Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Forward (+)

4250008 .. 4254971

Gene Structure 4964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026615

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAGAATAATGGAAGGAAGGAGATGGTGAGACGGAAGATTGAGATGAAAAGAATCGAAAATGCGACAAGGAGGCAGGTAACCTTTTCGAAACGTCGAAACGGGCTGTTGAAGAAGGCTTATGAACTTTCGGTTCTTTGCGATGCAGAAGTTGCAGTCATCGTCTTTTCTCAGAAAAACAGGCTCTACGAGTTTTCCAGCTCCAACATGCAAAAGACTATAAAACAATACCATAAACATGCAAAAGGTGCGCTAACCAACACTACTGAAGTGGAACAGTATATGCAGCAATTGAAGCATGAATCAGCTGACATGACCAAGAAGATCGAGATCCTAGAAGCTTCTCAACGGAGGCTTTTGGGACATGACTTGGATTCTTGCTCCGCTCAAGAACTCAATCAGATCAGTAGCCAGCTCGAGCGAAGCTTGCGCATTGTACGAGAGAGAAAGGCTCAGCTATTCATGGAGCAGATAGAACGAGTAAAAGCAAAGGAGAGGCTTCTCTTAGGAGCGAATGCAAAACTACACACAAAGTGTGGTGCAAGGCCTTGTCAGAAACCTTTAGTTCAAGAAAAAGGAGTTGGGGCGGCAAGTTGTAACTGGATGGAAAGTAGTCCAAGTAGCCGCAGCCAAACAATTAGTAATTCAGATCAGAAGACCAGAAGTATTCTAATATTCTATAGCCTGACCTCGTTCAACGGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

236

Amino Acids

26.99

Weight (kDa)

9.82

Isoelectric Point (pI)

