Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003288

Physical Location & Seq

Genomic Coordinates Forward (+)

41485372 .. 41486595

Gene Structure 1224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G029740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCAGATGTTAGGCATAAGAAAGTTGTCCATCGAAAAGGAAATTTTACTATCCAAGAAGATCAACTCTTGTGTCATTTATATCTTTCAATTTCTCAAGATTCTATCGAAGGTGTTAATCAAAAGAAAGATAAAGTATGGGAAAGAATAACTGATTTGTGGAATAAGGATAATGATGAACACCAGATGCGAAGCGCCAAGTCTCTTCAAAGTCGATTTTCTGATCTTAACTATTGCGTAAACAAATTTCGTGGTTCACTTCGCCAGGTGGAAAATCAGAATCAAAGTGGTGCTTCAGAGAAAGATATTTATGCCCAGGCAAAACAACATCTACTAGATGATCCTAACTATACAAAGAAGAAGCTTGAATTTGATCATGTTGAAGGATATGAATCAACGTCTCACACATCACAATCGTCAGGTACATTACCATTTGATGTCGATTTGAATGCAGATGAAGACGAACAAGAGCTGTTTAGTGATGAACTTGCCTCACCTCATTGGCCTATTGGTAGAAATGCTTTTTCCTCTAAGCATGAGGAATATGCATCTAAAAAATTAGCTATTCAACGTCAACGTGAGGAGAGCAAGATCATGCTTACTAGTTTGGATTCAAGTGAGTACTTACGAATGAAAAAAACTGAAATAATGGAGAGAAGAGCTAGTGAGTCCCAACTACAACAATCACCTGCAACATTTGGCTATGGTAATTTTGGATATGGACAACACTATGGAGGAGGAAGTGGTGGATATGGACAACATTATGGAGGAGCAGCTGGATATGGTGAAATTCCTCATTATGGAGGAAGTGGTGGATCTGGAATAAGTGGTGCACATGCAGGAGTGCAGCAATTCGGTGGTAGCAGTGGATCCAATACACATGGTGGATATGGAGGAATGCCAGAACATAGAGGAAGTAATGATAGTCTACCGGAATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

313

Amino Acids

34.89

Weight (kDa)

5.92

Isoelectric Point (pI)

