Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Reverse (-)

61965775 .. 61968891

Gene Structure 3117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG399900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCAGCAATTGAAGCATGAATCAGCTGACATGGCCAAGAAGATCGAGACCCTAGAAGCTTCTCAACGGAGGCTTTTGGGACATGACTTGGATCCTTGCTCTGCTGAAGAAGTCAATCAGATGAGTAGCCAGATCGAGCGAAGCTTGCGCATTGTACGAGAGAGAAAGGATCAGCTATTCACGGAGCAGATAGAACGACTAAAAGCAAAGGAGAGGCTCCTCTTAGAAGAGAATGCAAAACTACACACAGAGTGTGGTGCAAGGCCTTGTCAGAAACCTTTAGTTCAAGAAAAAGGAGTTGGGGCAGCAAGTTATAACTGGATGGATAGTAGTCAAAGTAGCAGCAGCCAAACAATTAATAATTCAGATCAGGTAGAGACTAGATTGTTCATCGGACCGCCAGTGATGCGCTGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

139

Amino Acids

15.87

Weight (kDa)

5.98

Isoelectric Point (pI)

59.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	2 - 84	9.9e-23	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	315
Acc16I	TGCGCA	1 cut(s)	149
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	3 cut(s)	86, 99, 177
AcoI	YGGCCR	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	126
AdeI	CACNNNGTG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	156
AgsI	TTSAA	2 cut(s)	13, 287
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AluBI	AGCT	4 cut(s)	26, 59, 144, 175
AluI	AGCT	4 cut(s)	26, 59, 144, 175
Alw26I	GTCTC	2 cut(s)	41, 371
AlwI	GGATC	3 cut(s)	86, 99, 177
AoxI	GGCC	2 cut(s)	33, 263
ApeKI	GCWGC	4 cut(s)	4, 305, 342, 345
AseI	ATTAAT	1 cut(s)	357
AspLEI	GCGC	2 cut(s)	150, 411
AspS9I	GGNCC	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	395
BalI	TGGCCA	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	91
BbvI	GCAGC	4 cut(s)	16, 317, 354, 357
BccI	CCATC	1 cut(s)	316
BcoDI	GTCTC	2 cut(s)	41, 371
BfaI	CTAG	2 cut(s)	53, 381
BisI	GCNGC	4 cut(s)	5, 306, 343, 346
BlsI	GCNGC	4 cut(s)	6, 307, 344, 347
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	2 cut(s)	93, 218
BmsI	GCATC	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	323, 401
BseGI	GGATG	1 cut(s)	327
BseNI	ACTGG	2 cut(s)	323, 401
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	4 cut(s)	16, 317, 354, 357
BshFI	GGCC	2 cut(s)	35, 265
BslFI	GGGAC	1 cut(s)	93
BsmAI	GTCTC	2 cut(s)	41, 371
BsmFI	GGGAC	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	35, 265
Bso31I	GGTCTC	1 cut(s)	41
Bsp143I	GATC	5 cut(s)	42, 91, 132, 169, 367
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	2 cut(s)	35, 265
BspLI	GGNNCC	2 cut(s)	93, 218
BspPI	GGATC	3 cut(s)	86, 99, 177
BspTNI	GGTCTC	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	323, 401
BssMI	GATC	5 cut(s)	42, 91, 132, 169, 367
Bst6I	CTCTTC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	327
BstHHI	GCGC	2 cut(s)	150, 411
BstKTI	GATC	5 cut(s)	45, 94, 135, 172, 370
BstMAI	GTCTC	2 cut(s)	41, 371
BstMBI	GATC	5 cut(s)	42, 91, 132, 169, 367
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 32, 145, 406
BstV1I	GCAGC	4 cut(s)	16, 317, 354, 357
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	2 cut(s)	35, 265
BtsCI	GGATG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	146
CfoI	GCGC	2 cut(s)	150, 411
Cfr13I	GGNCC	1 cut(s)	395
CpoI	CGGWCCG	1 cut(s)	395
Csp6I	GTAC	1 cut(s)	155
