Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Reverse (-)

50094027 .. 50100120

Gene Structure 6094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG370400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGAAGCTGGTATTGATGAATATGGAAATAAAGGTTTGTGTGGCCTCAGAATAAAGAGGAGGCTTTTGGGACATGACTTAGATTCTTGCTCTGCTCAAGAACTCAATCAGATCAGTAGCCAGCTCGAGCGAAGCTTGTGCATTGTACGAGAGAGAAAGTTTTGTGGTGCTTCAGTTCTGATACCATCTATCATAATTTGTGCCCTAAAACCAGGGGAGGCTCCTCTTAGAAGAGAATGTAAAACTACACACAGAGGTGAGTCAATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

90

Amino Acids

9.92

Weight (kDa)

8.63

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	19 - 53	1e-08	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	211
AleI	CACNNNNGTG	1 cut(s)	255
AluBI	AGCT	3 cut(s)	8, 124, 135
AluI	AGCT	3 cut(s)	8, 124, 135
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	205
BccI	CCATC	1 cut(s)	193
BcgI	CGANNNNNNTGC	2 cut(s)	120, 154
BciT130I	CCWGG	1 cut(s)	213
Bme1390I	CCNGG	1 cut(s)	213
BmeT110I	CYCGRG	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	61
BseRI	GAGGAG	2 cut(s)	73, 213
BseSI	GKGCMC	1 cut(s)	205
BshFI	GGCC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	45
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	111
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	3 cut(s)	47, 79, 227
BstKTI	GATC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	111
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	211
BstSLI	GKGCMC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	7 cut(s)	8, 45, 64, 120, 124, 135, 221
CviKI_1	RGCY	7 cut(s)	8, 45, 64, 120, 124, 135, 221
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	3 cut(s)	47, 79, 227
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	211
FaeI	CATG	1 cut(s)	77
FaiI	YATR	3 cut(s)	24, 75, 194
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	77
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	2 cut(s)	83, 260
HphI	GGTGA	1 cut(s)	269
Hpy188I	TCNGA	3 cut(s)	50, 111, 180
Hpy188III	TCNNGA	1 cut(s)	98
HpyCH4V	TGCA	1 cut(s)	141
HpyF3I	CTNAG	3 cut(s)	47, 79, 227
Hsp92II	CATG	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	3 cut(s)	134, 198, 225
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	1 cut(s)	243
MfeI	CAATTG	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	2 cut(s)	195, 264
MlyI	GAGTC	1 cut(s)	269
MnlI	CCTC	6 cut(s)	51, 54, 56, 211, 234, 248
MseI	TTAA	1 cut(s)	271
MslI	CAYNNNNRTG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	213
MunI	CAATTG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	213
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	1 cut(s)	222
OliI	CACNNNNGTG	1 cut(s)	255
PaeR7I	CTCGAG	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	83
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	222
PspXI	VCTCGAGB	1 cut(s)	125
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	271
Sau3AI	GATC	1 cut(s)	111
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	5 cut(s)	10, 37, 126, 137, 259
Sfr274I	CTCGAG	1 cut(s)	125
SlaI	CTCGAG	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	2 cut(s)	96, 125
SmoI	CTYRAG	2 cut(s)	96, 125
Sse9I	AATT	2 cut(s)	195, 264
StyD4I	CCNGG	1 cut(s)	211
TaqI	TCGA	1 cut(s)	126
TasI	AATT	2 cut(s)	195, 264
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	271
Tru9I	TTAA	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	33
XhoI	CTCGAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.