Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Reverse (-)

62001394 .. 62008093

Gene Structure 6700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG400200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAAGCTGGTATTGATGAATATGGAAATAAAGGTTTGTGTGGCCTCAGAATAAAGAGGAGGCTTTTGGGACATGACTTAGATTCTTGCTCTGCTCAAGAACTCAATCAGATCAGTAGCCAGCTCGAGCGAAGCTTGTGCATTGTACGAGAGAGAAAGGCTCAGCTATTCATGGAGCAGATAGAACGACTAAAAGAAAAGGGGAGGCTCCTCTTAGAAGAGAATGTAAAACTACACACAGAGTGTGGTGCAAGGCGTTGTCAGAAACCTTTAATTCAAAAAAAAGGAGTTGGGGCGGCAAGTTGTAACTGGATGAATAGTAGTCAAAGTAGCAGCAGTCAAACAATTAGTAATTCAGATCAGAAGACCAGAAGCCTTGGCAGTTGCATGTATCTGATTAATAACTGCAGACTGGAAACTGAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

142

Amino Acids

16.06

Weight (kDa)

8.83

Isoelectric Point (pI)

59.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	19 - 81	1.6e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	296
AdeI	CACNNNGTG	1 cut(s)	243
AfaI	GTAC	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	278
AluBI	AGCT	4 cut(s)	8, 124, 135, 166
AluI	AGCT	4 cut(s)	8, 124, 135, 166
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	333
AseI	ATTAAT	1 cut(s)	399
AvaI	CYCGRG	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	345
BcgI	CGANNNNNNTGC	2 cut(s)	120, 154
BfmI	CTRYAG	1 cut(s)	406
BisI	GCNGC	2 cut(s)	297, 334
BlpI	GCTNAGC	1 cut(s)	162
BlsI	GCNGC	2 cut(s)	298, 335
BmeT110I	CYCGRG	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	371
BplI	GAGNNNNNCTC	2 cut(s)	145, 177
Bpu1102I	GCTNAGC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	376
Bse1I	ACTGG	2 cut(s)	314, 417
BseDI	CCNNGG	1 cut(s)	376
BseGI	GGATG	1 cut(s)	318
BseMII	CTCAG	2 cut(s)	61, 176
BseNI	ACTGG	2 cut(s)	314, 417
BseRI	GAGGAG	2 cut(s)	73, 200
BseXI	GCAGC	1 cut(s)	345
BshFI	GGCC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	45
BsoBI	CYCGRG	1 cut(s)	125
Bsp143I	GATC	2 cut(s)	111, 358
Bsp1720I	GCTNAGC	1 cut(s)	162
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	2 cut(s)	60, 175
BspLI	GGNNCC	1 cut(s)	209
BspMAI	CTGCAG	1 cut(s)	410
BsrI	ACTGG	2 cut(s)	314, 417
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	2 cut(s)	111, 358
BssT1I	CCWWGG	1 cut(s)	376
Bst6I	CTCTTC	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	4 cut(s)	47, 79, 162, 214
BstF5I	GGATG	1 cut(s)	318
BstKTI	GATC	2 cut(s)	114, 361
BstMBI	GATC	2 cut(s)	111, 358
BstNSI	RCATGY	1 cut(s)	391
BstSFI	CTRYAG	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	345
BstV2I	GAAGAC	1 cut(s)	371
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	424
Cac8I	GCNNGC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	3 cut(s)	74, 172, 388
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	4 cut(s)	47, 79, 162, 214
DpnI	GATC	2 cut(s)	113, 360
DpnII	GATC	2 cut(s)	111, 358
DraIII	CACNNNGTG	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	376
Eco88I	CYCGRG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	3 cut(s)	77, 175, 391
FaiI	YATR	4 cut(s)	24, 75, 173, 389
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	3 cut(s)	73, 171, 387
Fnu4HI	GCNGC	2 cut(s)	297, 334
FokI	GGATG	1 cut(s)	325
Fsp4HI	GCNGC	2 cut(s)	297, 334
GluI	GCNGC	2 cut(s)	297, 334
HaeIII	GGCC	1 cut(s)	45
Hin1II	CATG	3 cut(s)	77, 175, 391
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	1 cut(s)	83
Hpy188I	TCNGA	6 cut(s)	50, 111, 264, 358, 363, 396
Hpy188III	TCNNGA	1 cut(s)	98
HpyCH4V	TGCA	4 cut(s)	141, 251, 387, 408
HpyF3I	CTNAG	4 cut(s)	47, 79, 162, 214
Hsp92II	CATG	3 cut(s)	77, 175, 391
Kzo9I	GATC	2 cut(s)	111, 358
LmnI	GCTCC	2 cut(s)	175, 213
LpnPI	CCDG	4 cut(s)	134, 295, 382, 398
Lsp1109I	GCAGC	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	2 cut(s)	113, 360
MboI	GATC	2 cut(s)	111, 358
MboII	GAAGA	2 cut(s)	230, 376
MluCI	AATT	3 cut(s)	273, 345, 352
MnlI	CCTC	5 cut(s)	51, 54, 56, 198, 221
MseI	TTAA	2 cut(s)	272, 399
NdeII	GATC	2 cut(s)	111, 358
NlaIII	CATG	3 cut(s)	77, 175, 391
NlaIV	GGNNCC	1 cut(s)	209
NspI	RCATGY	1 cut(s)	391
PaeR7I	CTCGAG	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	298, 335
PshBI	ATTAAT	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	209
PspXI	VCTCGAGB	1 cut(s)	125
PstI	CTGCAG	1 cut(s)	410
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	272, 399
SatI	GCNGC	2 cut(s)	297, 334
Sau3AI	GATC	2 cut(s)	111, 358
SetI	ASST	6 cut(s)	10, 37, 126, 137, 168, 271
SfcI	CTRYAG	1 cut(s)	406
Sfr274I	CTCGAG	1 cut(s)	125
SlaI	CTCGAG	1 cut(s)	125
SmlI	CTYRAG	2 cut(s)	96, 125
SmoI	CTYRAG	2 cut(s)	96, 125
Sse9I	AATT	3 cut(s)	273, 345, 352
SsiI	CCGC	1 cut(s)	296
StyI	CCWWGG	1 cut(s)	376
TaqI	TCGA	1 cut(s)	126
TasI	AATT	3 cut(s)	273, 345, 352
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	2 cut(s)	272, 399
Tru9I	TTAA	2 cut(s)	272, 399
TseI	GCWGC	1 cut(s)	333
TspDTI	ATGAA	3 cut(s)	33, 160, 329
VspI	ATTAAT	1 cut(s)	399
XceI	RCATGY	1 cut(s)	391
XhoI	CTCGAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.