Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003288

Physical Location & Seq

Genomic Coordinates Reverse (-)

33658521 .. 33662030

Gene Structure 3510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00411090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGACAATGTTAGTTACAGCTCATATCAATGACAATGTCGATTACATAGTCGATTACTTGGCCGATTACATATGTTGTAAGAGGTTAACAAACGTTGCTAATGAGTTGGCCTTTTCCGTGACCTTAATTATCAGCGGGACATTTGTGCTCTCACTCTCGGACTATCTCTCTCAGGCAAGTGTAGGAGTTGCTCATGCATTAGTCGGGGTGAACAAGCCAGAACTGCTTCCAAAAGAGTTCAGTCCAGTGATTGATGTAGCCGGCTTCCTCTCCGATGGTCAGGAGAAAAGGCTAGCTCAGGAGATTGCTAATATAGAGAAGGATACTGGATTCAAGTTGAGGGTTCTTGCTCAGAACTATCCTGACACGCCAGGTTTGGCGATCAAAGATTTCTGGCAAGTGGATGATAGAACTATTGTCTTTGTTGCTGATCCCACTTTTGGGAATATACTAAACTTCAATGTGGGAGCTCTGGTTGATCTAGATGTTCCGCGCAGCTTTTGGAGTCGTTTGGCTGGGAAGTATGGGAATATGTTTTATTGGAAAGAGAAGGGGGAAGATGGATCAATTGAAGCTGCTGTAACGGCAATATCTAACTGCTTGAGAGAACCTGTAGGCTCTAATAATTGCTCCGAGGTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0031977 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044436 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPM_phosphatase

Protein Analysis

214

Amino Acids

23.52

Weight (kDa)

4.61

Isoelectric Point (pI)