CspI	CGGWCCG	1 cut(s)	395
CviAII	CATG	3 cut(s)	17, 31, 83
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	1 cut(s)	223
DpnI	GATC	5 cut(s)	44, 93, 134, 171, 369
DpnII	GATC	5 cut(s)	42, 91, 132, 169, 367
DraIII	CACNNNGTG	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco147I	AGGCCT	1 cut(s)	265
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	126
FaeI	CATG	3 cut(s)	20, 34, 86
FaiI	YATR	4 cut(s)	18, 32, 84, 315
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	3 cut(s)	16, 30, 82
Fnu4HI	GCNGC	4 cut(s)	5, 306, 343, 346
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	4 cut(s)	5, 306, 343, 346
FspBI	CTAG	2 cut(s)	53, 381
FspI	TGCGCA	1 cut(s)	149
GlaI	GCGC	2 cut(s)	149, 410
GluI	GCNGC	4 cut(s)	5, 306, 343, 346
HaeIII	GGCC	2 cut(s)	35, 265
HhaI	GCGC	2 cut(s)	150, 411
Hin1II	CATG	3 cut(s)	20, 34, 86
Hin6I	GCGC	2 cut(s)	148, 409
HinP1I	GCGC	2 cut(s)	148, 409
HindIII	AAGCTT	2 cut(s)	57, 142
HinfI	GANTC	1 cut(s)	20
Hpy188I	TCNGA	4 cut(s)	120, 273, 367, 395
Hpy188III	TCNNGA	2 cut(s)	46, 287
HpyCH4V	TGCA	3 cut(s)	4, 236, 260
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 32, 145, 406
HpyF3I	CTNAG	1 cut(s)	223
Hsp92II	CATG	3 cut(s)	20, 34, 86
HspAI	GCGC	2 cut(s)	148, 409
Kzo9I	GATC	5 cut(s)	42, 91, 132, 169, 367
LmnI	GCTCC	2 cut(s)	184, 222
LpnPI	CCDG	4 cut(s)	143, 304, 356, 414
Lsp1109I	GCAGC	4 cut(s)	16, 317, 354, 357
LweI	GCATC	1 cut(s)	396
MaeI	CTAG	2 cut(s)	53, 381
MalI	GATC	5 cut(s)	44, 93, 134, 171, 369
MboI	GATC	5 cut(s)	42, 91, 132, 169, 367
MboII	GAAGA	3 cut(s)	52, 119, 239
MfeI	CAATTG	1 cut(s)	8
MflI	RGATCY	1 cut(s)	91
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	3 cut(s)	8, 354, 361
MluNI	TGGCCA	1 cut(s)	35
MnlI	CCTC	3 cut(s)	63, 207, 230
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	1 cut(s)	357
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	26
MunI	CAATTG	1 cut(s)	8
Mva1269I	GAATGC	1 cut(s)	238
MwoI	GCNNNNNNNGC	4 cut(s)	13, 32, 145, 406
NdeII	GATC	5 cut(s)	42, 91, 132, 169, 367
NlaIII	CATG	3 cut(s)	20, 34, 86
NlaIV	GGNNCC	2 cut(s)	93, 218
NsbI	TGCGCA	1 cut(s)	149
PceI	AGGCCT	1 cut(s)	265
PctI	GAATGC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	4 cut(s)	6, 307, 344, 347
PshBI	ATTAAT	1 cut(s)	357
PsiI	TTATAA	1 cut(s)	315
PspN4I	GGNNCC	2 cut(s)	93, 218
PspPI	GGNCC	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
Rsr2I	CGGWCCG	1 cut(s)	395
RsrII	CGGWCCG	1 cut(s)	395
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	4 cut(s)	5, 306, 343, 346
Sau3AI	GATC	5 cut(s)	42, 91, 132, 169, 367
Sau96I	GGNCC	1 cut(s)	395
SetI	ASST	6 cut(s)	28, 61, 146, 177, 280, 375
SfaNI	GCATC	1 cut(s)	396
SinI	GGWCC	1 cut(s)	395
Sse9I	AATT	3 cut(s)	8, 354, 361
SseBI	AGGCCT	1 cut(s)	265
SsiI	CCGC	1 cut(s)	398
SspMI	CTAG	2 cut(s)	53, 381
StuI	AGGCCT	1 cut(s)	265
TaqI	TCGA	2 cut(s)	45, 135
TasI	AATT	3 cut(s)	8, 354, 361
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	1 cut(s)	408
TseI	GCWGC	4 cut(s)	4, 305, 342, 345
TspDTI	ATGAA	2 cut(s)	33, 379
TspGWI	ACGGA	2 cut(s)	82, 197
TspRI	CASTG	1 cut(s)	408
VpaK11BI	GGWCC	1 cut(s)	395
VspI	ATTAAT	1 cut(s)	357
XspI	CTAG	2 cut(s)	53, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.