Rorug07G0274800

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003288
Physical Location & Seq
Reverse (-)
26229906 .. 26231618
1713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0274800.1

Sequence Viewer

Length: 1386 bp
ATGGAACTTGAGGCTGCTGAATTTGAGGTGAACTTCACCAGAAAATTCATTGTCAAAGCTTCAAATCCCTTGGTGAAGCCTCATATCCTCACTCTCTCAAACCTAGACTTGCTCTCAGGCCGCTTTCCAGTCACATACTTCTATTTCTATCCCAGCAAACCAAATGCCAACATTAATATCATAGAATCCCTCAAGAGCTCCCTAGCTAAAACCCTCAATTCCTACTACCCATTTGCTGGTCGGATTGTCCTAAATCCAAATACCAACGAACCCGAAATCATGTGTGACAATAGCGGAGCTCTAGTTCTTGAAGCTCAAGCTAACATTTCTTTAAACACATTAAACTTCTATGATCTTGATCAGTCTCTTCGAGGGAACAAGCTAGTCTCCATCCATCCCGACTTTCCTCTACAAATCCAAGTCACATATTACACTTGTGGGGGTGTTTCGATTACATTCACTTTTGACCATGCACTTGGGGATGCTAGTAGCTTTGGTAAATTCCTCCTTTCGTGGTCGGAAATGGCCCGAAACAAGCCAATCTCCTGCGTACCGGATCACCAGAGAAACCTCCGAATCAGTGCACGCAACCCTCCTAGGTACCACTCCTCCTTGGACCAAAGTTTTGTCAAGTGCACCATGGAAGAGATCATGAATATCCCAACACCAAAAACCTTGGTTAAGCGGCTTTATTTCATCGATAATTCCAGCATTAATCAGCTGCAAAGTCAAGCATGTAGAAATGGTATGAAGAGAACAAAAATTGAGGCGGTCTCGGCCTATGTATGGAAAACTATGGTCAAAGCCAATATCGGTACCAGCACTAACAAAACCCATACTGCAATGTGTAAGATGGGCTGGTTAGTGGATGGACGATCTAGATTGCATAAAAGAGATCCAAATCCGAATTCCAATTTGTCAAATTACATTGGGAATGTGTTGTCTTTGGCTTTTGGAGAGGCAAGTGTGGATGAGTTGAAGAAGGGTTCTATATCAGATGTTGCTAACATAGTGCGTGAGGCAATTTCTAAGGTAACAAATGAGGAACATTTCTTGGATTTGATTGATTGGATTGAGTGCAACAGGCCAGGATTAATGCTATCCAAGATTGTGCTAGGACAAGGAGGAGTGCCGGCACTTGTTTTGTCGTCGGGGAGAATGTTTCCGGTTGCTGAATTGGACTTCGGATTTGGGAGTCCGGTGCTTGGGACAGTGTGTTCAACTATTGAGAGGATTGGAGTGGCTTACATGAACCAAAGGCCAAGTGCAAAGGGTGATGGTTCTTGGACTGTCTCATGTATCCTATGGCCAGAATTAGCAGCTGCTTTAGAATCTGACTCCATTTTTCAGCCTATGACTGCTGGCCATCTACAACTTCAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

461

Amino Acids

51.12

Weight (kDa)

