Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Reverse (-)

63530826 .. 63535717

Gene Structure 4892 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59992

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTGAGAGGGAAGATTGAGATGAAAAGAATCGAAAATGCGACAAGGAGGCAGGTAACCTTTTCGAAACGTCGAAACGGGCTTTTGAAGAAGGCTTATGAGCTTTCGGTTCTTTGCGATGCAGAAGTCGCAGTCATCGTCTTTTCTCAAAAAAACAGGCTCTACGAGTTTTCCAGCTCTAACATGCAAAAGACTATAAAACAATACCATAAACATGCAAAAGGTGCGCTAACCAAAACTACTGAAGTGGAACAGTATATGCAGCAATTGAAGCATGAATCAGCTGACATGACCAAGAAGATCGAGATCCTAGAAGCTTCTCAACGGAGGCTTTTGGGACATGACTTGGATTCTTGCTCTGCTCAAGAACTAAATCAGATCAGTAGCCAGCTCGACCGTAGCTTGCGCATTGTACGAGAGAGAAAGGCTCAGCTATTCATGGAGCAGATAGAACGAGTAAAAGCAAAGGAGAGGCTTCTCTTAGGAGAGAATGCAAAACTACACACCAAGTGTGGTTCAAGGCCTTGTCAGAAACCAATAGTTCAAGAAAAAGGAGTTGGGGAGGCAAGTTGTAACTGGATGAATAGTAGTCCAAGTAGCCGCAGCCAAACAATTAGTAATTCAGATCAGGTAGAGACTAGATTGTTCATCGGACCTCCAGTGATGCGTTGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

225

Amino Acids

25.84

Weight (kDa)

