Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Forward (+)

24964646 .. 24968607

Gene Structure 3962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G62165.13

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGTTAGAGGAAAGATAGAGATGAAGAAAATAGAAAACGCAACGAGTAGACAAGTGACTTTCTCAAAAAGAAGAAATGGTTTGTTGAAGAAAGCTTATGAGCTCTCAGTACTCTGCGATGCTCAACTCTCTCTCATCATCTTCTCCCAGAGAGGAAGGCTTTATGAATTCTCTAGCTCTGATATGCAGAAGACGATCGAACGCTACCGCAAGTACACAAAAGATCATGAAACCAGCAATCACGACTCACAAATTCACTTGCAGCAATTGAAACAAGAAGCAAGCCACATGATAACAAAGATTGAACTCCTTGAGTTTCACAAGCGGAAGCTATTGGGACAAGGAATTGCTTCTTGTTCTCTAGAAGAGCTTCAAGAAATCGATAGTCAACTCCAAAGAAGTCTGGGAAAGGTCCGAGAAAGAAAGGCTCAATTGTTCAAGGAGCAGTTGGAGAAACTAAAAGCAAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

157

Amino Acids

18.42

Weight (kDa)

9.75

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2.8e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	84 - 147	7.3e-15	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	49
AciI	CCGC	2 cut(s)	208, 325
AcsI	RAATTY	2 cut(s)	167, 252
AfaI	GTAC	2 cut(s)	111, 215
AgsI	TTSAA	5 cut(s)	88, 271, 305, 374, 439
AluBI	AGCT	5 cut(s)	95, 103, 177, 331, 370
AluI	AGCT	5 cut(s)	95, 103, 177, 331, 370
Alw21I	GWGCWC	1 cut(s)	105
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	2 cut(s)	167, 252
Asp700I	GAANNNNTTC	2 cut(s)	349, 369
AspS9I	GGNCC	1 cut(s)	412
AvaII	GGWCC	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	274
BfaI	CTAG	2 cut(s)	174, 362
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
BmcAI	AGTACT	1 cut(s)	111
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	412
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	332
Bsa29I	ATCGAT	1 cut(s)	381
BseCI	ATCGAT	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	274
Bsh1285I	CGRYCG	1 cut(s)	198
BshVI	ATCGAT	1 cut(s)	381
BsiEI	CGRYCG	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	351
BsmFI	GGGAC	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	195, 223
BspACI	CCGC	2 cut(s)	208, 325
BspCNI	CTCAG	1 cut(s)	119
BspDI	ATCGAT	1 cut(s)	381
BspHI	TCATGA	1 cut(s)	226
BspQI	GCTCTTC	1 cut(s)	360
BssMI	GATC	2 cut(s)	195, 223
Bst6I	CTCTTC	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	1 cut(s)	106
BstKTI	GATC	2 cut(s)	198, 226
BstMBI	GATC	2 cut(s)	195, 223
BstMCI	CGRYCG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	197
Bsu15I	ATCGAT	1 cut(s)	381
BsuTUI	ATCGAT	1 cut(s)	381
BtgZI	GCGATG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	283
CciI	TCATGA	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	412
ClaI	ATCGAT	1 cut(s)	381
Csp6I	GTAC	2 cut(s)	110, 214
CviAII	CATG	2 cut(s)	227, 289
CviJI	RGCY	8 cut(s)	95, 103, 160, 177, 285, 331, 370, 428
CviKI_1	RGCY	8 cut(s)	95, 103, 160, 177, 285, 331, 370, 428
CviQI	GTAC	2 cut(s)	110, 214
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	2 cut(s)	197, 225
DpnII	GATC	2 cut(s)	195, 223
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	412
Eco53kI	GAGCTC	1 cut(s)	103
EcoICRI	GAGCTC	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	2 cut(s)	230, 292
FaiI	YATR	5 cut(s)	99, 165, 185, 228, 290
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	2 cut(s)	226, 288
FblI	GTMKAC	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	263
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	263
FspBI	CTAG	2 cut(s)	174, 362
GluI	GCNGC	1 cut(s)	263
Hin1II	CATG	2 cut(s)	230, 292
HincII	GTYRAC	1 cut(s)	389
HindII	GTYRAC	1 cut(s)	389
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	1 cut(s)	245
Hpy166II	GTNNAC	3 cut(s)	50, 216, 389
Hpy188I	TCNGA	2 cut(s)	181, 416
Hpy188III	TCNNGA	4 cut(s)	227, 242, 362, 374
Hpy8I	GTNNAC	3 cut(s)	50, 216, 389
HpyAV	CCTTC	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	187, 262
HpyF3I	CTNAG	1 cut(s)	106
Hsp92II	CATG	2 cut(s)	230, 292
Kzo9I	GATC	2 cut(s)	195, 223
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	1 cut(s)	442
LpnPI	CCDG	3 cut(s)	161, 247, 389
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	2 cut(s)	174, 362
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	197, 225
MboI	GATC	2 cut(s)	195, 223
MboII	GAAGA	6 cut(s)	37, 84, 100, 133, 202, 377
MfeI	CAATTG	2 cut(s)	266, 431
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	5 cut(s)	167, 252, 266, 345, 431
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	1 cut(s)	146
MroXI	GAANNNNTTC	2 cut(s)	349, 369
MunI	CAATTG	2 cut(s)	266, 431
NdeII	GATC	2 cut(s)	195, 223
NlaIII	CATG	2 cut(s)	230, 292
NmuCI	GTSAC	1 cut(s)	55
PagI	TCATGA	1 cut(s)	226
PciSI	GCTCTTC	1 cut(s)	360
PdmI	GAANNNNTTC	2 cut(s)	349, 369
PkrI	GCNGC	1 cut(s)	264
Ple19I	CGATCG	1 cut(s)	198
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
Psp124BI	GAGCTC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	412
PvuI	CGATCG	1 cut(s)	198
RsaI	GTAC	2 cut(s)	111, 215
RsaNI	GTAC	2 cut(s)	110, 214
SacI	GAGCTC	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	360
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	2 cut(s)	195, 223
Sau96I	GGNCC	1 cut(s)	412
ScaI	AGTACT	1 cut(s)	111
SchI	GAGTC	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	7 cut(s)	97, 105, 179, 333, 372, 414, 471
SfaNI	GCATC	1 cut(s)	109
SinI	GGWCC	1 cut(s)	412
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	5 cut(s)	167, 252, 266, 345, 431
SsiI	CCGC	2 cut(s)	208, 325
SspMI	CTAG	2 cut(s)	174, 362
SstI	GAGCTC	1 cut(s)	105
TaqI	TCGA	2 cut(s)	198, 381
TasI	AATT	5 cut(s)	167, 252, 266, 345, 431
TatI	WGTACW	2 cut(s)	109, 213
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	38, 180, 243
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	2 cut(s)	167, 252
XbaI	TCTAGA	1 cut(s)	361
XmiI	GTMKAC	1 cut(s)	49
XmnI	GAANNNNTTC	2 cut(s)	349, 369
XspI	CTAG	2 cut(s)	174, 362
ZrmI	AGTACT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.