8.27

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 9 - 444 3e-75 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 600, 815
AccB1I GGYRCC 2 cut(s) 600, 815
AccB7I CCANNNNNTGG 1 cut(s) 236
AciI CCGC 4 cut(s) 121, 294, 685, 770
AclWI GGATC 2 cut(s) 564, 890
AcoI YGGCCR 2 cut(s) 1307, 1363
AcsI RAATTY 4 cut(s) 20, 44, 500, 907
AfaI GTAC 3 cut(s) 552, 602, 817
AfiI CCNNNNNNNGG 3 cut(s) 236, 786, 1205
AgsI TTSAA 5 cut(s) 63, 311, 979, 1221, 1379
AjnI CCWGG 1 cut(s) 1087
AjuI GAANNNNNNNTTGG 2 cut(s) 892, 924
AloI GAACNNNNNNTCC 4 cut(s) 288, 320, 1201, 1233
Alw21I GWGCWC 4 cut(s) 200, 301, 586, 638
Alw26I GTCTC 4 cut(s) 369, 391, 778, 1297
Alw44I GTGCAC 2 cut(s) 582, 634
AlwI GGATC 2 cut(s) 564, 890
AoxI GGCC 7 cut(s) 118, 525, 777, 1085, 1259, 1307, 1363
ApaLI GTGCAC 2 cut(s) 582, 634
ApeKI GCWGC 4 cut(s) 14, 721, 1319, 1322
ApoI RAATTY 4 cut(s) 20, 44, 500, 907
ArsI GACNNNNNNTTYG 4 cut(s) 608, 640, 1172, 1204
AseI ATTAAT 3 cut(s) 174, 714, 1094
Asp718I GGTACC 2 cut(s) 600, 815
AspA2I CCTAGG 1 cut(s) 596
AspS9I GGNCC 2 cut(s) 526, 616
AsuHPI GGTGA 5 cut(s) 28, 40, 85, 551, 1286
AvaII GGWCC 1 cut(s) 616
AvrII CCTAGG 1 cut(s) 596
BaeGI GKGCMC 2 cut(s) 586, 638
BalI TGGCCA 2 cut(s) 1309, 1365
BanI GGYRCC 2 cut(s) 600, 815
BanII GRGCYC 2 cut(s) 200, 301
Bbv12I GWGCWC 4 cut(s) 200, 301, 586, 638
BbvI GCAGC 3 cut(s) 708, 1309, 1331
BccI CCATC 6 cut(s) 398, 402, 847, 863, 1271, 1374
BciT130I CCWGG 1 cut(s) 1089
BciVI GTATCC 1 cut(s) 1310
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 4 cut(s) 369, 391, 778, 1297
BfaI CTAG 9 cut(s) 104, 203, 302, 383, 486, 597, 879, 1115, 1384
BfuI GTATCC 1 cut(s) 1310
BisI GCNGC 6 cut(s) 15, 121, 686, 722, 1320, 1323
BlnI CCTAGG 1 cut(s) 596
BlsI GCNGC 6 cut(s) 16, 122, 687, 723, 1321, 1324
Bme1390I CCNGG 1 cut(s) 1089
Bme18I GGWCC 1 cut(s) 616
BmgT120I GGNCC 2 cut(s) 526, 616
BmiI GGNNCC 2 cut(s) 602, 817
BmrFI CCNGG 1 cut(s) 1089
BmsI GCATC 1 cut(s) 472
BplI GAGNNNNNCTC 2 cut(s) 758, 790
BpuEI CTTGAG 3 cut(s) 29, 176, 300
Bsa29I ATCGAT 1 cut(s) 699
BsaBI GATNNNNATC 2 cut(s) 357, 900
BsaI GGTCTC 1 cut(s) 778
BsaJI CCNNGG 5 cut(s) 69, 596, 612, 639, 675
BsaWI WCCGGW 3 cut(s) 553, 1165, 1198
BsaXI ACNNNNNCTCC 4 cut(s) 288, 318, 593, 623
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 786, 1205
Bse118I RCCGGY 1 cut(s) 1132
Bse1I ACTGG 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 849
Bse8I GATNNNNATC 2 cut(s) 357, 900
BseBI CCWGG 1 cut(s) 1089
BseCI ATCGAT 1 cut(s) 699
BseDI CCNNGG 5 cut(s) 69, 596, 612, 639, 675
BseGI GGATG 5 cut(s) 390, 394, 487, 874, 976
BseJI GATNNNNATC 2 cut(s) 357, 900
