Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000116.1

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Reverse (-)

306411 .. 316584

Gene Structure 10174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000116.1_g000060.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atggaagctggtattgatgaatatggaaataaaggggttttgcttctgggtttcatctctgagatttgggttttgattacacccaagtttgatactttcttgggggactgggttttgactatccaggagatggtgagagggaagattcagatgaaaaaaatcgaaaatacgacaagcaggcaggtaaccttttcgaaacgtcgaaacgggttgttgaagaaggcttatgagctttcggttctttgcgatgccgaagttgcggtgatcatcttttctcagaatggcaggctctacgagttttccagctctgacatgcaaaagactataaaccaataccataaacatgcaaaaggtgtgcaaaccaacactattgaagtggaacagtgtatgcagcaattgaagcatgaatcagctgacatggccaagaagattgagatcctagaagcttctcaacggaggcttttgggacatgacttagattattgctctgctcaagaactcaatcagatcagtagccagctcgagcgaagcttgtgcattgtacgagagagaaaggctcagctattcatggagcagatagaacgactaaaagcaaaggggaggctcctcttagaagagaatataaaactacacacagagtgtggtgcaaggcgttggactgggctgaaggcaaggaatggccgtggctcaaatctgtcaaatgaaaccaatatgctacagactctcaagaagagctcaaggagcaacctgatgctgaggttgttggcttcagaggaggctgcagatggtgctggttccaaccctaccgggaaggtacttgcgttttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

276

Amino Acids

31.29

Weight (kDa)

