Rroxscaffold_1G00032810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003288
Physical Location & Seq
Forward (+)
47157570 .. 47159630
2061 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00032810.1

Sequence Viewer

Length: 288 bp
ATGCTTACTAGTTTGGATTCAATTACAGATCCAGAAGGACGTGAGTACCTACGAATGAAAAAAGTTGAAATAATGGAGAGAAGAGCTCGCGAGTCCCAACTACAAGAATTACCTGCAACATTTGGCTATGGTAATTTTGGATATGGACAACACTATGGAGGAGAAAGTGGTGGATATGGACAACACTATGGAGGAATAGCTGGATATGGTGAAATTCCCTCATTATGGAGGAAGTGGTGGATTTGGAACAAGTGGTGCACATGCAGGAGTGCAGCAATTTGGCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

11.04

Weight (kDa)

8.62

Isoelectric Point (pI)

57.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 121
AccII CGCG 1 cut(s) 90
AciI CCGC 1 cut(s) 283
AclWI GGATC 1 cut(s) 23
AcsI RAATTY 1 cut(s) 213
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 225
AgsI TTSAA 2 cut(s) 21, 68
AhlI ACTAGT 1 cut(s) 8
AjiI CACGTC 1 cut(s) 41
AluBI AGCT 2 cut(s) 86, 200
AluI AGCT 2 cut(s) 86, 200
Alw21I GWGCWC 2 cut(s) 88, 260
Alw44I GTGCAC 1 cut(s) 256
AlwI GGATC 1 cut(s) 23
ApaLI GTGCAC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 221
BaeGI GKGCMC 1 cut(s) 260
BaeI ACNNNNGTAYC 2 cut(s) 29, 62
BanII GRGCYC 1 cut(s) 88
Bbv12I GWGCWC 2 cut(s) 88, 260
BbvI GCAGC 1 cut(s) 284
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 1 cut(s) 9
BfuAI ACCTGC 1 cut(s) 121
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
BmgBI CACGTC 1 cut(s) 41
BplI GAGNNNNNCTC 2 cut(s) 70, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 174
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 1 cut(s) 284
Bsh1236I CGCG 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 88, 260
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 79
Bsp1286I GDGCHC 2 cut(s) 88, 260
Bsp143I GATC 1 cut(s) 28
Bsp68I TCGCGA 1 cut(s) 90
BspACI CCGC 1 cut(s) 283
BspFNI CGCG 1 cut(s) 90
BspMI ACCTGC 1 cut(s) 121
BspPI GGATC 1 cut(s) 23
BspQI GCTCTTC 1 cut(s) 76
BssMI GATC 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 88
BstFNI CGCG 1 cut(s) 90
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstNSI RCATGY 1 cut(s) 264
BstSLI GKGCMC 1 cut(s) 260
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 284
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BtrI CACGTC 1 cut(s) 41
BtuMI TCGCGA 1 cut(s) 90
BveI ACCTGC 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 46
CviAII CATG 1 cut(s) 261
CviJI RGCY 3 cut(s) 86, 126, 200
CviKI_1 RGCY 3 cut(s) 86, 126, 200
CviQI GTAC 1 cut(s) 46
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
Ecl136II GAGCTC 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 88
Eco53kI GAGCTC 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 86
EcoT38I GRGCYC 1 cut(s) 88
FaeI CATG 1 cut(s) 264
FaiI YATR 8 cut(s) 129, 144, 156, 177, 189, 207, 226, 262
FaqI GGGAC 1 cut(s) 79
FatI CATG 1 cut(s) 260
Fnu4HI GCNGC 1 cut(s) 273
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 1 cut(s) 9
GluI GCNGC 1 cut(s) 273
Hin1II CATG 1 cut(s) 264
HinfI GANTC 2 cut(s) 17, 92
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 258
Hpy188III TCNNGA 2 cut(s) 32, 89
Hpy8I GTNNAC 1 cut(s) 258
HpyAV CCTTC 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 40
HpyCH4V TGCA 4 cut(s) 116, 258, 264, 272
HpySE526I ACGT 1 cut(s) 40
Hsp92II CATG 1 cut(s) 264
Kzo9I GATC 1 cut(s) 28
LguI GCTCTTC 1 cut(s) 76
LpnPI CCDG 4 cut(s) 45, 126, 186, 250
Lsp1109I GCAGC 1 cut(s) 284
MaeI CTAG 1 cut(s) 9
MaeII ACGT 1 cut(s) 40
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 1 cut(s) 93
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 2 cut(s) 88, 260
MluCI AATT 5 cut(s) 21, 107, 133, 213, 276
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 4 cut(s) 152, 185, 222, 229
MvnI CGCG 1 cut(s) 90
NdeII GATC 1 cut(s) 28
NlaIII CATG 1 cut(s) 264
NruI TCGCGA 1 cut(s) 90
NspI RCATGY 1 cut(s) 264
PciSI GCTCTTC 1 cut(s) 76
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
Psp124BI GAGCTC 1 cut(s) 88
PsuI RGATCY 1 cut(s) 28
RruI TCGCGA 1 cut(s) 90
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SacI GAGCTC 1 cut(s) 88
SapI GCTCTTC 1 cut(s) 76
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 1 cut(s) 28
SchI GAGTC 1 cut(s) 101
SduI GDGCHC 2 cut(s) 88, 260
SetI ASST 5 cut(s) 43, 51, 88, 115, 202
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 5 cut(s) 21, 107, 133, 213, 276
SsiI CCGC 1 cut(s) 283
SspMI CTAG 1 cut(s) 9
SstI GAGCTC 1 cut(s) 88
TaiI ACGT 1 cut(s) 43
TasI AATT 5 cut(s) 21, 107, 133, 213, 276
TfiI GAWTC 1 cut(s) 17
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 1 cut(s) 71
VneI GTGCAC 1 cut(s) 256
XapI RAATTY 1 cut(s) 213
XceI RCATGY 1 cut(s) 264
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.