BseLI CCNNNNNNNGG 3 cut(s) 236, 786, 1205
BseMI GCAATG 1 cut(s) 849
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 2 cut(s) 598, 1140
BseSI GKGCMC 2 cut(s) 586, 638
BseXI GCAGC 3 cut(s) 708, 1309, 1331
BseYI CCCAGC 1 cut(s) 152
BshFI GGCC 7 cut(s) 120, 527, 779, 1087, 1261, 1309, 1365
BshNI GGYRCC 2 cut(s) 600, 815
BshVI ATCGAT 1 cut(s) 699
BsiHKAI GWGCWC 4 cut(s) 200, 301, 586, 638
BsiSI CCGG 4 cut(s) 554, 1133, 1166, 1199
BslFI GGGAC 1 cut(s) 1222
BslI CCNNNNNNNGG 3 cut(s) 236, 786, 1205
BsmAI GTCTC 4 cut(s) 369, 391, 778, 1297
BsmFI GGGAC 1 cut(s) 1222
BsnI GGCC 7 cut(s) 120, 527, 779, 1087, 1261, 1309, 1365
Bso31I GGTCTC 1 cut(s) 778
Bsp1286I GDGCHC 4 cut(s) 200, 301, 586, 638
Bsp143I GATC 6 cut(s) 352, 358, 556, 648, 875, 895
Bsp19I CCATGG 1 cut(s) 639
BspACI CCGC 4 cut(s) 121, 294, 685, 770
BspANI GGCC 7 cut(s) 120, 527, 779, 1087, 1261, 1309, 1365
BspCNI CTCAG 1 cut(s) 128
BspDI ATCGAT 1 cut(s) 699
BspHI TCATGA 1 cut(s) 651
BspLI GGNNCC 2 cut(s) 602, 817
BspPI GGATC 2 cut(s) 564, 890
BspT107I GGYRCC 2 cut(s) 600, 815
BspTNI GGTCTC 1 cut(s) 778
BsrDI GCAATG 1 cut(s) 849
BsrFI RCCGGY 1 cut(s) 1132
BsrI ACTGG 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 1132
BssECI CCNNGG 5 cut(s) 69, 596, 612, 639, 675
BssMI GATC 6 cut(s) 352, 358, 556, 648, 875, 895
BssT1I CCWWGG 5 cut(s) 69, 596, 612, 639, 675
Bst2UI CCWGG 1 cut(s) 1089
Bst4CI ACNGT 2 cut(s) 1213, 1291
Bst6I CTCTTC 3 cut(s) 372, 639, 746
BstC8I GCNNGC 3 cut(s) 586, 1134, 1363
BstDEI CTNAG 2 cut(s) 115, 1029
BstDSI CCRYGG 1 cut(s) 639
BstF5I GGATG 5 cut(s) 390, 394, 487, 874, 976
BstKTI GATC 6 cut(s) 355, 361, 559, 651, 878, 898
BstMAI GTCTC 4 cut(s) 369, 391, 778, 1297
BstMBI GATC 6 cut(s) 352, 358, 556, 648, 875, 895
BstMWI GCNNNNNNNGC 1 cut(s) 776
BstNI CCWGG 1 cut(s) 1089
BstNSI RCATGY 1 cut(s) 738
BstSCI CCNGG 1 cut(s) 1087
BstSLI GKGCMC 2 cut(s) 586, 638
BstV1I GCAGC 3 cut(s) 708, 1309, 1331
BstX2I RGATCY 1 cut(s) 895
BstXI CCANNNNNNTGG 1 cut(s) 476
BstYI RGATCY 1 cut(s) 895
Bsu15I ATCGAT 1 cut(s) 699
BsuI GTATCC 1 cut(s) 1310
BsuRI GGCC 7 cut(s) 120, 527, 779, 1087, 1261, 1309, 1365
BsuTUI ATCGAT 1 cut(s) 699
BtgI CCRYGG 1 cut(s) 639
BtsCI GGATG 5 cut(s) 390, 394, 487, 874, 976
BtsIMutI CAGTG 2 cut(s) 586, 1218
Cac8I GCNNGC 3 cut(s) 586, 1134, 1363
CciI TCATGA 1 cut(s) 651
Cfr10I RCCGGY 1 cut(s) 1132
Cfr13I GGNCC 2 cut(s) 526, 616
ClaI ATCGAT 1 cut(s) 699
Csp6I GTAC 3 cut(s) 551, 601, 816
CviAII CATG 7 cut(s) 280, 470, 640, 652, 735, 1249, 1296
CviQI GTAC 3 cut(s) 551, 601, 816
DdeI CTNAG 2 cut(s) 115, 1029
DpnI GATC 6 cut(s) 354, 360, 558, 650, 877, 897