9.12

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	172
AccB7I	CCANNNNNTGG	1 cut(s)	130
AciI	CCGC	1 cut(s)	260
AclWI	GGATC	1 cut(s)	430
AcoI	YGGCCR	2 cut(s)	420, 679
AcuI	CTGAAG	2 cut(s)	686, 753
AdeI	CACNNNGTG	1 cut(s)	639
AfaI	GTAC	2 cut(s)	543, 816
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	217, 374, 400
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	9 cut(s)	8, 232, 306, 413, 446, 520, 531, 562, 735
AluI	AGCT	9 cut(s)	8, 232, 306, 413, 446, 520, 531, 562, 735
Alw21I	GWGCWC	1 cut(s)	737
AlwI	GGATC	1 cut(s)	430
Ama87I	CYCGRG	1 cut(s)	521
AoxI	GGCC	2 cut(s)	420, 679
ApeKI	GCWGC	2 cut(s)	391, 779
AsuC2I	CCSGG	1 cut(s)	808
AsuHPI	GGTGA	2 cut(s)	145, 274
AsuII	TTCGAA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	521
BaeI	ACNNNNGTAYC	1 cut(s)	806
BalI	TGGCCA	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	737
Bbv12I	GWGCWC	1 cut(s)	737
BbvCI	CCTCAGC	1 cut(s)	755
BbvI	GCAGC	2 cut(s)	403, 766
BccI	CCATC	2 cut(s)	124, 779
BceAI	ACGGC	1 cut(s)	666
BcgI	CGANNNNNNTGC	2 cut(s)	516, 550
BciT130I	CCWGG	1 cut(s)	125
BclI	TGATCA	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	808
BfaI	CTAG	1 cut(s)	440
BfmI	CTRYAG	2 cut(s)	716, 780
BfuAI	ACCTGC	1 cut(s)	172
BisI	GCNGC	2 cut(s)	392, 780
BlpI	GCTNAGC	1 cut(s)	558
BlsI	GCNGC	2 cut(s)	393, 781
Bme1390I	CCNGG	2 cut(s)	125, 808
BmeT110I	CYCGRG	1 cut(s)	521
BmiI	GGNNCC	2 cut(s)	605, 796
BmrFI	CCNGG	2 cut(s)	125, 808
BmrI	ACTGGG	2 cut(s)	118, 669
BmsI	GCATC	2 cut(s)	238, 741
BmuI	ACTGGG	2 cut(s)	118, 669
BplI	GAGNNNNNCTC	2 cut(s)	541, 573
Bpu10I	CCTNAGC	1 cut(s)	755
Bpu1102I	GCTNAGC	1 cut(s)	558
Bpu14I	TTCGAA	1 cut(s)	194
BpuEI	CTTGAG	3 cut(s)	477, 710, 721
BpuMI	CCSGG	1 cut(s)	808
BsaBI	GATNNNNATC	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	682
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	2 cut(s)	113, 664
Bse8I	GATNNNNATC	1 cut(s)	434
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	682
BseJI	GATNNNNATC	1 cut(s)	434
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	4 cut(s)	51, 290, 572, 746
BseNI	ACTGG	2 cut(s)	113, 664
BseRI	GAGGAG	2 cut(s)	596, 788
BseXI	GCAGC	2 cut(s)	403, 766
BshFI	GGCC	2 cut(s)	422, 681
BsiHKAI	GWGCWC	1 cut(s)	737
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	1 cut(s)	807
BslFI	GGGAC	2 cut(s)	119, 480
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmFI	GGGAC	2 cut(s)	119, 480
BsnI	GGCC	2 cut(s)	422, 681
BsoBI	CYCGRG	1 cut(s)	521
Bsp119I	TTCGAA	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	737
Bsp143I	GATC	3 cut(s)	264, 435, 507
Bsp1720I	GCTNAGC	1 cut(s)	558
BspACI	CCGC	1 cut(s)	260
BspANI	GGCC	2 cut(s)	422, 681
BspCNI	CTCAG	4 cut(s)	52, 289, 571, 747
BspLI	GGNNCC	2 cut(s)	605, 796
BspMAI	CTGCAG	1 cut(s)	784
BspMI	ACCTGC	1 cut(s)	172
BspPI	GGATC	1 cut(s)	430
BspQI	GCTCTTC	1 cut(s)	725
BspT104I	TTCGAA	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	113, 664
BssECI	CCNNGG	1 cut(s)	682
BssMI	GATC	3 cut(s)	264, 435, 507
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	384
Bst6I	CTCTTC	2 cut(s)	609, 725
BstAPI	GCANNNNNTGC	1 cut(s)	788
BstBI	TTCGAA	1 cut(s)	194
BstC8I	GCNNGC	3 cut(s)	179, 287, 518
BstDEI	CTNAG	6 cut(s)	60, 276, 475, 558, 610, 755
BstDSI	CCRYGG	1 cut(s)	682
BstEII	GGTNACC	1 cut(s)	184
BstKTI	GATC	3 cut(s)	267, 438, 510
BstMBI	GATC	3 cut(s)	264, 435, 507
BstMWI	GCNNNNNNNGC	5 cut(s)	257, 400, 419, 741, 788
BstNI	CCWGG	1 cut(s)	125
BstNSI	RCATGY	2 cut(s)	316, 347
BstPI	GGTNACC	1 cut(s)	184
BstSCI	CCNGG	2 cut(s)	123, 806
BstSFI	CTRYAG	2 cut(s)	716, 780
BstV1I	GCAGC	2 cut(s)	403, 766
BstX2I	RGATCY	1 cut(s)	435
BstYI	RGATCY	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	422, 681
BtgI	CCRYGG	1 cut(s)	682
BtgZI	GCGATG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	389
BveI	ACCTGC	1 cut(s)	172
Cac8I	GCNNGC	3 cut(s)	179, 287, 518
Csp6I	GTAC	2 cut(s)	542, 815
CviAII	CATG	6 cut(s)	313, 344, 404, 418, 470, 568
CviQI	GTAC	2 cut(s)	542, 815
DdeI	CTNAG	6 cut(s)	60, 276, 475, 558, 610, 755
DpnI	GATC	3 cut(s)	266, 437, 509
DpnII	GATC	3 cut(s)	264, 435, 507
DraIII	CACNNNGTG	1 cut(s)	639
EaeI	YGGCCR	2 cut(s)	420, 679
Eam1104I	CTCTTC	2 cut(s)	609, 725