54.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52970 AT5G52970
fragaria_vesca	FvH4_6g16320
malus_domestica	MD12G1113500.v1.1
prunus_persica	Prupe.6G232400_v2.0.a1 Prupe.6G232400_v2.0.a1
pyrus_communis	pycom12g11240
rosa_chinensis	RchiOBHm_Chr3g0470171 RchiOBHm_Chr6g0296991
rosa_laevigata	RLG00000002142 RLG00000013529 RLG00000013767 RLG00000014335 RLG00000018311 RLG00000023700 RLG00000024291 RLG00000036706
rosa_multiflora	Rmu_sc0001548.1_g000020 Rmu_sc0005600.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032810 Rroxscaffold_6G00411090 Rroxscaffold_6G00411120
rosa_rugosa	Rorug03G0107500 Rorug07G0274800
rosa_samantha	Rh2CG519300 Rh3AG156600 Rh3BG180700 Rh3CG171500 Rh3DG194200
rosa_wichuraiana	Rw0G005420 Rw0G008560 Rw3G014850 Rw3G014880 Rw4G006390 Rw6G009380 Rw7G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	697
Acc36I	ACCTGC	1 cut(s)	697
AccI	GTMKAC	1 cut(s)	928
AclWI	GGATC	4 cut(s)	335, 823, 864, 877
AcsI	RAATTY	4 cut(s)	43, 245, 368, 789
AcuI	CTGAAG	1 cut(s)	279
AdeI	CACNNNGTG	1 cut(s)	884
AfaI	GTAC	2 cut(s)	424, 623
AfiI	CCNNNNNNNGG	1 cut(s)	800
AgsI	TTSAA	7 cut(s)	90, 209, 368, 383, 448, 569, 615
AhlI	ACTAGT	1 cut(s)	602
AjnI	CCWGG	2 cut(s)	264, 315
AluBI	AGCT	5 cut(s)	364, 472, 563, 662, 776
AluI	AGCT	5 cut(s)	364, 472, 563, 662, 776
Alw21I	GWGCWC	1 cut(s)	835
Alw26I	GTCTC	2 cut(s)	207, 405
Alw44I	GTGCAC	1 cut(s)	831
AlwI	GGATC	4 cut(s)	335, 823, 864, 877
AoxI	GGCC	1 cut(s)	503
ApaLI	GTGCAC	1 cut(s)	831
ApeKI	GCWGC	2 cut(s)	773, 847
ApoI	RAATTY	4 cut(s)	43, 245, 368, 789
AspLEI	GCGC	1 cut(s)	197
AsuHPI	GGTGA	3 cut(s)	486, 678, 797
BaeGI	GKGCMC	1 cut(s)	835
BamHI	GGATCC	1 cut(s)	869
BbsI	GAAGAC	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	835
BbvI	GCAGC	2 cut(s)	785, 859
BccI	CCATC	1 cut(s)	39
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BciT130I	CCWGG	2 cut(s)	266, 317
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	2 cut(s)	207, 405
BcuI	ACTAGT	1 cut(s)	602
BfaI	CTAG	3 cut(s)	335, 603, 663
BfoI	RGCGCY	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	697
BisI	GCNGC	2 cut(s)	774, 848
BlsI	GCNGC	2 cut(s)	775, 849
BmcAI	AGTACT	1 cut(s)	623
Bme1390I	CCNGG	2 cut(s)	266, 317
BmiI	GGNNCC	1 cut(s)	871
BmrFI	CCNGG	2 cut(s)	266, 317
BmsI	GCATC	2 cut(s)	177, 557
BpiI	GAAGAC	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	391
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	931
Bsc4I	CCNNNNNNNGG	1 cut(s)	800
Bse8I	GATNNNNATC	1 cut(s)	391
BseBI	CCWGG	2 cut(s)	266, 317
BseDI	CCNNGG	1 cut(s)	315
BseJI	GATNNNNATC	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	800
BseRI	GAGGAG	3 cut(s)	596, 750, 783
BseSI	GKGCMC	1 cut(s)	835
BseXI	GCAGC	2 cut(s)	785, 859
BsgI	GTGCAG	1 cut(s)	866
BshFI	GGCC	1 cut(s)	505
BsiHKAI	GWGCWC	1 cut(s)	835