56.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	18 - 65	6.8e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	94 - 179	1.4e-22	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	431
Acc36I	ACCTGC	1 cut(s)	67
AccBSI	CCGCTC	1 cut(s)	386
AciI	CCGC	3 cut(s)	384, 587, 625
AclWI	GGATC	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	288
AdeI	CACNNNGTG	1 cut(s)	534
AfaI	GTAC	1 cut(s)	438
AgsI	TTSAA	4 cut(s)	112, 295, 569, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AluBI	AGCT	6 cut(s)	201, 308, 341, 415, 426, 457
AluI	AGCT	6 cut(s)	201, 308, 341, 415, 426, 457
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	1 cut(s)	325
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	1 cut(s)	545
ApeKI	GCWGC	2 cut(s)	286, 627
AspLEI	GCGC	2 cut(s)	253, 432
AsuHPI	GGTGA	1 cut(s)	40
AsuII	TTCGAA	1 cut(s)	89
AvaI	CYCGRG	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	662
BbvI	GCAGC	2 cut(s)	298, 639
BccI	CCATC	2 cut(s)	19, 598
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	679
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	4 cut(s)	287, 588, 625, 628
BlpI	GCTNAGC	1 cut(s)	453
BlsI	GCNGC	4 cut(s)	288, 589, 626, 629
BmeT110I	CYCGRG	1 cut(s)	416
BmsI	GCATC	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	662
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
Bpu1102I	GCTNAGC	1 cut(s)	453
Bpu14I	TTCGAA	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	605
Bse8I	GATNNNNATC	1 cut(s)	329
BseGI	GGATG	1 cut(s)	609
BseJI	GATNNNNATC	1 cut(s)	329
BseMII	CTCAG	2 cut(s)	185, 467
BseNI	ACTGG	1 cut(s)	605
BseXI	GCAGC	2 cut(s)	298, 639
BshFI	GGCC	1 cut(s)	547
BsiHKCI	CYCGRG	1 cut(s)	416
BslFI	GGGAC	1 cut(s)	375
BsmAI	GTCTC	1 cut(s)	25
BsmBI	CGTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	375
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	1 cut(s)	547
BsoBI	CYCGRG	1 cut(s)	416
Bsp119I	TTCGAA	1 cut(s)	89
Bsp143I	GATC	4 cut(s)	324, 330, 402, 649
Bsp1720I	GCTNAGC	1 cut(s)	453
BspACI	CCGC	3 cut(s)	384, 587, 625
BspANI	GGCC	1 cut(s)	547
BspCNI	CTCAG	2 cut(s)	184, 466
BspMI	ACCTGC	1 cut(s)	67
BspPI	GGATC	1 cut(s)	325
BspT104I	TTCGAA	1 cut(s)	89
BsrBI	CCGCTC	1 cut(s)	386
BsrI	ACTGG	1 cut(s)	605
BssMI	GATC	4 cut(s)	324, 330, 402, 649
Bst4CI	ACNGT	1 cut(s)	279
BstAPI	GCANNNNNTGC	2 cut(s)	152, 248
BstBI	TTCGAA	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	413, 428
BstDEI	CTNAG	3 cut(s)	171, 453, 505
BstEII	GGTNACC	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	609
BstHHI	GCGC	2 cut(s)	253, 432
BstKTI	GATC	4 cut(s)	327, 333, 405, 652
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	4 cut(s)	324, 330, 402, 649
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 248, 295, 427
BstNSI	RCATGY	2 cut(s)	211, 242
BstPI	GGTNACC	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	679
BstV1I	GCAGC	2 cut(s)	298, 639
BstV2I	GAAGAC	1 cut(s)	662
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	547
BtgZI	GCGATG	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	609
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	2 cut(s)	413, 428
CfoI	GCGC	2 cut(s)	253, 432
Csp6I	GTAC	1 cut(s)	437
CviAII	CATG	6 cut(s)	208, 239, 299, 313, 365, 463
CviQI	GTAC	1 cut(s)	437
DdeI	CTNAG	3 cut(s)	171, 453, 505
DpnI	GATC	4 cut(s)	326, 332, 404, 651
DpnII	GATC	4 cut(s)	324, 330, 402, 649
DraIII	CACNNNGTG	1 cut(s)	534
Eco147I	AGGCCT	1 cut(s)	547
Eco57I	CTGAAG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	416
Eco91I	GGTNACC	1 cut(s)	79
EcoO65I	GGTNACC	1 cut(s)	79
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	6 cut(s)	211, 242, 302, 316, 368, 466
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	6 cut(s)	207, 238, 298, 312, 364, 462
Fnu4HI	GCNGC	4 cut(s)	287, 588, 625, 628
FokI	GGATG	1 cut(s)	616
Fsp4HI	GCNGC	4 cut(s)	287, 588, 625, 628
FspBI	CTAG	1 cut(s)	335
FspI	TGCGCA	1 cut(s)	431
GlaI	GCGC	2 cut(s)	252, 431
GluI	GCNGC	4 cut(s)	287, 588, 625, 628
HaeIII	GGCC	1 cut(s)	547
HhaI	GCGC	2 cut(s)	253, 432
Hin1II	CATG	6 cut(s)	211, 242, 302, 316, 368, 466
Hin6I	GCGC	2 cut(s)	251, 430
HinP1I	GCGC	2 cut(s)	251, 430
HindIII	AAGCTT	2 cut(s)	339, 424
HinfI	GANTC	3 cut(s)	54, 302, 374
HphI	GGTGA	1 cut(s)	40
Hpy188I	TCNGA	5 cut(s)	174, 402, 555, 649, 654
Hpy188III	TCNNGA	3 cut(s)	328, 389, 569
Hpy99I	CGWCG	1 cut(s)	99
HpyAV	CCTTC	3 cut(s)	9, 13, 109
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	7 cut(s)	146, 155, 211, 242, 286, 518, 542
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 248, 295, 427
HpyF3I	CTNAG	3 cut(s)	171, 453, 505
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	6 cut(s)	211, 242, 302, 316, 368, 466
HspAI	GCGC	2 cut(s)	251, 430
Kzo9I	GATC	4 cut(s)	324, 330, 402, 649
LmnI	GCTCC	4 cut(s)	206, 386, 466, 509
LpnPI	CCDG	7 cut(s)	62, 166, 211, 425, 586, 673, 698
Lsp1109I	GCAGC	2 cut(s)	298, 639
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	2 cut(s)	79, 596
MalI	GATC	4 cut(s)	326, 332, 404, 651
MbiI	CCGCTC	1 cut(s)	386
MboI	GATC	4 cut(s)	324, 330, 402, 649
MboII	GAAGA	4 cut(s)	49, 124, 334, 667
MfeI	CAATTG	1 cut(s)	290
MflI	RGATCY	1 cut(s)	330
MluCI	AATT	3 cut(s)	290, 636, 643
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	4 cut(s)	66, 345, 489, 700
MslI	CAYNNNNRTG	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	308
MunI	CAATTG	1 cut(s)	290
Mva1269I	GAATGC	1 cut(s)	520
MwoI	GCNNNNNNNGC	4 cut(s)	152, 248, 295, 427
NdeII	GATC	4 cut(s)	324, 330, 402, 649
NlaIII	CATG	6 cut(s)	211, 242, 302, 316, 368, 466
NsbI	TGCGCA	1 cut(s)	431
NspI	RCATGY	2 cut(s)	211, 242
NspV	TTCGAA	1 cut(s)	89
PaeR7I	CTCGAG	1 cut(s)	416
PceI	AGGCCT	1 cut(s)	547
PctI	GAATGC	1 cut(s)	520
PfeI	GAWTC	3 cut(s)	54, 302, 374
PkrI	GCNGC	4 cut(s)	288, 589, 626, 629
PspEI	GGTNACC	1 cut(s)	79
PspXI	VCTCGAGB	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	330
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
RseI	CAYNNNNRTG	1 cut(s)	237
SatI	GCNGC	4 cut(s)	287, 588, 625, 628
Sau3AI	GATC	4 cut(s)	324, 330, 402, 649
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	1 cut(s)	679
Sfr274I	CTCGAG	1 cut(s)	416
SfuI	TTCGAA	1 cut(s)	89
SlaI	CTCGAG	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	2 cut(s)	387, 416
SmoI	CTYRAG	2 cut(s)	387, 416
Sse9I	AATT	3 cut(s)	290, 636, 643
SseBI	AGGCCT	1 cut(s)	547
SsiI	CCGC	3 cut(s)	384, 587, 625
SspI	AATATT	1 cut(s)	675
SspMI	CTAG	1 cut(s)	335
StuI	AGGCCT	1 cut(s)	547
TaaI	ACNGT	1 cut(s)	279
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	5 cut(s)	57, 89, 97, 327, 417
TasI	AATT	3 cut(s)	290, 636, 643
TauI	GCSGC	2 cut(s)	590, 627
TfiI	GAWTC	3 cut(s)	54, 302, 374
TseI	GCWGC	2 cut(s)	286, 627
TspDTI	ATGAA	4 cut(s)	62, 138, 315, 451
TspGWI	ACGGA	2 cut(s)	49, 364
XceI	RCATGY	2 cut(s)	211, 242
XhoI	CTCGAG	1 cut(s)	416
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.