EarI	CTCTTC	2 cut(s)	609, 725
Ecl136II	GAGCTC	1 cut(s)	735
Eco24I	GRGCYC	1 cut(s)	737
Eco53kI	GAGCTC	1 cut(s)	735
Eco57I	CTGAAG	2 cut(s)	686, 753
Eco88I	CYCGRG	1 cut(s)	521
Eco91I	GGTNACC	1 cut(s)	184
EcoICRI	GAGCTC	1 cut(s)	735
EcoO65I	GGTNACC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	737
FaeI	CATG	6 cut(s)	316, 347, 407, 421, 473, 571
FaqI	GGGAC	2 cut(s)	119, 480
FatI	CATG	6 cut(s)	312, 343, 403, 417, 469, 567
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	2 cut(s)	392, 780
FriOI	GRGCYC	1 cut(s)	737
Fsp4HI	GCNGC	2 cut(s)	392, 780
FspBI	CTAG	1 cut(s)	440
GluI	GCNGC	2 cut(s)	392, 780
HaeIII	GGCC	2 cut(s)	422, 681
HapII	CCGG	1 cut(s)	807
Hin1II	CATG	6 cut(s)	316, 347, 407, 421, 473, 571
HindIII	AAGCTT	2 cut(s)	444, 529
HinfI	GANTC	3 cut(s)	145, 407, 721
HpaII	CCGG	1 cut(s)	807
HphI	GGTGA	2 cut(s)	145, 274
Hpy188I	TCNGA	6 cut(s)	61, 150, 279, 310, 507, 772
Hpy188III	TCNNGA	2 cut(s)	494, 727
Hpy99I	CGWCG	1 cut(s)	204
HpyAV	CCTTC	3 cut(s)	214, 661, 805
HpyCH4III	ACNGT	1 cut(s)	384
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	7 cut(s)	316, 347, 358, 391, 537, 647, 782
HpyF10VI	GCNNNNNNNGC	5 cut(s)	257, 400, 419, 741, 788
HpyF3I	CTNAG	6 cut(s)	60, 276, 475, 558, 610, 755
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	6 cut(s)	316, 347, 407, 421, 473, 571
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	3 cut(s)	264, 435, 507
LguI	GCTCTTC	1 cut(s)	725
LmnI	GCTCC	3 cut(s)	571, 609, 741
Lsp1109I	GCAGC	2 cut(s)	403, 766
LweI	GCATC	2 cut(s)	238, 741
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	3 cut(s)	266, 437, 509
MboI	GATC	3 cut(s)	264, 435, 507
MboII	GAAGA	5 cut(s)	154, 229, 439, 626, 742
MfeI	CAATTG	1 cut(s)	395
MflI	RGATCY	1 cut(s)	435
MhlI	GDGCHC	1 cut(s)	737
MlsI	TGGCCA	1 cut(s)	422
MluCI	AATT	1 cut(s)	395
MluNI	TGGCCA	1 cut(s)	422
MlyI	GAGTC	1 cut(s)	715
MmeI	TCCRAC	2 cut(s)	635, 822
MnlI	CCTC	7 cut(s)	131, 450, 594, 617, 750, 766, 769
Mox20I	TGGCCA	1 cut(s)	422
MscI	TGGCCA	1 cut(s)	422
MseI	TTAA	1 cut(s)	829
MslI	CAYNNNNRTG	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	1 cut(s)	807
MspR9I	CCNGG	2 cut(s)	125, 808
MunI	CAATTG	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	5 cut(s)	257, 400, 419, 741, 788
NciI	CCSGG	1 cut(s)	808
NdeII	GATC	3 cut(s)	264, 435, 507
NlaIII	CATG	6 cut(s)	316, 347, 407, 421, 473, 571
NlaIV	GGNNCC	2 cut(s)	605, 796
NspI	RCATGY	2 cut(s)	316, 347
NspV	TTCGAA	1 cut(s)	194
PaeR7I	CTCGAG	1 cut(s)	521
PciSI	GCTCTTC	1 cut(s)	725
PfeI	GAWTC	2 cut(s)	145, 407
PflMI	CCANNNNNTGG	1 cut(s)	130
PfoI	TCCNGGA	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	393, 781
PleI	GAGTC	1 cut(s)	715
PpsI	GAGTC	1 cut(s)	715
Psp124BI	GAGCTC	1 cut(s)	737
Psp6I	CCWGG	1 cut(s)	123
PspEI	GGTNACC	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	2 cut(s)	605, 796
PspXI	VCTCGAGB	1 cut(s)	521
PstI	CTGCAG	1 cut(s)	784
PsuI	RGATCY	1 cut(s)	435
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	2 cut(s)	543, 816
RsaNI	GTAC	2 cut(s)	542, 815
RseI	CAYNNNNRTG	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	737
SapI	GCTCTTC	1 cut(s)	725
SaqAI	TTAA	1 cut(s)	829
SatI	GCNGC	2 cut(s)	392, 780
Sau3AI	GATC	3 cut(s)	264, 435, 507
SchI	GAGTC	1 cut(s)	715
ScrFI	CCNGG	2 cut(s)	125, 808
SduI	GDGCHC	1 cut(s)	737
SfaNI	GCATC	2 cut(s)	238, 741
SfcI	CTRYAG	2 cut(s)	716, 780
Sfr274I	CTCGAG	1 cut(s)	521
SfuI	TTCGAA	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	4 cut(s)	492, 521, 725, 736
SmoI	CTYRAG	4 cut(s)	492, 521, 725, 736
Sse9I	AATT	1 cut(s)	395
SsiI	CCGC	1 cut(s)	260
SspMI	CTAG	1 cut(s)	440
SstI	GAGCTC	1 cut(s)	737
StyD4I	CCNGG	2 cut(s)	123, 806
TaaI	ACNGT	1 cut(s)	384
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	4 cut(s)	162, 194, 202, 522
TasI	AATT	1 cut(s)	395
TfiI	GAWTC	2 cut(s)	145, 407
Tru1I	TTAA	1 cut(s)	829
Tru9I	TTAA	1 cut(s)	829
TscAI	CASTG	1 cut(s)	389
TseI	GCWGC	2 cut(s)	391, 779
TspDTI	ATGAA	6 cut(s)	33, 43, 167, 420, 556, 717
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	1 cut(s)	389
Van91I	CCANNNNNTGG	1 cut(s)	130
XceI	RCATGY	2 cut(s)	316, 347
XhoI	CTCGAG	1 cut(s)	521
XspI	CTAG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.