAACACCATATGCGAAGCGCCAAGTCTCTTCAAAGTCGATTTTCTGATCTTAACTATTGCGTAAGCAAATTTCATGGTTCACTTCGCCAGGTGGAAAATCGAAATCAAAGTGGTGCTTTAGAGAAAGATATTGCAAAACAACATCTACTAGATGATCCTAACTATATAAAGAAGAAGCTTCAATTTGATCATGTGTGGCCTATTTGCAAGGATGCTGAAAAATGGACCGATAATGATAAAGATGAACAAGAGCTGTTTAGTGATGAACTTGCCTTACCTCATCGGCCTATTGGTGTAAAGAAAGCAAACATGAAAAGGAAAGAGTTGAATAAGAAGACCAAGATTGCTCAACAAGTGAAAGAATCCAACCAAGAACTGAAGGAGTTACTTGAAAAAAGCTTGAGAGAGAGAAATGCTTTTTCCGCTAAGCATAAGGAATATGCATCTCAAAAGTTAGCTATTCAACGTCAACGTGAGGAGAGCAAAATCATGCTTACTAGTTTGGATTCAATTACAGATCTAGAAGGACGTGAGTACCTACGAATGAAAAAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

300

Amino Acids

35.19

Weight (kDa)

6.78

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 206 - 299 1.8e-06 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 137, 765
AclWI GGATC 1 cut(s) 491
AcsI RAATTY 1 cut(s) 410
AcuI CTGAAG 1 cut(s) 740
AfaI GTAC 1 cut(s) 878
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 7 cut(s) 39, 374, 524, 670, 734, 806, 852
AhlI ACTAGT 1 cut(s) 839
AjiI CACGTC 1 cut(s) 872
AjnI CCWGG 1 cut(s) 429
AluBI AGCT 6 cut(s) 230, 520, 595, 741, 800, 896
AluI AGCT 6 cut(s) 230, 520, 595, 741, 800, 896
Alw26I GTCTC 1 cut(s) 372
AlwI GGATC 1 cut(s) 491
AoxI GGCC 2 cut(s) 539, 626
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 410
AseI ATTAAT 1 cut(s) 210
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 1 cut(s) 567
AsuHPI GGTGA 1 cut(s) 119
AvaII GGWCC 1 cut(s) 567
BaeI ACNNNNGTAYC 2 cut(s) 860, 893
BbsI GAAGAC 3 cut(s) 27, 66, 683
BbvCI CCTCAGC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 217
BciT130I CCWGG 1 cut(s) 431
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 372
BcuI ACTAGT 1 cut(s) 839
BfaI CTAG 4 cut(s) 195, 491, 840, 863
BfoI RGCGCY 1 cut(s) 363
BglII AGATCT 1 cut(s) 859
BisI GCNGC 1 cut(s) 231
BlpI GCTNAGC 1 cut(s) 768
BlsI GCNGC 1 cut(s) 232
Bme1390I CCNGG 1 cut(s) 431
Bme18I GGWCC 1 cut(s) 567
BmgBI CACGTC 1 cut(s) 872
BmgT120I GGNCC 1 cut(s) 567
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 431
BmsI GCATC 2 cut(s) 544, 794
BpiI GAAGAC 3 cut(s) 27, 66, 683
Bpu10I CCTNAGC 1 cut(s) 261
Bpu1102I GCTNAGC 1 cut(s) 768
BpuEI CTTGAG 1 cut(s) 763
BsaJI CCNNGG 1 cut(s) 218
Bsc4I CCNNNNNNNGG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 431
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 3 cut(s) 151, 346, 559
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 252
BseRI GAGGAG 2 cut(s) 198, 833
BseXI GCAGC 1 cut(s) 217
BshFI GGCC 2 cut(s) 541, 628
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 372
BsnI GGCC 2 cut(s) 541, 628
Bsp143I GATC 4 cut(s) 388, 496, 529, 859
Bsp1720I GCTNAGC 1 cut(s) 768
BspACI CCGC 2 cut(s) 137, 765
BspANI GGCC 2 cut(s) 541, 628
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 46
BspPI GGATC 1 cut(s) 491
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 4 cut(s) 388, 496, 529, 859
Bst2UI CCWGG 1 cut(s) 431
Bst6I CTCTTC 1 cut(s) 375
BstDEI CTNAG 2 cut(s) 261, 768
BstF5I GGATG 3 cut(s) 151, 346, 559
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 4 cut(s) 391, 499, 532, 862
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 4 cut(s) 388, 496, 529, 859
BstMWI GCNNNNNNNGC 1 cut(s) 764
BstNI CCWGG 1 cut(s) 431
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 429
BstV1I GCAGC 1 cut(s) 217
BstV2I GAAGAC 3 cut(s) 27, 66, 683
BstX2I RGATCY 1 cut(s) 859
BstYI RGATCY 1 cut(s) 859
BsuRI GGCC 2 cut(s) 541, 628
BtrI CACGTC 1 cut(s) 872
BtsCI GGATG 3 cut(s) 151, 346, 559
CfoI GCGC 1 cut(s) 362
Cfr13I GGNCC 1 cut(s) 567
Csp6I GTAC 1 cut(s) 877
CviAII CATG 7 cut(s) 70, 109, 247, 416, 533, 652, 832
CviQI GTAC 1 cut(s) 877
DdeI CTNAG 2 cut(s) 261, 768
DpnI GATC 4 cut(s) 390, 498, 531, 861
DpnII GATC 4 cut(s) 388, 496, 529, 859