28.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52970 AT5G52970
fragaria_vesca	FvH4_6g16320
malus_domestica	MD12G1113500.v1.1
prunus_persica	Prupe.6G232400_v2.0.a1 Prupe.6G232400_v2.0.a1
pyrus_communis	pycom12g11240
rosa_chinensis	RchiOBHm_Chr3g0470171 RchiOBHm_Chr6g0296991
rosa_laevigata	RLG00000002142 RLG00000013529 RLG00000013767 RLG00000014335 RLG00000018311 RLG00000023700 RLG00000024291 RLG00000036706
rosa_multiflora	Rmu_sc0001548.1_g000020 Rmu_sc0005600.1_g000016
rosa_roxburghii	Rroxscaffold_1G00032810 Rroxscaffold_6G00411090 Rroxscaffold_6G00411120
rosa_rugosa	Rorug03G0107500 Rorug07G0274800
rosa_samantha	Rh2CG519300 Rh3AG156600 Rh3BG180700 Rh3CG171500 Rh3DG194200
rosa_wichuraiana	Rw0G005420 Rw0G008560 Rw3G014850 Rw3G014880 Rw4G006390 Rw6G009380 Rw7G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	493
AciI	CCGC	2 cut(s)	135, 491
AclI	AACGTT	1 cut(s)	93
AclWI	GGATC	2 cut(s)	425, 571
AcoI	YGGCCR	1 cut(s)	60
AfiI	CCNNNNNNNGG	2 cut(s)	440, 441
AgsI	TTSAA	3 cut(s)	334, 460, 572
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	5 cut(s)	20, 296, 470, 498, 575
AluI	AGCT	5 cut(s)	20, 296, 470, 498, 575
Alw21I	GWGCWC	2 cut(s)	150, 472
AlwI	GGATC	2 cut(s)	425, 571
AoxI	GGCC	2 cut(s)	60, 108
ApeKI	GCWGC	2 cut(s)	495, 575
Asp700I	GAANNNNTTC	1 cut(s)	225
AspLEI	GCGC	1 cut(s)	495
AsuHPI	GGTGA	1 cut(s)	220
AsuNHI	GCTAGC	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	472
Bbv12I	GWGCWC	2 cut(s)	150, 472
BbvI	GCAGC	2 cut(s)	507, 562
BccI	CCATC	2 cut(s)	269, 554
BceAI	ACGGC	1 cut(s)	600
BciT130I	CCWGG	1 cut(s)	372
BciVI	GTATCC	1 cut(s)	316
BfaI	CTAG	2 cut(s)	293, 482
BfmI	CTRYAG	1 cut(s)	612
BfuI	GTATCC	1 cut(s)	316
BisI	GCNGC	2 cut(s)	496, 576
BlsI	GCNGC	2 cut(s)	497, 577
Bme1390I	CCNGG	1 cut(s)	372
BmrFI	CCNGG	1 cut(s)	372
BmtI	GCTAGC	1 cut(s)	296
Bpu10I	CCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	622
BsaJI	CCNNGG	1 cut(s)	633
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bsc4I	CCNNNNNNNGG	2 cut(s)	440, 441
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	2 cut(s)	245, 331
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	633
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	2 cut(s)	440, 441
BseMII	CTCAG	3 cut(s)	185, 311, 365
BseNI	ACTGG	2 cut(s)	245, 331
BseXI	GCAGC	2 cut(s)	507, 562
BseYI	CCCAGC	1 cut(s)	515
Bsh1236I	CGCG	1 cut(s)	493
BshFI	GGCC	2 cut(s)	62, 110
BsiHKAI	GWGCWC	2 cut(s)	150, 472
BsiSI	CCGG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	440, 441
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	2 cut(s)	62, 110
Bsp1286I	GDGCHC	2 cut(s)	150, 472
Bsp143I	GATC	4 cut(s)	381, 430, 478, 563
BspACI	CCGC	2 cut(s)	135, 491
BspANI	GGCC	2 cut(s)	62, 110
BspCNI	CTCAG	3 cut(s)	184, 310, 364
BspFNI	CGCG	1 cut(s)	493
BspOI	GCTAGC	1 cut(s)	296
BspPI	GGATC	2 cut(s)	425, 571
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	2 cut(s)	245, 331
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	1 cut(s)	633
BssMI	GATC	4 cut(s)	381, 430, 478, 563
Bst2UI	CCWGG	1 cut(s)	372
BstC8I	GCNNGC	2 cut(s)	262, 294
BstDEI	CTNAG	3 cut(s)	171, 297, 351
BstF5I	GGATG	1 cut(s)	409
BstFNI	CGCG	1 cut(s)	493
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	4 cut(s)	384, 433, 481, 566
BstMBI	GATC	4 cut(s)	381, 430, 478, 563
BstMWI	GCNNNNNNNGC	2 cut(s)	223, 584
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	612
BstUI	CGCG	1 cut(s)	493
BstV1I	GCAGC	2 cut(s)	507, 562
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	2 cut(s)	62, 110
BtsCI	GGATG	1 cut(s)	409
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	2 cut(s)	262, 294
CfoI	GCGC	1 cut(s)	495
Cfr10I	RCCGGY	1 cut(s)	260
CviAII	CATG	1 cut(s)	194
DdeI	CTNAG	3 cut(s)	171, 297, 351
DpnI	GATC	4 cut(s)	383, 432, 480, 565
DpnII	GATC	4 cut(s)	381, 430, 478, 563
EaeI	YGGCCR	1 cut(s)	60
Ecl136II	GAGCTC	1 cut(s)	470
