Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Reverse (-)

21272360 .. 21276490

Gene Structure 4131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28740.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTGAGAGGGAAGATTGAGATGAAAAGAATTGAAAATGCGACAAGCAGGCAGGTAACCTTTTCTAAACGTCGAAACGGGCTGTTGAAGAAGGCTTATGAGCTTTCGGTTCTTTGCGATGCCGAAGTTGCGGTCATCGTCTTTTCTCAGAAGGGCAGGCTCTATGAGTTTTCCAGCTCTGACATGCAAAAGACTATAAAACGATACCATAAACATGCAAAAGGTGCGCAGACCAACACTACTGAAGTGGAACAGTATATGCAGCAATTGAAGCATGAATCAGCTGACATGGCCAAGAAGATTGAGATCCTAGAAGCTTCTCAACGGAGGCTTTTGGGACATGATTTAGATTCTTGCTCTGCTCAAGAACTCAATCAGATAAGTAGCCAGCTCGAGCGAAGCATACGCATTGTTCGAGATAGAAAGGGTCAGCTATTCATGGAACAAATAGAACGACTCCAAGCGAAGGAGAGGATCCTCTTAGAAGAGAATACAAAACTTCACATAGCGTGTGGTGCAAGGCCTTGGCAGCAACATATAGTTCAAGAAAAAGAAGTTGGGGCAGCAACTTATAACTGGATGAACAGTAGTCAAAGTAGCAGCAGCCAAACAATCAGTAATTCAGATCAGGTGGAGACTGGGTTGTTCATCGGACCACCAGCGATGCGCTGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

226

Amino Acids

25.8

Weight (kDa)

9.14

Isoelectric Point (pI)