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
EciI GGCGGA 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 567
Eco57I CTGAAG 1 cut(s) 740
EcoRII CCWGG 1 cut(s) 429
EcoT22I ATGCAT 1 cut(s) 787
FaeI CATG 7 cut(s) 73, 112, 250, 419, 536, 655, 835
FalI AAGNNNNNCTT 2 cut(s) 442, 474
FatI CATG 7 cut(s) 69, 108, 246, 415, 532, 651, 831
FauNDI CATATG 1 cut(s) 351
FbaI TGATCA 1 cut(s) 529
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 3 cut(s) 158, 353, 566
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 4 cut(s) 195, 491, 840, 863
GlaI GCGC 1 cut(s) 361
GluI GCNGC 1 cut(s) 231
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 2 cut(s) 541, 628
HhaI GCGC 1 cut(s) 362
Hin1II CATG 7 cut(s) 73, 112, 250, 419, 536, 655, 835
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HincII GTYRAC 1 cut(s) 812
HindII GTYRAC 1 cut(s) 812
HindIII AAGCTT 3 cut(s) 518, 739, 894
HinfI GANTC 4 cut(s) 170, 266, 704, 848
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 422, 812
Hpy188I TCNGA 1 cut(s) 388
Hpy188III TCNNGA 1 cut(s) 863
Hpy8I GTNNAC 2 cut(s) 422, 812
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 3 cut(s) 269, 715, 860
HpyCH4IV ACGT 3 cut(s) 808, 814, 871
HpyCH4V TGCA 4 cut(s) 233, 476, 549, 785
HpyF10VI GCNNNNNNNGC 1 cut(s) 764
HpyF3I CTNAG 2 cut(s) 261, 768
HpySE526I ACGT 3 cut(s) 808, 814, 871
Hsp92II CATG 7 cut(s) 73, 112, 250, 419, 536, 655, 835
HspAI GCGC 1 cut(s) 360
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 4 cut(s) 388, 496, 529, 859
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 2 cut(s) 416, 443
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 2 cut(s) 544, 794
MaeI CTAG 4 cut(s) 195, 491, 840, 863
MaeII ACGT 3 cut(s) 808, 814, 871
MaeIII GTNAC 1 cut(s) 726
MalI GATC 4 cut(s) 390, 498, 531, 861
MboI GATC 4 cut(s) 388, 496, 529, 859
MboII GAAGA 5 cut(s) 27, 66, 362, 526, 688
MflI RGATCY 1 cut(s) 859
MluCI AATT 4 cut(s) 7, 410, 524, 852
MmeI TCCRAC 2 cut(s) 123, 732
Mph1103I ATGCAT 1 cut(s) 787
MseI TTAA 4 cut(s) 210, 282, 393, 898
MspR9I CCNGG 1 cut(s) 431
MvaI CCWGG 1 cut(s) 431
MwoI GCNNNNNNNGC 1 cut(s) 764
NdeI CATATG 1 cut(s) 351
NdeII GATC 4 cut(s) 388, 496, 529, 859
NlaIII CATG 7 cut(s) 73, 112, 250, 419, 536, 655, 835
NlaIV GGNNCC 1 cut(s) 46
NmeAIII GCCGAG 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 787
NspI RCATGY 1 cut(s) 112
PfeI GAWTC 4 cut(s) 170, 266, 704, 848
PkrI GCNGC 1 cut(s) 232
PshBI ATTAAT 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 429
PspGI CCWGG 1 cut(s) 429
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 567
PsrI GAACNNNNNNTAC 2 cut(s) 600, 632
PsuI RGATCY 1 cut(s) 859
RsaI GTAC 1 cut(s) 878
RsaNI GTAC 1 cut(s) 877
SaqAI TTAA 4 cut(s) 210, 282, 393, 898
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 4 cut(s) 388, 496, 529, 859
Sau96I GGNCC 1 cut(s) 567
ScrFI CCNGG 1 cut(s) 431
SfaNI GCATC 2 cut(s) 544, 794
SinI GGWCC 1 cut(s) 567
SmlI CTYRAG 1 cut(s) 742
SmoI CTYRAG 1 cut(s) 742
SpeI ACTAGT 1 cut(s) 839
Sse9I AATT 4 cut(s) 7, 410, 524, 852
SsiI CCGC 2 cut(s) 137, 765
SspMI CTAG 4 cut(s) 195, 491, 840, 863
StyD4I CCNGG 1 cut(s) 429
TaiI ACGT 3 cut(s) 811, 817, 874
TaqI TCGA 4 cut(s) 173, 273, 379, 442
TaqII GACCGA 1 cut(s) 584
TasI AATT 4 cut(s) 7, 410, 524, 852
TfiI GAWTC 4 cut(s) 170, 266, 704, 848
Tru1I TTAA 4 cut(s) 210, 282, 393, 898
Tru9I TTAA 4 cut(s) 210, 282, 393, 898
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 7 cut(s) 17, 66, 357, 404, 600, 621, 668
TspGWI ACGGA 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 567
VspI ATTAAT 1 cut(s) 210
XapI RAATTY 1 cut(s) 410
XbaI TCTAGA 1 cut(s) 862
XceI RCATGY 1 cut(s) 112
XspI CTAG 4 cut(s) 195, 491, 840, 863
Zsp2I ATGCAT 1 cut(s) 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.