Eco24I	GRGCYC	1 cut(s)	472
Eco53kI	GAGCTC	1 cut(s)	470
EcoICRI	GAGCTC	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	370
EcoT22I	ATGCAT	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	472
FaeI	CATG	1 cut(s)	197
FaiI	YATR	9 cut(s)	24, 47, 71, 73, 195, 314, 449, 525, 533
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	1 cut(s)	193
FauI	CCCGC	1 cut(s)	128
FauNDI	CATATG	1 cut(s)	71
Fnu4HI	GCNGC	2 cut(s)	496, 576
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	1 cut(s)	472
Fsp4HI	GCNGC	2 cut(s)	496, 576
FspBI	CTAG	2 cut(s)	293, 482
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	2 cut(s)	496, 576
GsaI	CCCAGC	1 cut(s)	519
HaeIII	GGCC	2 cut(s)	62, 110
HapII	CCGG	1 cut(s)	261
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	1 cut(s)	197
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HinfI	GANTC	2 cut(s)	330, 505
HpaI	GTTAAC	1 cut(s)	87
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	2 cut(s)	87, 211
Hpy188I	TCNGA	4 cut(s)	160, 274, 354, 634
Hpy188III	TCNNGA	4 cut(s)	281, 299, 362, 482
Hpy8I	GTNNAC	2 cut(s)	87, 211
HpyAV	CCTTC	2 cut(s)	313, 544
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	223, 584
HpyF3I	CTNAG	3 cut(s)	171, 297, 351
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	197
HspAI	GCGC	1 cut(s)	493
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
KspAI	GTTAAC	1 cut(s)	87
Kzo9I	GATC	4 cut(s)	381, 430, 478, 563
LmnI	GCTCC	2 cut(s)	467, 635
Lsp1109I	GCAGC	2 cut(s)	507, 562
MaeI	CTAG	2 cut(s)	293, 482
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	3 cut(s)	13, 118, 580
MalI	GATC	4 cut(s)	383, 432, 480, 565
MboI	GATC	4 cut(s)	381, 430, 478, 563
MboII	GAAGA	1 cut(s)	569
MfeI	CAATTG	1 cut(s)	567
MhlI	GDGCHC	2 cut(s)	150, 472
MluCI	AATT	4 cut(s)	126, 567, 625, 640
MlyI	GAGTC	1 cut(s)	514
MnlI	CCTC	4 cut(s)	75, 278, 333, 628
Mph1103I	ATGCAT	1 cut(s)	199
MroNI	GCCGGC	1 cut(s)	260
MroXI	GAANNNNTTC	1 cut(s)	225
MseI	TTAA	3 cut(s)	86, 125, 643
MslI	CAYNNNNRTG	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	372
MunI	CAATTG	1 cut(s)	567
MvaI	CCWGG	1 cut(s)	372
MvnI	CGCG	1 cut(s)	493
MwoI	GCNNNNNNNGC	2 cut(s)	223, 584
NaeI	GCCGGC	1 cut(s)	262
NdeI	CATATG	1 cut(s)	71
NdeII	GATC	4 cut(s)	381, 430, 478, 563
NgoMIV	GCCGGC	1 cut(s)	260
NheI	GCTAGC	1 cut(s)	292
NlaIII	CATG	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	199
PdiI	GCCGGC	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	330
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	2 cut(s)	497, 577
PleI	GAGTC	1 cut(s)	513
PpsI	GAGTC	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	472
Psp1406I	AACGTT	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	370
PspFI	CCCAGC	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	370
PsyI	GACNNNGTC	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	27
SacI	GAGCTC	1 cut(s)	472
SaqAI	TTAA	3 cut(s)	86, 125, 643
SatI	GCNGC	2 cut(s)	496, 576
Sau3AI	GATC	4 cut(s)	381, 430, 478, 563
SchI	GAGTC	1 cut(s)	514
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	2 cut(s)	150, 472
SfcI	CTRYAG	1 cut(s)	612
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	601
SmoI	CTYRAG	1 cut(s)	601
Sse9I	AATT	4 cut(s)	126, 567, 625, 640
SsiI	CCGC	2 cut(s)	135, 491
SspMI	CTAG	2 cut(s)	293, 482
SstI	GAGCTC	1 cut(s)	472
StyD4I	CCNGG	1 cut(s)	370
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	39, 51
TasI	AATT	4 cut(s)	126, 567, 625, 640
TfiI	GAWTC	1 cut(s)	330
Tru1I	TTAA	3 cut(s)	86, 125, 643
Tru9I	TTAA	3 cut(s)	86, 125, 643
TscAI	CASTG	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	495, 575
Tsp45I	GTSAC	1 cut(s)	118
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	252
Tth111I	GACNNNGTC	1 cut(s)	35
XbaI	TCTAGA	1 cut(s)	481
XmnI	GAANNNNTTC	1 cut(s)	225
XspI	CTAG	2 cut(s)	293, 482
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.