Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Reverse (-)

50057802 .. 50058538

Gene Structure 737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG370100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCCAAGAAGATCGAGACCCTAGAAGCTTCTCAACGGAGGCTTTTGGGACATGACTTGGATCCTTGCTCTGCTGAAGAAGTCAATCAGATGAGTAGCCAGATCGAGCGAAGCTTGCGCATTGTACGAGAGAGAAAGGATCAGCTATTCACGGAGCAGATAGAACGACTAAAAGCAAAGGAGAGGCTCCTCTTAGAAGAGAATGCAAAACTACACACAGAGTGTGGTGCAAGGCCTTGTCAGAAACCTTTAGTTCAAGAAAAAGGAGTTGGGGCAGCAAGTTATAACTGGATGGATAGTAGTCAAAGTAGCAGCAGCCAAACAATTAATAATTCAGATCAGGTAGAGACTAGATTGTTCATCGGACCGCCAGTGATGCGCTGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

129

Amino Acids

14.7

Weight (kDa)

6.17

Isoelectric Point (pI)

62.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	1 - 74	7.5e-21	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	285
Acc16I	TGCGCA	1 cut(s)	119
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	3 cut(s)	56, 69, 147
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	96
AdeI	CACNNNGTG	1 cut(s)	222
AfaI	GTAC	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	257
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AluBI	AGCT	3 cut(s)	29, 114, 145
AluI	AGCT	3 cut(s)	29, 114, 145
Alw26I	GTCTC	2 cut(s)	11, 341
AlwI	GGATC	3 cut(s)	56, 69, 147
AoxI	GGCC	2 cut(s)	3, 233
ApeKI	GCWGC	3 cut(s)	275, 312, 315
AseI	ATTAAT	1 cut(s)	327
AspLEI	GCGC	2 cut(s)	120, 381
AspS9I	GGNCC	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	61
BbvI	GCAGC	3 cut(s)	287, 324, 327
BccI	CCATC	1 cut(s)	286
BcoDI	GTCTC	2 cut(s)	11, 341
BfaI	CTAG	2 cut(s)	23, 351
BisI	GCNGC	3 cut(s)	276, 313, 316
BlsI	GCNGC	3 cut(s)	277, 314, 317
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	2 cut(s)	63, 188
BmsI	GCATC	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	11
Bse1I	ACTGG	2 cut(s)	293, 371
BseGI	GGATG	1 cut(s)	297
BseNI	ACTGG	2 cut(s)	293, 371
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	3 cut(s)	287, 324, 327
BshFI	GGCC	2 cut(s)	5, 235
BslFI	GGGAC	1 cut(s)	63
BsmAI	GTCTC	2 cut(s)	11, 341
BsmFI	GGGAC	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	2 cut(s)	5, 235
Bso31I	GGTCTC	1 cut(s)	11
Bsp143I	GATC	5 cut(s)	12, 61, 102, 139, 337
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	2 cut(s)	5, 235
BspLI	GGNNCC	2 cut(s)	63, 188
BspPI	GGATC	3 cut(s)	56, 69, 147
BspTNI	GGTCTC	1 cut(s)	11
BsrI	ACTGG	2 cut(s)	293, 371
BssMI	GATC	5 cut(s)	12, 61, 102, 139, 337
Bst6I	CTCTTC	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	297
BstHHI	GCGC	2 cut(s)	120, 381
BstKTI	GATC	5 cut(s)	15, 64, 105, 142, 340
BstMAI	GTCTC	2 cut(s)	11, 341
BstMBI	GATC	5 cut(s)	12, 61, 102, 139, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 376
BstV1I	GCAGC	3 cut(s)	287, 324, 327
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	2 cut(s)	5, 235
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	116
CfoI	GCGC	2 cut(s)	120, 381
Cfr13I	GGNCC	1 cut(s)	365
CpoI	CGGWCCG	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	125
CspI	CGGWCCG	1 cut(s)	365
