Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Reverse (-)

713271 .. 714617

Gene Structure 1347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1004600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGAGCAGCTGGAACAACTTAAGGCAAAGGAGAGGTTCCTGTTACAAGAGAATGCGCAGTTATGTGAAGAGTGTGGTGCAAAGCCGTTGATGGAGTTTTCAGCTCAAAAAGAAAGAGCGTTTGCTCCTGTAAGCTGTGAAAAAGCCGGAGCTTGCTTCTGCTTCTGTAAACTACAGGGGCCGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

63

Amino Acids

6.99

Weight (kDa)

6.22

Isoelectric Point (pI)

53.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	57
AflII	CTTAAG	1 cut(s)	20
AluBI	AGCT	4 cut(s)	10, 104, 135, 152
AluI	AGCT	4 cut(s)	10, 104, 135, 152
AoxI	GGCC	1 cut(s)	179
ApeKI	GCWGC	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	1 cut(s)	85
BceAI	ACGGC	1 cut(s)	70
BfmI	CTRYAG	1 cut(s)	173
BfrI	CTTAAG	1 cut(s)	20
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	2 cut(s)	38, 180
BseXI	GCAGC	1 cut(s)	19
BshFI	GGCC	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	147
BsmI	GAATGC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	181
BspANI	GGCC	1 cut(s)	181
BspLI	GGNNCC	2 cut(s)	38, 180
BspTI	CTTAAG	1 cut(s)	20
Bst6I	CTCTTC	1 cut(s)	63
BstAFI	CTTAAG	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	154
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	179
CviJI	RGCY	7 cut(s)	10, 85, 104, 135, 146, 152, 181
CviKI_1	RGCY	7 cut(s)	10, 85, 104, 135, 146, 152, 181
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
FaiI	YATR	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	8
FspI	TGCGCA	1 cut(s)	57
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	181
HapII	CCGG	1 cut(s)	147
HhaI	GCGC	1 cut(s)	58
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	147
Hpy166II	GTNNAC	1 cut(s)	170
Hpy8I	GTNNAC	1 cut(s)	170
HpyCH4V	TGCA	1 cut(s)	80
HspAI	GCGC	1 cut(s)	56
LmnI	GCTCC	3 cut(s)	4, 130, 149
LpnPI	CCDG	4 cut(s)	53, 141, 160, 161
Lsp1109I	GCAGC	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	42
MboII	GAAGA	1 cut(s)	80
MnlI	CCTC	1 cut(s)	27
MseI	TTAA	1 cut(s)	21
MspA1I	CMGCKG	1 cut(s)	10
MspCI	CTTAAG	1 cut(s)	20
MspI	CCGG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	58
NlaIV	GGNNCC	2 cut(s)	38, 180
NsbI	TGCGCA	1 cut(s)	57
PctI	GAATGC	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	9
PspN4I	GGNNCC	2 cut(s)	38, 180
PspPI	GGNCC	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	1 cut(s)	8
Sau96I	GGNCC	1 cut(s)	179
SetI	ASST	5 cut(s)	12, 38, 106, 137, 154
SfcI	CTRYAG	1 cut(s)	173
SgeI	CNNG	6 cut(s)	23, 52, 59, 140, 159, 165
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TseI	GCWGC	1 cut(s)	7
Vha464I	CTTAAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.