9.67

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	6.3e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	86 - 171	8.4e-23	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	43
AciI	CCGC	1 cut(s)	601
AclWI	GGATC	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	264
AdeI	CACNNNGTG	1 cut(s)	510
AfaI	GTAC	1 cut(s)	414
AgsI	TTSAA	4 cut(s)	88, 271, 519, 545
AjuI	GAANNNNNNNTTGG	2 cut(s)	540, 572
AluBI	AGCT	7 cut(s)	103, 177, 284, 317, 391, 402, 433
AluI	AGCT	7 cut(s)	103, 177, 284, 317, 391, 402, 433
Alw26I	GTCTC	1 cut(s)	629
AlwI	GGATC	1 cut(s)	301
AoxI	GGCC	1 cut(s)	521
ApeKI	GCWGC	2 cut(s)	262, 603
AspLEI	GCGC	2 cut(s)	229, 408
AspS9I	GGNCC	1 cut(s)	653
AsuHPI	GGTGA	1 cut(s)	16
AsuII	TTCGAA	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	653
BbvI	GCAGC	2 cut(s)	274, 615
BcoDI	GTCTC	1 cut(s)	629
BfaI	CTAG	2 cut(s)	311, 639
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	3 cut(s)	263, 601, 604
BlpI	GCTNAGC	1 cut(s)	429
BlsI	GCNGC	3 cut(s)	264, 602, 605
Bme18I	GGWCC	1 cut(s)	653
BmgT120I	GGNCC	1 cut(s)	653
BmsI	GCATC	2 cut(s)	109, 654
BplI	GAGNNNNNCTC	2 cut(s)	412, 444
BpmI	CTGGAG	1 cut(s)	642
Bpu1102I	GCTNAGC	1 cut(s)	429
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	581, 659
Bse8I	GATNNNNATC	1 cut(s)	305
BseGI	GGATG	1 cut(s)	585
BseJI	GATNNNNATC	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	2 cut(s)	581, 659
BseXI	GCAGC	2 cut(s)	274, 615
Bsh1285I	CGRYCG	1 cut(s)	397
BshFI	GGCC	1 cut(s)	523
BsiEI	CGRYCG	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	351
BsmAI	GTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	351
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	1 cut(s)	523
Bsp119I	TTCGAA	1 cut(s)	65
Bsp143I	GATC	4 cut(s)	300, 306, 378, 625
Bsp1720I	GCTNAGC	1 cut(s)	429
BspACI	CCGC	1 cut(s)	601
BspANI	GGCC	1 cut(s)	523
BspCNI	CTCAG	1 cut(s)	442
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	301
BspT104I	TTCGAA	1 cut(s)	65
BsrI	ACTGG	2 cut(s)	581, 659
BssMI	GATC	4 cut(s)	300, 306, 378, 625
Bst4CI	ACNGT	2 cut(s)	255, 398
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	389, 404
BstDEI	CTNAG	2 cut(s)	429, 481
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	585
BstHHI	GCGC	2 cut(s)	229, 408
BstKTI	GATC	4 cut(s)	303, 309, 381, 628
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	4 cut(s)	300, 306, 378, 625
BstMCI	CGRYCG	1 cut(s)	397
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 224, 271
BstNSI	RCATGY	2 cut(s)	187, 218
BstPI	GGTNACC	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	274, 615
BstX2I	RGATCY	1 cut(s)	306
BstYI	RGATCY	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	523
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	585
BtsIMutI	CAGTG	1 cut(s)	666
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	389, 404
CfoI	GCGC	2 cut(s)	229, 408
Cfr13I	GGNCC	1 cut(s)	653
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	6 cut(s)	184, 215, 275, 289, 341, 439
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	2 cut(s)	429, 481
DpnI	GATC	4 cut(s)	302, 308, 380, 627
DpnII	GATC	4 cut(s)	300, 306, 378, 625
DraIII	CACNNNGTG	1 cut(s)	510
Eco147I	AGGCCT	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	653
Eco57I	CTGAAG	1 cut(s)	264
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
FaeI	CATG	6 cut(s)	187, 218, 278, 292, 344, 442
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	6 cut(s)	183, 214, 274, 288, 340, 438
Fnu4HI	GCNGC	3 cut(s)	263, 601, 604
FokI	GGATG	1 cut(s)	592
Fsp4HI	GCNGC	3 cut(s)	263, 601, 604
FspBI	CTAG	2 cut(s)	311, 639
FspI	TGCGCA	1 cut(s)	407
GlaI	GCGC	2 cut(s)	228, 407
GluI	GCNGC	3 cut(s)	263, 601, 604
GsuI	CTGGAG	1 cut(s)	642
HaeIII	GGCC	1 cut(s)	523
HhaI	GCGC	2 cut(s)	229, 408
Hin1II	CATG	6 cut(s)	187, 218, 278, 292, 344, 442
Hin6I	GCGC	2 cut(s)	227, 406
HinP1I	GCGC	2 cut(s)	227, 406
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	3 cut(s)	30, 278, 350
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	4 cut(s)	378, 531, 625, 653
Hpy188III	TCNNGA	3 cut(s)	304, 365, 545
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	255, 398
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	5 cut(s)	122, 187, 218, 262, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 224, 271
HpyF3I	CTNAG	2 cut(s)	429, 481
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	6 cut(s)	187, 218, 278, 292, 344, 442
HspAI	GCGC	2 cut(s)	227, 406
Kzo9I	GATC	4 cut(s)	300, 306, 378, 625
LmnI	GCTCC	1 cut(s)	442
LpnPI	CCDG	7 cut(s)	38, 142, 187, 401, 562, 614, 672
Lsp1109I	GCAGC	2 cut(s)	274, 615
LweI	GCATC	2 cut(s)	109, 654
MaeI	CTAG	2 cut(s)	311, 639
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	2 cut(s)	55, 572
MalI	GATC	4 cut(s)	302, 308, 380, 627
MboI	GATC	4 cut(s)	300, 306, 378, 625
MboII	GAAGA	3 cut(s)	25, 100, 310
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	1 cut(s)	306
MluCI	AATT	3 cut(s)	266, 612, 619
MnlI	CCTC	5 cut(s)	42, 321, 465, 556, 666
MslI	CAYNNNNRTG	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	284
MunI	CAATTG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	496
MwoI	GCNNNNNNNGC	3 cut(s)	128, 224, 271
NdeII	GATC	4 cut(s)	300, 306, 378, 625
NlaIII	CATG	6 cut(s)	187, 218, 278, 292, 344, 442
NsbI	TGCGCA	1 cut(s)	407
NspI	RCATGY	2 cut(s)	187, 218
NspV	TTCGAA	1 cut(s)	65
PceI	AGGCCT	1 cut(s)	523
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	3 cut(s)	30, 278, 350
PkrI	GCNGC	3 cut(s)	264, 602, 605
PspEI	GGTNACC	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	653
PsuI	RGATCY	1 cut(s)	306
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	213
SatI	GCNGC	3 cut(s)	263, 601, 604
Sau3AI	GATC	4 cut(s)	300, 306, 378, 625
Sau96I	GGNCC	1 cut(s)	653
SfaNI	GCATC	2 cut(s)	109, 654
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	1 cut(s)	653
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
Sse9I	AATT	3 cut(s)	266, 612, 619
SseBI	AGGCCT	1 cut(s)	523
SsiI	CCGC	1 cut(s)	601
SspMI	CTAG	2 cut(s)	311, 639
StuI	AGGCCT	1 cut(s)	523
TaaI	ACNGT	2 cut(s)	255, 398
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	5 cut(s)	33, 65, 73, 303, 393
TasI	AATT	3 cut(s)	266, 612, 619
TauI	GCSGC	1 cut(s)	603
TfiI	GAWTC	3 cut(s)	30, 278, 350
TscAI	CASTG	1 cut(s)	666
TseI	GCWGC	2 cut(s)	262, 603
TspDTI	ATGAA	5 cut(s)	38, 291, 427, 596, 637
TspGWI	ACGGA	1 cut(s)	340
TspRI	CASTG	1 cut(s)	666
VpaK11BI	GGWCC	1 cut(s)	653
XceI	RCATGY	2 cut(s)	187, 218
XspI	CTAG	2 cut(s)	311, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.