58.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.4e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	86 - 168	3.7e-23	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
Acc16I	TGCGCA	1 cut(s)	228
Acc36I	ACCTGC	1 cut(s)	43
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	3 cut(s)	301, 469, 482
AcoI	YGGCCR	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	466
AgsI	TTSAA	4 cut(s)	35, 88, 271, 545
AjuI	GAANNNNNNNTTGG	2 cut(s)	540, 572
AluBI	AGCT	6 cut(s)	103, 177, 284, 317, 391, 433
AluI	AGCT	6 cut(s)	103, 177, 284, 317, 391, 433
Alw26I	GTCTC	1 cut(s)	629
AlwI	GGATC	3 cut(s)	301, 469, 482
Ama87I	CYCGRG	1 cut(s)	392
AoxI	GGCC	2 cut(s)	291, 521
ApeKI	GCWGC	5 cut(s)	262, 529, 563, 600, 603
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
AspLEI	GCGC	2 cut(s)	229, 669
AspS9I	GGNCC	1 cut(s)	653
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	653
BalI	TGGCCA	1 cut(s)	293
BamHI	GGATCC	1 cut(s)	474
BbvI	GCAGC	5 cut(s)	274, 541, 575, 612, 615
BcoDI	GTCTC	1 cut(s)	629
BfaI	CTAG	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	5 cut(s)	263, 530, 564, 601, 604
BlsI	GCNGC	5 cut(s)	264, 531, 565, 602, 605
Bme18I	GGWCC	1 cut(s)	653
BmeT110I	CYCGRG	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	653
BmiI	GGNNCC	1 cut(s)	476
BmrI	ACTGGG	1 cut(s)	648
BmsI	GCATC	2 cut(s)	109, 654
BmuI	ACTGGG	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	524
BsaXI	ACNNNNNCTCC	2 cut(s)	626, 656
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	2 cut(s)	581, 643
Bse8I	GATNNNNATC	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	524
BseGI	GGATG	1 cut(s)	585
BseJI	GATNNNNATC	1 cut(s)	305
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	2 cut(s)	581, 643
BseXI	GCAGC	5 cut(s)	274, 541, 575, 612, 615
BshFI	GGCC	2 cut(s)	293, 523
BsiHKCI	CYCGRG	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	2 cut(s)	293, 523
BsoBI	CYCGRG	1 cut(s)	392
Bsp143I	GATC	3 cut(s)	306, 474, 625
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	2 cut(s)	293, 523
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	476
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	3 cut(s)	301, 469, 482
BsrI	ACTGG	2 cut(s)	581, 643
BssECI	CCNNGG	1 cut(s)	524
BssMI	GATC	3 cut(s)	306, 474, 625
BssT1I	CCWWGG	1 cut(s)	524
Bst4CI	ACNGT	2 cut(s)	255, 587
Bst6I	CTCTTC	1 cut(s)	480
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	3 cut(s)	50, 158, 389
BstDEI	CTNAG	2 cut(s)	147, 481
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	585
BstHHI	GCGC	2 cut(s)	229, 669
BstKTI	GATC	3 cut(s)	309, 477, 628
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	3 cut(s)	306, 474, 625
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 224, 271, 290, 515, 529
BstNSI	RCATGY	2 cut(s)	187, 218
BstPI	GGTNACC	1 cut(s)	55
BstV1I	GCAGC	5 cut(s)	274, 541, 575, 612, 615
BstX2I	RGATCY	2 cut(s)	306, 474
BstYI	RGATCY	2 cut(s)	306, 474
BsuRI	GGCC	2 cut(s)	293, 523
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	585
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	50, 158, 389
CfoI	GCGC	2 cut(s)	229, 669
Cfr13I	GGNCC	1 cut(s)	653
CviAII	CATG	6 cut(s)	184, 215, 275, 289, 341, 439
DdeI	CTNAG	2 cut(s)	147, 481
DpnI	GATC	3 cut(s)	308, 476, 627
DpnII	GATC	3 cut(s)	306, 474, 625
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	524
Eco147I	AGGCCT	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	653
Eco57I	CTGAAG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	392
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	524
ErhI	CCWWGG	1 cut(s)	524
FaeI	CATG	6 cut(s)	187, 218, 278, 292, 344, 442
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	6 cut(s)	183, 214, 274, 288, 340, 438
Fnu4HI	GCNGC	5 cut(s)	263, 530, 564, 601, 604
FokI	GGATG	1 cut(s)	592
Fsp4HI	GCNGC	5 cut(s)	263, 530, 564, 601, 604
FspBI	CTAG	1 cut(s)	311
FspI	TGCGCA	1 cut(s)	228
GlaI	GCGC	2 cut(s)	228, 668
GluI	GCNGC	5 cut(s)	263, 530, 564, 601, 604
HaeIII	GGCC	2 cut(s)	293, 523
HhaI	GCGC	2 cut(s)	229, 669
Hin1II	CATG	6 cut(s)	187, 218, 278, 292, 344, 442
Hin6I	GCGC	2 cut(s)	227, 667
HinP1I	GCGC	2 cut(s)	227, 667
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	3 cut(s)	278, 350, 456
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	5 cut(s)	150, 181, 378, 625, 653
Hpy188III	TCNNGA	3 cut(s)	365, 416, 545
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	3 cut(s)	85, 145, 460
HpyCH4III	ACNGT	2 cut(s)	255, 587
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	4 cut(s)	187, 218, 262, 518
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 224, 271, 290, 515, 529
HpyF3I	CTNAG	2 cut(s)	147, 481
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	6 cut(s)	187, 218, 278, 292, 344, 442
HspAI	GCGC	2 cut(s)	227, 667
Kzo9I	GATC	3 cut(s)	306, 474, 625
LpnPI	CCDG	9 cut(s)	34, 38, 142, 187, 401, 562, 614, 624, 672
Lsp1109I	GCAGC	5 cut(s)	274, 541, 575, 612, 615
LweI	GCATC	2 cut(s)	109, 654
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	3 cut(s)	308, 476, 627
MboI	GATC	3 cut(s)	306, 474, 625
MboII	GAAGA	4 cut(s)	25, 100, 310, 497
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	2 cut(s)	306, 474
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	3 cut(s)	30, 266, 619
MluNI	TGGCCA	1 cut(s)	293
MlyI	GAGTC	1 cut(s)	450
MnlI	CCTC	3 cut(s)	321, 465, 488
Mox20I	TGGCCA	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	293
MslI	CAYNNNNRTG	1 cut(s)	213
Msp20I	TGGCCA	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	284
MunI	CAATTG	1 cut(s)	266
MwoI	GCNNNNNNNGC	6 cut(s)	128, 224, 271, 290, 515, 529
NdeII	GATC	3 cut(s)	306, 474, 625
NlaIII	CATG	6 cut(s)	187, 218, 278, 292, 344, 442
NlaIV	GGNNCC	1 cut(s)	476
NsbI	TGCGCA	1 cut(s)	228
NspI	RCATGY	2 cut(s)	187, 218
PaeR7I	CTCGAG	1 cut(s)	392
PceI	AGGCCT	1 cut(s)	523
PcsI	WCGNNNNNNNCGW	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	278, 350
PkrI	GCNGC	5 cut(s)	264, 531, 565, 602, 605
PleI	GAGTC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	450
PsiI	TTATAA	1 cut(s)	573
PspEI	GGTNACC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	476
PspPI	GGNCC	1 cut(s)	653
PspXI	VCTCGAGB	1 cut(s)	392
PsuI	RGATCY	2 cut(s)	306, 474
PvuII	CAGCTG	1 cut(s)	284
RseI	CAYNNNNRTG	1 cut(s)	213
SatI	GCNGC	5 cut(s)	263, 530, 564, 601, 604
Sau3AI	GATC	3 cut(s)	306, 474, 625
Sau96I	GGNCC	1 cut(s)	653
SchI	GAGTC	1 cut(s)	450
SfaNI	GCATC	2 cut(s)	109, 654
Sfr274I	CTCGAG	1 cut(s)	392
SinI	GGWCC	1 cut(s)	653
SlaI	CTCGAG	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	2 cut(s)	363, 392
SmoI	CTYRAG	2 cut(s)	363, 392
Sse9I	AATT	3 cut(s)	30, 266, 619
SseBI	AGGCCT	1 cut(s)	523
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	311
StuI	AGGCCT	1 cut(s)	523
StyI	CCWWGG	1 cut(s)	524
TaaI	ACNGT	2 cut(s)	255, 587
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	3 cut(s)	73, 393, 415
TasI	AATT	3 cut(s)	30, 266, 619
TfiI	GAWTC	2 cut(s)	278, 350
TseI	GCWGC	5 cut(s)	262, 529, 563, 600, 603
TspDTI	ATGAA	5 cut(s)	38, 291, 427, 596, 637
TspGWI	ACGGA	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	653
XceI	RCATGY	2 cut(s)	187, 218
XhoI	CTCGAG	1 cut(s)	392
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.