BsiSI	CCGG	1 cut(s)	932
BslFI	GGGAC	1 cut(s)	655
BslI	CCNNNNNNNGG	1 cut(s)	800
BsmAI	GTCTC	2 cut(s)	207, 405
BsmBI	CGTCTC	1 cut(s)	405
BsmFI	GGGAC	1 cut(s)	655
BsmI	GAATGC	2 cut(s)	454, 903
BsnI	GGCC	1 cut(s)	505
Bsp1286I	GDGCHC	1 cut(s)	835
Bsp143I	GATC	7 cut(s)	61, 223, 340, 373, 591, 815, 869
BspANI	GGCC	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	871
BspMI	ACCTGC	1 cut(s)	697
BspPI	GGATC	4 cut(s)	335, 823, 864, 877
BspQI	GCTCTTC	1 cut(s)	652
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	7 cut(s)	61, 223, 340, 373, 591, 815, 869
Bst2UI	CCWGG	2 cut(s)	266, 317
Bst6I	CTCTTC	2 cut(s)	210, 652
BstDEI	CTNAG	1 cut(s)	531
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	7 cut(s)	64, 226, 343, 376, 594, 818, 872
BstMAI	GTCTC	2 cut(s)	207, 405
BstMBI	GATC	7 cut(s)	61, 223, 340, 373, 591, 815, 869
BstNI	CCWGG	2 cut(s)	266, 317
BstNSI	RCATGY	1 cut(s)	839
BstSCI	CCNGG	2 cut(s)	264, 315
BstSLI	GKGCMC	1 cut(s)	835
BstV1I	GCAGC	2 cut(s)	785, 859
BstV2I	GAAGAC	1 cut(s)	465
BstX2I	RGATCY	2 cut(s)	815, 869
BstYI	RGATCY	2 cut(s)	815, 869
BsuRI	GGCC	1 cut(s)	505
BtsI	GCAGTG	1 cut(s)	871
BtsIMutI	CAGTG	1 cut(s)	871
BveI	ACCTGC	1 cut(s)	697
CfoI	GCGC	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	423, 622
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviAII	CATG	5 cut(s)	377, 536, 595, 836, 881
CviJI	RGCY	7 cut(s)	364, 472, 505, 563, 662, 702, 776
CviKI_1	RGCY	7 cut(s)	364, 472, 505, 563, 662, 702, 776
CviQI	GTAC	2 cut(s)	423, 622
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	7 cut(s)	63, 225, 342, 375, 593, 817, 871
DpnII	GATC	7 cut(s)	61, 223, 340, 373, 591, 815, 869
DraIII	CACNNNGTG	1 cut(s)	884
Eam1104I	CTCTTC	2 cut(s)	210, 652
EarI	CTCTTC	2 cut(s)	210, 652
Eco57I	CTGAAG	1 cut(s)	279
EcoRII	CCWGG	2 cut(s)	264, 315
EcoT22I	ATGCAT	1 cut(s)	550
Esp3I	CGTCTC	1 cut(s)	405
FaeI	CATG	5 cut(s)	380, 539, 598, 839, 884
FalI	AAGNNNNNCTT	2 cut(s)	277, 309
FaqI	GGGAC	1 cut(s)	655
FatI	CATG	5 cut(s)	376, 535, 594, 835, 880
FbaI	TGATCA	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	928
Fnu4HI	GCNGC	2 cut(s)	774, 848
Fsp4HI	GCNGC	2 cut(s)	774, 848
FspBI	CTAG	3 cut(s)	335, 603, 663
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	2 cut(s)	774, 848
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	505
HapII	CCGG	1 cut(s)	932
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	5 cut(s)	380, 539, 598, 839, 884
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	575
HindII	GTYRAC	1 cut(s)	575
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	5 cut(s)	101, 280, 392, 611, 668
HpaII	CCGG	1 cut(s)	932
HphI	GGTGA	3 cut(s)	486, 678, 797
Hpy166II	GTNNAC	5 cut(s)	241, 257, 575, 833, 929
Hpy188I	TCNGA	3 cut(s)	223, 279, 298
Hpy188III	TCNNGA	2 cut(s)	98, 819