DpnII GATC 6 cut(s) 352, 358, 556, 648, 875, 895
DraI TTTAAA 1 cut(s) 333
EaeI YGGCCR 2 cut(s) 1307, 1363
Eam1104I CTCTTC 3 cut(s) 372, 639, 746
EarI CTCTTC 3 cut(s) 372, 639, 746
Ecl136II GAGCTC 2 cut(s) 198, 299
Eco130I CCWWGG 5 cut(s) 69, 596, 612, 639, 675
Eco24I GRGCYC 2 cut(s) 200, 301
Eco31I GGTCTC 1 cut(s) 778
Eco47I GGWCC 1 cut(s) 616
Eco53kI GAGCTC 2 cut(s) 198, 299
EcoICRI GAGCTC 2 cut(s) 198, 299
EcoRI GAATTC 1 cut(s) 907
EcoRII CCWGG 1 cut(s) 1087
EcoT14I CCWWGG 5 cut(s) 69, 596, 612, 639, 675
EcoT38I GRGCYC 2 cut(s) 200, 301
ErhI CCWWGG 5 cut(s) 69, 596, 612, 639, 675
FaeI CATG 7 cut(s) 283, 473, 643, 655, 738, 1252, 1299
FaqI GGGAC 1 cut(s) 1222
FatI CATG 7 cut(s) 279, 469, 639, 651, 734, 1248, 1295
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 6 cut(s) 15, 121, 686, 722, 1320, 1323
FokI GGATG 5 cut(s) 377, 381, 494, 881, 983
FriOI GRGCYC 2 cut(s) 200, 301
Fsp4HI GCNGC 6 cut(s) 15, 121, 686, 722, 1320, 1323
FspBI CTAG 9 cut(s) 104, 203, 302, 383, 486, 597, 879, 1115, 1384
GluI GCNGC 6 cut(s) 15, 121, 686, 722, 1320, 1323
GsaI CCCAGC 1 cut(s) 156
HaeIII GGCC 7 cut(s) 120, 527, 779, 1087, 1261, 1309, 1365
HapII CCGG 4 cut(s) 554, 1133, 1166, 1199
Hin1II CATG 7 cut(s) 283, 473, 643, 655, 738, 1252, 1299
HindIII AAGCTT 1 cut(s) 57
HinfI GANTC 5 cut(s) 185, 576, 1195, 1331, 1337
HpaII CCGG 4 cut(s) 554, 1133, 1166, 1199
HphI GGTGA 5 cut(s) 28, 40, 85, 551, 1286
Hpy166II GTNNAC 3 cut(s) 31, 584, 636
Hpy188I TCNGA 7 cut(s) 243, 520, 575, 906, 997, 1187, 1336
Hpy188III TCNNGA 6 cut(s) 193, 308, 356, 398, 652, 879
Hpy8I GTNNAC 3 cut(s) 31, 584, 636
Hpy99I CGWCG 1 cut(s) 1153
HpyAV CCTTC 1 cut(s) 976
HpyCH4III ACNGT 2 cut(s) 1213, 1291
HpyCH4V TGCA 8 cut(s) 473, 584, 636, 724, 842, 886, 1080, 1268
HpyF10VI GCNNNNNNNGC 1 cut(s) 776
HpyF3I CTNAG 2 cut(s) 115, 1029
Hsp92II CATG 7 cut(s) 283, 473, 643, 655, 738, 1252, 1299
KpnI GGTACC 2 cut(s) 604, 819
KroI GCCGGC 1 cut(s) 1132
KroNI GCCGGC 1 cut(s) 1134
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 6 cut(s) 352, 358, 556, 648, 875, 895
LmnI GCTCC 2 cut(s) 203, 296
Lsp1109I GCAGC 3 cut(s) 708, 1309, 1331
LweI GCATC 1 cut(s) 472
MaeI CTAG 9 cut(s) 104, 203, 302, 383, 486, 597, 879, 1115, 1384
MaeIII GTNAC 4 cut(s) 130, 284, 421, 1033
MalI GATC 6 cut(s) 354, 360, 558, 650, 877, 897
MboI GATC 6 cut(s) 352, 358, 556, 648, 875, 895
MboII GAAGA 4 cut(s) 359, 656, 763, 991
MflI RGATCY 1 cut(s) 895
MhlI GDGCHC 4 cut(s) 200, 301, 586, 638
MlsI TGGCCA 2 cut(s) 1309, 1365
MluNI TGGCCA 2 cut(s) 1309, 1365
MlyI GAGTC 2 cut(s) 1204, 1331
MmeI TCCRAC 2 cut(s) 221, 498
Mox20I TGGCCA 2 cut(s) 1309, 1365