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	9 cut(s)	5, 29, 43, 99, 114, 145, 187, 235, 318
CviKI_1	RGCY	9 cut(s)	5, 29, 43, 99, 114, 145, 187, 235, 318
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	1 cut(s)	193
DpnI	GATC	5 cut(s)	14, 63, 104, 141, 339
DpnII	GATC	5 cut(s)	12, 61, 102, 139, 337
DraIII	CACNNNGTG	1 cut(s)	222
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	235
Eco31I	GGTCTC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	96
FaeI	CATG	1 cut(s)	56
FaiI	YATR	2 cut(s)	54, 285
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	1 cut(s)	52
Fnu4HI	GCNGC	3 cut(s)	276, 313, 316
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	3 cut(s)	276, 313, 316
FspBI	CTAG	2 cut(s)	23, 351
FspI	TGCGCA	1 cut(s)	119
GlaI	GCGC	2 cut(s)	119, 380
GluI	GCNGC	3 cut(s)	276, 313, 316
HaeIII	GGCC	2 cut(s)	5, 235
HhaI	GCGC	2 cut(s)	120, 381
Hin1II	CATG	1 cut(s)	56
Hin6I	GCGC	2 cut(s)	118, 379
HinP1I	GCGC	2 cut(s)	118, 379
HindIII	AAGCTT	2 cut(s)	27, 112
Hpy188I	TCNGA	4 cut(s)	90, 243, 337, 365
Hpy188III	TCNNGA	2 cut(s)	16, 257
HpyCH4V	TGCA	2 cut(s)	206, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 376
HpyF3I	CTNAG	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	56
HspAI	GCGC	2 cut(s)	118, 379
Kzo9I	GATC	5 cut(s)	12, 61, 102, 139, 337
LmnI	GCTCC	2 cut(s)	154, 192
LpnPI	CCDG	4 cut(s)	113, 274, 326, 384
Lsp1109I	GCAGC	3 cut(s)	287, 324, 327
LweI	GCATC	1 cut(s)	366
MaeI	CTAG	2 cut(s)	23, 351
MalI	GATC	5 cut(s)	14, 63, 104, 141, 339
MboI	GATC	5 cut(s)	12, 61, 102, 139, 337
MboII	GAAGA	3 cut(s)	22, 89, 209
MflI	RGATCY	1 cut(s)	61
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	324, 331
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	33, 177, 200
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	327
Msp20I	TGGCCA	1 cut(s)	5
Mva1269I	GAATGC	1 cut(s)	208
MwoI	GCNNNNNNNGC	2 cut(s)	115, 376
NdeII	GATC	5 cut(s)	12, 61, 102, 139, 337
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	2 cut(s)	63, 188
NsbI	TGCGCA	1 cut(s)	119
PceI	AGGCCT	1 cut(s)	235
PctI	GAATGC	1 cut(s)	208
PkrI	GCNGC	3 cut(s)	277, 314, 317
PshBI	ATTAAT	1 cut(s)	327
PsiI	TTATAA	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	63, 188
PspPI	GGNCC	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
Rsr2I	CGGWCCG	1 cut(s)	365
RsrII	CGGWCCG	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	3 cut(s)	276, 313, 316
Sau3AI	GATC	5 cut(s)	12, 61, 102, 139, 337
Sau96I	GGNCC	1 cut(s)	365
SetI	ASST	5 cut(s)	31, 116, 147, 250, 345
SfaNI	GCATC	1 cut(s)	366
SinI	GGWCC	1 cut(s)	365
Sse9I	AATT	2 cut(s)	324, 331
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	1 cut(s)	368
SspMI	CTAG	2 cut(s)	23, 351
StuI	AGGCCT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	15, 105
TasI	AATT	2 cut(s)	324, 331
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	1 cut(s)	378
TseI	GCWGC	3 cut(s)	275, 312, 315
TspDTI	ATGAA	1 cut(s)	349
TspGWI	ACGGA	2 cut(s)	52, 167
TspRI	CASTG	1 cut(s)	378
VpaK11BI	GGWCC	1 cut(s)	365
VspI	ATTAAT	1 cut(s)	327
XspI	CTAG	2 cut(s)	23, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.