Hpy8I	GTNNAC	5 cut(s)	241, 257, 575, 833, 929
HpyAV	CCTTC	2 cut(s)	104, 377
HpyCH4IV	ACGT	3 cut(s)	398, 571, 577
HpyCH4V	TGCA	6 cut(s)	452, 548, 692, 833, 839, 847
HpyF3I	CTNAG	1 cut(s)	531
HpySE526I	ACGT	3 cut(s)	398, 571, 577
Hsp92II	CATG	5 cut(s)	380, 539, 598, 839, 884
HspAI	GCGC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	7 cut(s)	61, 223, 340, 373, 591, 815, 869
LguI	GCTCTTC	1 cut(s)	652
LmnI	GCTCC	1 cut(s)	770
Lsp1109I	GCAGC	2 cut(s)	785, 859
LweI	GCATC	2 cut(s)	177, 557
MaeI	CTAG	3 cut(s)	335, 603, 663
MaeII	ACGT	3 cut(s)	398, 571, 577
MalI	GATC	7 cut(s)	63, 225, 342, 375, 593, 817, 871
MboI	GATC	7 cut(s)	61, 223, 340, 373, 591, 815, 869
MboII	GAAGA	5 cut(s)	71, 197, 370, 470, 669
MflI	RGATCY	2 cut(s)	815, 869
MhlI	GDGCHC	1 cut(s)	835
MluCI	AATT	8 cut(s)	43, 90, 245, 368, 557, 709, 789, 851
MlyI	GAGTC	1 cut(s)	677
Mph1103I	ATGCAT	1 cut(s)	550
MseI	TTAA	2 cut(s)	117, 228
MspA1I	CMGCKG	1 cut(s)	776
MspI	CCGG	1 cut(s)	932
MspR9I	CCNGG	2 cut(s)	266, 317
Mva1269I	GAATGC	2 cut(s)	454, 903
MvaI	CCWGG	2 cut(s)	266, 317
NdeII	GATC	7 cut(s)	61, 223, 340, 373, 591, 815, 869
NlaIII	CATG	5 cut(s)	380, 539, 598, 839, 884
NlaIV	GGNNCC	1 cut(s)	871
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	1 cut(s)	839
PaqCI	CACCTGC	1 cut(s)	697
PciSI	GCTCTTC	1 cut(s)	652
PctI	GAATGC	2 cut(s)	454, 903
PfeI	GAWTC	4 cut(s)	101, 280, 392, 611
PkrI	GCNGC	2 cut(s)	775, 849
PleI	GAGTC	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	676
Psp6I	CCWGG	2 cut(s)	264, 315
PspGI	CCWGG	2 cut(s)	264, 315
PspN4I	GGNNCC	1 cut(s)	871
PsuI	RGATCY	2 cut(s)	815, 869
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	2 cut(s)	424, 623
RsaNI	GTAC	2 cut(s)	423, 622
SapI	GCTCTTC	1 cut(s)	652
SaqAI	TTAA	2 cut(s)	117, 228
SatI	GCNGC	2 cut(s)	774, 848
Sau3AI	GATC	7 cut(s)	61, 223, 340, 373, 591, 815, 869
ScaI	AGTACT	1 cut(s)	623
SchI	GAGTC	1 cut(s)	677
ScrFI	CCNGG	2 cut(s)	266, 317
SduI	GDGCHC	1 cut(s)	835
SfaNI	GCATC	2 cut(s)	177, 557
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
SpeI	ACTAGT	1 cut(s)	602
Sse9I	AATT	8 cut(s)	43, 90, 245, 368, 557, 709, 789, 851
SspMI	CTAG	3 cut(s)	335, 603, 663
StyD4I	CCNGG	2 cut(s)	264, 315
TaiI	ACGT	3 cut(s)	401, 574, 580
TaqI	TCGA	4 cut(s)	34, 108, 214, 441
TasI	AATT	8 cut(s)	43, 90, 245, 368, 557, 709, 789, 851
TatI	WGTACW	1 cut(s)	621
TfiI	GAWTC	4 cut(s)	101, 280, 392, 611
Tru1I	TTAA	2 cut(s)	117, 228
Tru9I	TTAA	2 cut(s)	117, 228
TscAI	CASTG	1 cut(s)	871
TseI	GCWGC	2 cut(s)	773, 847
TspDTI	ATGAA	5 cut(s)	192, 405, 471, 498, 647
TspRI	CASTG	1 cut(s)	871
VneI	GTGCAC	1 cut(s)	831
XapI	RAATTY	4 cut(s)	43, 245, 368, 789
XceI	RCATGY	1 cut(s)	839
XmiI	GTMKAC	1 cut(s)	928
XspI	CTAG	3 cut(s)	335, 603, 663
ZrmI	AGTACT	1 cut(s)	623
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.