MroNI GCCGGC 1 cut(s) 1132
MscI TGGCCA 2 cut(s) 1309, 1365
MseI TTAA 6 cut(s) 174, 332, 341, 681, 714, 1094
Msp20I TGGCCA 2 cut(s) 1309, 1365
MspA1I CMGCKG 2 cut(s) 721, 1322
MspI CCGG 4 cut(s) 554, 1133, 1166, 1199
MspR9I CCNGG 1 cut(s) 1089
MvaI CCWGG 1 cut(s) 1089
MwoI GCNNNNNNNGC 1 cut(s) 776
NaeI GCCGGC 1 cut(s) 1134
NcoI CCATGG 1 cut(s) 639
NdeII GATC 6 cut(s) 352, 358, 556, 648, 875, 895
NgoMIV GCCGGC 1 cut(s) 1132
NlaIII CATG 7 cut(s) 283, 473, 643, 655, 738, 1252, 1299
NlaIV GGNNCC 2 cut(s) 602, 817
NmeAIII GCCGAG 1 cut(s) 755
NmuCI GTSAC 3 cut(s) 130, 284, 421
NspI RCATGY 1 cut(s) 738
PagI TCATGA 1 cut(s) 651
PdiI GCCGGC 1 cut(s) 1134
PfeI GAWTC 3 cut(s) 185, 576, 1331
PflMI CCANNNNNTGG 1 cut(s) 236
PkrI GCNGC 6 cut(s) 16, 122, 687, 723, 1321, 1324
PleI GAGTC 2 cut(s) 1203, 1331
PpsI GAGTC 2 cut(s) 1203, 1331
PshBI ATTAAT 3 cut(s) 174, 714, 1094
Psp124BI GAGCTC 2 cut(s) 200, 301
Psp6I CCWGG 1 cut(s) 1087
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 1087
PspN4I GGNNCC 2 cut(s) 602, 817
PspPI GGNCC 2 cut(s) 526, 616
PsuI RGATCY 1 cut(s) 895
PvuII CAGCTG 2 cut(s) 721, 1322
RsaI GTAC 3 cut(s) 552, 602, 817
RsaNI GTAC 3 cut(s) 551, 601, 816
SacI GAGCTC 2 cut(s) 200, 301
SaqAI TTAA 6 cut(s) 174, 332, 341, 681, 714, 1094
SatI GCNGC 6 cut(s) 15, 121, 686, 722, 1320, 1323
Sau3AI GATC 6 cut(s) 352, 358, 556, 648, 875, 895
Sau96I GGNCC 2 cut(s) 526, 616
SchI GAGTC 2 cut(s) 1204, 1331
ScrFI CCNGG 1 cut(s) 1089
SduI GDGCHC 4 cut(s) 200, 301, 586, 638
SfaNI GCATC 1 cut(s) 472
SinI GGWCC 1 cut(s) 616
SmlI CTYRAG 3 cut(s) 8, 191, 315
SmoI CTYRAG 3 cut(s) 8, 191, 315
SsiI CCGC 4 cut(s) 121, 294, 685, 770
SspMI CTAG 9 cut(s) 104, 203, 302, 383, 486, 597, 879, 1115, 1384
SstI GAGCTC 2 cut(s) 200, 301
StyD4I CCNGG 1 cut(s) 1087
StyI CCWWGG 5 cut(s) 69, 596, 612, 639, 675
TaaI ACNGT 2 cut(s) 1213, 1291
TaqI TCGA 3 cut(s) 370, 449, 699
TauI GCSGC 2 cut(s) 123, 688
TfiI GAWTC 3 cut(s) 185, 576, 1331
Tru1I TTAA 6 cut(s) 174, 332, 341, 681, 714, 1094
Tru9I TTAA 6 cut(s) 174, 332, 341, 681, 714, 1094
TscAI CASTG 2 cut(s) 586, 1218
TseFI GTSAC 3 cut(s) 130, 284, 421
TseI GCWGC 4 cut(s) 14, 721, 1319, 1322
Tsp45I GTSAC 3 cut(s) 130, 284, 421
TspDTI ATGAA 5 cut(s) 37, 668, 685, 764, 1265
TspRI CASTG 2 cut(s) 586, 1218
Van91I CCANNNNNTGG 1 cut(s) 236
VneI GTGCAC 2 cut(s) 582, 634
VpaK11BI GGWCC 1 cut(s) 616
VspI ATTAAT 3 cut(s) 174, 714, 1094
XapI RAATTY 4 cut(s) 20, 44, 500, 907
XbaI TCTAGA 1 cut(s) 878
XceI RCATGY 1 cut(s) 738
XmaJI CCTAGG 1 cut(s) 596
XspI CTAG 9 cut(s) 104, 203, 302, 383, 486, 597, 879, 1115, 1384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.